co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G51890

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010055: atrichoblast differentiation	0.00E+00
2	GO:0043201: response to leucine	0.00E+00
3	GO:0043620: regulation of DNA-templated transcription in response to stress	0.00E+00
4	GO:0080052: response to histidine	0.00E+00
5	GO:0080053: response to phenylalanine	0.00E+00
6	GO:0045730: respiratory burst	0.00E+00
7	GO:0009423: chorismate biosynthetic process	1.50E-05
8	GO:0032107: regulation of response to nutrient levels	6.26E-05
9	GO:0043547: positive regulation of GTPase activity	6.26E-05
10	GO:0009968: negative regulation of signal transduction	6.26E-05
11	GO:0009073: aromatic amino acid family biosynthetic process	7.62E-05
12	GO:0009809: lignin biosynthetic process	1.45E-04
13	GO:0009805: coumarin biosynthetic process	1.52E-04
14	GO:1902066: regulation of cell wall pectin metabolic process	1.52E-04
15	GO:0019632: shikimate metabolic process	1.52E-04
16	GO:0052542: defense response by callose deposition	1.52E-04
17	GO:0042939: tripeptide transport	1.52E-04
18	GO:0030187: melatonin biosynthetic process	1.52E-04
19	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	1.52E-04
20	GO:0080147: root hair cell development	1.69E-04
21	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	2.57E-04
22	GO:1901672: positive regulation of systemic acquired resistance	2.57E-04
23	GO:0048586: regulation of long-day photoperiodism, flowering	2.57E-04
24	GO:0032922: circadian regulation of gene expression	2.57E-04
25	GO:0010116: positive regulation of abscisic acid biosynthetic process	3.73E-04
26	GO:0007231: osmosensory signaling pathway	3.73E-04
27	GO:0010104: regulation of ethylene-activated signaling pathway	3.73E-04
28	GO:0002679: respiratory burst involved in defense response	3.73E-04
29	GO:0033356: UDP-L-arabinose metabolic process	4.99E-04
30	GO:0033500: carbohydrate homeostasis	4.99E-04
31	GO:0042938: dipeptide transport	4.99E-04
32	GO:0009164: nucleoside catabolic process	6.32E-04
33	GO:0050665: hydrogen peroxide biosynthetic process	7.73E-04
34	GO:0009832: plant-type cell wall biogenesis	8.28E-04
35	GO:0071470: cellular response to osmotic stress	9.20E-04
36	GO:0098869: cellular oxidant detoxification	1.07E-03
37	GO:0043090: amino acid import	1.07E-03
38	GO:0071669: plant-type cell wall organization or biogenesis	1.07E-03
39	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	1.07E-03
40	GO:1902074: response to salt	1.07E-03
41	GO:0010928: regulation of auxin mediated signaling pathway	1.24E-03
42	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.24E-03
43	GO:0009850: auxin metabolic process	1.24E-03
44	GO:0009808: lignin metabolic process	1.41E-03
45	GO:0009932: cell tip growth	1.41E-03
46	GO:0015780: nucleotide-sugar transport	1.58E-03
47	GO:0007338: single fertilization	1.58E-03
48	GO:0006754: ATP biosynthetic process	1.58E-03
49	GO:0032259: methylation	1.67E-03
50	GO:0008202: steroid metabolic process	1.77E-03
51	GO:0006857: oligopeptide transport	1.79E-03
52	GO:0043069: negative regulation of programmed cell death	1.96E-03
53	GO:0051555: flavonol biosynthetic process	1.96E-03
54	GO:0006032: chitin catabolic process	1.96E-03
55	GO:0072593: reactive oxygen species metabolic process	2.17E-03
56	GO:0000272: polysaccharide catabolic process	2.17E-03
57	GO:0015706: nitrate transport	2.37E-03
58	GO:2000028: regulation of photoperiodism, flowering	2.58E-03
59	GO:0030036: actin cytoskeleton organization	2.58E-03
60	GO:0055046: microgametogenesis	2.58E-03
61	GO:0009887: animal organ morphogenesis	2.80E-03
