Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G50900

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1901918: negative regulation of exoribonuclease activity0.00E+00
2GO:0098586: cellular response to virus0.00E+00
3GO:0009715: chalcone biosynthetic process0.00E+00
4GO:0017009: protein-phycocyanobilin linkage0.00E+00
5GO:0042821: pyridoxal biosynthetic process0.00E+00
6GO:0015882: L-ascorbic acid transport0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
9GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
10GO:0006114: glycerol biosynthetic process0.00E+00
11GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
12GO:0070125: mitochondrial translational elongation0.00E+00
13GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
14GO:0015979: photosynthesis1.44E-19
15GO:0018298: protein-chromophore linkage1.27E-07
16GO:0015995: chlorophyll biosynthetic process2.78E-06
17GO:1902326: positive regulation of chlorophyll biosynthetic process3.24E-06
18GO:0048564: photosystem I assembly5.79E-06
19GO:0090391: granum assembly1.17E-05
20GO:0009735: response to cytokinin2.86E-05
21GO:0009768: photosynthesis, light harvesting in photosystem I9.78E-05
22GO:0010196: nonphotochemical quenching1.99E-04
23GO:0009642: response to light intensity2.52E-04
24GO:0009443: pyridoxal 5'-phosphate salvage2.65E-04
25GO:0071277: cellular response to calcium ion2.65E-04
26GO:0000481: maturation of 5S rRNA2.65E-04
27GO:0042371: vitamin K biosynthetic process2.65E-04
28GO:0043686: co-translational protein modification2.65E-04
29GO:0010028: xanthophyll cycle2.65E-04
30GO:0034337: RNA folding2.65E-04
31GO:0006419: alanyl-tRNA aminoacylation2.65E-04
32GO:0009657: plastid organization3.10E-04
33GO:0010206: photosystem II repair3.74E-04
34GO:0009658: chloroplast organization4.34E-04
35GO:0042853: L-alanine catabolic process5.83E-04
36GO:0046741: transport of virus in host, tissue to tissue5.83E-04
37GO:0009629: response to gravity5.83E-04
38GO:2000030: regulation of response to red or far red light5.83E-04
39GO:0019752: carboxylic acid metabolic process5.83E-04
40GO:0006435: threonyl-tRNA aminoacylation5.83E-04
41GO:0030187: melatonin biosynthetic process5.83E-04
42GO:0000256: allantoin catabolic process5.83E-04
43GO:0080183: response to photooxidative stress5.83E-04
44GO:0006729: tetrahydrobiopterin biosynthetic process5.83E-04
45GO:0006568: tryptophan metabolic process5.83E-04
46GO:0010275: NAD(P)H dehydrogenase complex assembly5.83E-04
47GO:0009773: photosynthetic electron transport in photosystem I5.99E-04
48GO:0018119: peptidyl-cysteine S-nitrosylation5.99E-04
49GO:0010207: photosystem II assembly8.73E-04
50GO:0010020: chloroplast fission8.73E-04
51GO:0019253: reductive pentose-phosphate cycle8.73E-04
52GO:0009405: pathogenesis9.47E-04
53GO:0010136: ureide catabolic process9.47E-04
54GO:0071492: cellular response to UV-A9.47E-04
55GO:0010114: response to red light1.28E-03
56GO:0009052: pentose-phosphate shunt, non-oxidative branch1.35E-03
57GO:0006145: purine nucleobase catabolic process1.35E-03
58GO:0042989: sequestering of actin monomers1.35E-03
59GO:0046739: transport of virus in multicellular host1.35E-03
60GO:0042823: pyridoxal phosphate biosynthetic process1.35E-03
61GO:0043572: plastid fission1.35E-03
62GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.35E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.35E-03
64GO:0006020: inositol metabolic process1.35E-03
65GO:0071484: cellular response to light intensity1.35E-03
66GO:0009644: response to high light intensity1.42E-03
67GO:0015994: chlorophyll metabolic process1.81E-03
68GO:0006546: glycine catabolic process1.81E-03
69GO:0006021: inositol biosynthetic process1.81E-03
70GO:0071486: cellular response to high light intensity1.81E-03
71GO:0009765: photosynthesis, light harvesting1.81E-03
72GO:0006109: regulation of carbohydrate metabolic process1.81E-03