62	GO:0010053: root epidermal cell differentiation	3.03E-03
63	GO:0010167: response to nitrate	3.03E-03
64	GO:0009611: response to wounding	3.73E-03
65	GO:0006874: cellular calcium ion homeostasis	3.74E-03
66	GO:0048511: rhythmic process	3.98E-03
67	GO:0016998: cell wall macromolecule catabolic process	3.98E-03
68	GO:2000022: regulation of jasmonic acid mediated signaling pathway	4.24E-03
69	GO:0007166: cell surface receptor signaling pathway	4.64E-03
70	GO:0009561: megagametogenesis	4.76E-03
71	GO:0042127: regulation of cell proliferation	4.76E-03
72	GO:0015991: ATP hydrolysis coupled proton transport	5.31E-03
73	GO:0034220: ion transmembrane transport	5.31E-03
74	GO:0010182: sugar mediated signaling pathway	5.59E-03
75	GO:0009737: response to abscisic acid	5.66E-03
76	GO:0009749: response to glucose	6.17E-03
77	GO:0006970: response to osmotic stress	6.75E-03
78	GO:0009567: double fertilization forming a zygote and endosperm	7.38E-03
79	GO:0080167: response to karrikin	7.77E-03
80	GO:0051607: defense response to virus	8.02E-03
81	GO:0009615: response to virus	8.35E-03
82	GO:0042128: nitrate assimilation	9.01E-03
83	GO:0006888: ER to Golgi vesicle-mediated transport	9.36E-03
84	GO:0030244: cellulose biosynthetic process	1.01E-02
85	GO:0009407: toxin catabolic process	1.08E-02
86	GO:0009631: cold acclimation	1.11E-02
87	GO:0048527: lateral root development	1.11E-02
88	GO:0010119: regulation of stomatal movement	1.11E-02
89	GO:0006865: amino acid transport	1.15E-02
90	GO:0006099: tricarboxylic acid cycle	1.23E-02
91	GO:0008152: metabolic process	1.27E-02
92	GO:0042542: response to hydrogen peroxide	1.38E-02
93	GO:0051707: response to other organism	1.42E-02
94	GO:0008283: cell proliferation	1.42E-02
95	GO:0008643: carbohydrate transport	1.50E-02
96	GO:0009636: response to toxic substance	1.54E-02
97	GO:0009664: plant-type cell wall organization	1.67E-02
98	GO:0042538: hyperosmotic salinity response	1.67E-02
99	GO:0006096: glycolytic process	1.98E-02
100	GO:0006396: RNA processing	2.30E-02
101	GO:0006952: defense response	2.39E-02
102	GO:0016310: phosphorylation	2.76E-02
103	GO:0042744: hydrogen peroxide catabolic process	2.90E-02
104	GO:0010150: leaf senescence	3.33E-02
105	GO:0006470: protein dephosphorylation	3.66E-02
106	GO:0009617: response to bacterium	3.77E-02
107	GO:0006468: protein phosphorylation	3.88E-02
108	GO:0071555: cell wall organization	4.13E-02
109	GO:0042742: defense response to bacterium	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0033799: myricetin 3'-O-methyltransferase activity	0.00E+00
2	GO:0004764: shikimate 3-dehydrogenase (NADP+) activity	0.00E+00
3	GO:0047763: caffeate O-methyltransferase activity	0.00E+00
4	GO:0004107: chorismate synthase activity	0.00E+00
5	GO:0030755: quercetin 3-O-methyltransferase activity	0.00E+00
6	GO:0030744: luteolin O-methyltransferase activity	0.00E+00
7	GO:0003855: 3-dehydroquinate dehydratase activity	0.00E+00
8	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	6.26E-05
9	GO:0017096: acetylserotonin O-methyltransferase activity	6.26E-05
10	GO:0008171: O-methyltransferase activity	6.42E-05
11	GO:0032934: sterol binding	1.52E-04
12	GO:0052691: UDP-arabinopyranose mutase activity	1.52E-04
13	GO:0042937: tripeptide transporter activity	1.52E-04
14	GO:0016174: NAD(P)H oxidase activity	2.57E-04
15	GO:0042409: caffeoyl-CoA O-methyltransferase activity	2.57E-04
16	GO:0010178: IAA-amino acid conjugate hydrolase activity	3.73E-04
17	GO:0042936: dipeptide transporter activity	4.99E-04
18	GO:0016866: intramolecular transferase activity	4.99E-04
19	GO:0004930: G-protein coupled receptor activity	4.99E-04