73GO:0016558: protein import into peroxisome matrix2.31E-03
74GO:0030041: actin filament polymerization2.31E-03
75GO:0006656: phosphatidylcholine biosynthetic process2.31E-03
76GO:0043097: pyrimidine nucleoside salvage2.31E-03
77GO:0006564: L-serine biosynthetic process2.31E-03
78GO:0010236: plastoquinone biosynthetic process2.31E-03
79GO:0031365: N-terminal protein amino acid modification2.31E-03
80GO:0055114: oxidation-reduction process2.58E-03
81GO:0010190: cytochrome b6f complex assembly2.85E-03
82GO:0006206: pyrimidine nucleobase metabolic process2.85E-03
83GO:0046855: inositol phosphate dephosphorylation2.85E-03
84GO:0009643: photosynthetic acclimation2.85E-03
85GO:0042549: photosystem II stabilization2.85E-03
86GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.85E-03
87GO:0019761: glucosinolate biosynthetic process3.10E-03
88GO:0010189: vitamin E biosynthetic process3.43E-03
89GO:0071470: cellular response to osmotic stress3.43E-03
90GO:0009645: response to low light intensity stimulus4.04E-03
91GO:0006400: tRNA modification4.04E-03
92GO:0051510: regulation of unidimensional cell growth4.04E-03
93GO:0009772: photosynthetic electron transport in photosystem II4.04E-03
94GO:0009058: biosynthetic process4.18E-03
95GO:0010027: thylakoid membrane organization4.19E-03
96GO:0009704: de-etiolation4.69E-03
97GO:0032508: DNA duplex unwinding4.69E-03
98GO:0031540: regulation of anthocyanin biosynthetic process4.69E-03
99GO:0009231: riboflavin biosynthetic process4.69E-03
100GO:0016559: peroxisome fission4.69E-03
101GO:0032259: methylation5.05E-03
102GO:0016311: dephosphorylation5.20E-03
103GO:0032544: plastid translation5.37E-03
104GO:0017004: cytochrome complex assembly5.37E-03
105GO:0009407: toxin catabolic process6.03E-03
106GO:0010218: response to far red light6.03E-03
107GO:0009245: lipid A biosynthetic process6.09E-03
108GO:0009821: alkaloid biosynthetic process6.09E-03
109GO:0090333: regulation of stomatal closure6.09E-03
110GO:0000373: Group II intron splicing6.09E-03
111GO:0098656: anion transmembrane transport6.09E-03
112GO:0009793: embryo development ending in seed dormancy6.65E-03
113GO:0009098: leucine biosynthetic process6.83E-03
114GO:0009637: response to blue light6.93E-03
115GO:0009853: photorespiration6.93E-03
116GO:0034599: cellular response to oxidative stress7.24E-03
117GO:0006949: syncytium formation7.61E-03
118GO:0006259: DNA metabolic process7.61E-03
119GO:0006265: DNA topological change8.42E-03
120GO:0043085: positive regulation of catalytic activity8.42E-03
121GO:0006415: translational termination8.42E-03
122GO:0046686: response to cadmium ion8.62E-03
123GO:0006790: sulfur compound metabolic process9.26E-03
124GO:0009636: response to toxic substance1.01E-02
125GO:0006006: glucose metabolic process1.01E-02
126GO:0009767: photosynthetic electron transport chain1.01E-02
127GO:0090351: seedling development1.20E-02
128GO:0046854: phosphatidylinositol phosphorylation1.20E-02
129GO:0010224: response to UV-B1.25E-02
130GO:0006863: purine nucleobase transport1.29E-02
131GO:0009416: response to light stimulus1.29E-02
132GO:0080147: root hair cell development1.39E-02
133GO:0007010: cytoskeleton organization1.39E-02
134GO:0007017: microtubule-based process1.49E-02
135GO:0051302: regulation of cell division1.49E-02
136GO:0019953: sexual reproduction1.49E-02
137GO:0019915: lipid storage1.59E-02
138GO:0080092: regulation of pollen tube growth1.70E-02
139GO:0006396: RNA processing1.78E-02
140GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.81E-02
141GO:0009625: response to insect1.81E-02
142GO:0055085: transmembrane transport1.84E-02
143GO:0009306: protein secretion1.92E-02
144GO:0016117: carotenoid biosynthetic process2.03E-02
145GO:0042335: cuticle development2.15E-02
146GO:0000413: protein peptidyl-prolyl isomerization2.15E-02
147GO:0006606: protein import into nucleus2.15E-02