20	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	9.20E-04
21	GO:0004656: procollagen-proline 4-dioxygenase activity	9.20E-04
22	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.07E-03
23	GO:0004564: beta-fructofuranosidase activity	1.24E-03
24	GO:0004525: ribonuclease III activity	1.24E-03
25	GO:0008142: oxysterol binding	1.41E-03
26	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	1.58E-03
27	GO:0030955: potassium ion binding	1.77E-03
28	GO:0015112: nitrate transmembrane transporter activity	1.77E-03
29	GO:0004743: pyruvate kinase activity	1.77E-03
30	GO:0004575: sucrose alpha-glucosidase activity	1.77E-03
31	GO:0004568: chitinase activity	1.96E-03
32	GO:0015198: oligopeptide transporter activity	2.37E-03
33	GO:0004022: alcohol dehydrogenase (NAD) activity	2.58E-03
34	GO:0008083: growth factor activity	2.80E-03
35	GO:0005217: intracellular ligand-gated ion channel activity	3.03E-03
36	GO:0008061: chitin binding	3.03E-03
37	GO:0004970: ionotropic glutamate receptor activity	3.03E-03
38	GO:0001046: core promoter sequence-specific DNA binding	3.49E-03
39	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.79E-03
40	GO:0016760: cellulose synthase (UDP-forming) activity	4.50E-03
41	GO:0008194: UDP-glycosyltransferase activity	4.54E-03
42	GO:0005102: receptor binding	5.03E-03
43	GO:0030276: clathrin binding	5.59E-03
44	GO:0010181: FMN binding	5.88E-03
45	GO:0016301: kinase activity	5.98E-03
46	GO:0000287: magnesium ion binding	6.15E-03
47	GO:0004601: peroxidase activity	6.27E-03
48	GO:0008237: metallopeptidase activity	7.70E-03
49	GO:0015250: water channel activity	8.35E-03
50	GO:0004683: calmodulin-dependent protein kinase activity	9.36E-03
51	GO:0004871: signal transducer activity	9.75E-03
52	GO:0005096: GTPase activator activity	1.04E-02
53	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.19E-02
54	GO:0050661: NADP binding	1.30E-02
55	GO:0004364: glutathione transferase activity	1.38E-02
56	GO:0015293: symporter activity	1.54E-02
57	GO:0016887: ATPase activity	1.79E-02
58	GO:0015171: amino acid transmembrane transporter activity	1.89E-02
59	GO:0022857: transmembrane transporter activity	2.16E-02
60	GO:0016746: transferase activity, transferring acyl groups	2.30E-02
61	GO:0016787: hydrolase activity	2.33E-02
62	GO:0016758: transferase activity, transferring hexosyl groups	2.60E-02
63	GO:0008565: protein transporter activity	3.01E-02
64	GO:0005351: sugar:proton symporter activity	3.27E-02
65	GO:0016757: transferase activity, transferring glycosyl groups	4.13E-02
66	GO:0005215: transporter activity	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	4.59E-05
2	GO:0005794: Golgi apparatus	5.83E-05
3	GO:0045252: oxoglutarate dehydrogenase complex	6.26E-05
4	GO:0000138: Golgi trans cisterna	6.26E-05
5	GO:0030131: clathrin adaptor complex	1.24E-03
6	GO:0030665: clathrin-coated vesicle membrane	1.77E-03
7	GO:0031012: extracellular matrix	2.58E-03
8	GO:0005795: Golgi stack	3.03E-03
9	GO:0005770: late endosome	5.59E-03
10	GO:0005802: trans-Golgi network	6.60E-03
11	GO:0016021: integral component of membrane	7.66E-03
12	GO:0005768: endosome	7.77E-03
13	GO:0016020: membrane	1.24E-02
14	GO:0048046: apoplast	1.27E-02
15	GO:0000139: Golgi membrane	1.31E-02
16	GO:0005618: cell wall	1.45E-02
17	GO:0005887: integral component of plasma membrane	1.56E-02
18	GO:0005829: cytosol	1.58E-02
19	GO:0010008: endosome membrane	2.02E-02
20	GO:0005834: heterotrimeric G-protein complex	2.07E-02
21	GO:0005615: extracellular space	3.60E-02
22	GO:0046658: anchored component of plasma membrane	4.06E-02
23	GO:0005774: vacuolar membrane	4.23E-02