148GO:0006662: glycerol ether metabolic process2.26E-02
149GO:0048868: pollen tube development2.26E-02
150GO:0006810: transport2.28E-02
151GO:0009845: seed germination2.34E-02
152GO:0015986: ATP synthesis coupled proton transport2.38E-02
153GO:0007059: chromosome segregation2.38E-02
154GO:0009791: post-embryonic development2.51E-02
155GO:0000302: response to reactive oxygen species2.63E-02
156GO:0010193: response to ozone2.63E-02
157GO:0006635: fatty acid beta-oxidation2.63E-02
158GO:0016032: viral process2.76E-02
159GO:0006413: translational initiation2.78E-02
160GO:0007623: circadian rhythm2.98E-02
161GO:0009828: plant-type cell wall loosening3.02E-02
162GO:0009451: RNA modification3.05E-02
163GO:0010286: heat acclimation3.15E-02
164GO:0006979: response to oxidative stress3.70E-02
165GO:0009627: systemic acquired resistance3.70E-02
166GO:0042128: nitrate assimilation3.70E-02
167GO:0009817: defense response to fungus, incompatible interaction4.13E-02
168GO:0009813: flavonoid biosynthetic process4.28E-02
169GO:0006811: ion transport4.43E-02
170GO:0048527: lateral root development4.58E-02
171GO:0007568: aging4.58E-02
172GO:0009611: response to wounding4.62E-02
173GO:0042254: ribosome biogenesis4.68E-02
174GO:0009867: jasmonic acid mediated signaling pathway4.88E-02
RankGO TermAdjusted P value
1GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
2GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
3GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity0.00E+00
4GO:0016210: naringenin-chalcone synthase activity0.00E+00
5GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0004760: serine-pyruvate transaminase activity0.00E+00
8GO:0042623: ATPase activity, coupled0.00E+00
9GO:0008974: phosphoribulokinase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
12GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
13GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
14GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
15GO:0050281: serine-glyoxylate transaminase activity0.00E+00
16GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
17GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
18GO:0043136: glycerol-3-phosphatase activity0.00E+00
19GO:0000121: glycerol-1-phosphatase activity0.00E+00
20GO:0016168: chlorophyll binding1.58E-09
21GO:0019899: enzyme binding3.81E-06
22GO:0022891: substrate-specific transmembrane transporter activity6.20E-06
23GO:0008453: alanine-glyoxylate transaminase activity4.76E-05
24GO:0043495: protein anchor4.76E-05
25GO:0031409: pigment binding7.16E-05
26GO:0051287: NAD binding2.30E-04
27GO:0047958: glycine:2-oxoglutarate aminotransferase activity2.65E-04
28GO:0004813: alanine-tRNA ligase activity2.65E-04
29GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity2.65E-04
30GO:0042586: peptide deformylase activity2.65E-04
31GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.65E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity2.65E-04
33GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.65E-04
34GO:0004425: indole-3-glycerol-phosphate synthase activity2.65E-04
35GO:0004451: isocitrate lyase activity2.65E-04
36GO:0016630: protochlorophyllide reductase activity5.83E-04
37GO:0008934: inositol monophosphate 1-phosphatase activity5.83E-04
38GO:0052833: inositol monophosphate 4-phosphatase activity5.83E-04
39GO:0004829: threonine-tRNA ligase activity5.83E-04
40GO:0019172: glyoxalase III activity5.83E-04
41GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.83E-04
42GO:0000234: phosphoethanolamine N-methyltransferase activity5.83E-04
43GO:0003862: 3-isopropylmalate dehydrogenase activity5.83E-04
44GO:0047746: chlorophyllase activity5.83E-04
45GO:0004617: phosphoglycerate dehydrogenase activity5.83E-04
46GO:0004047: aminomethyltransferase activity5.83E-04
47GO:0052832: inositol monophosphate 3-phosphatase activity5.83E-04
48GO:0005089: Rho guanyl-nucleotide exchange factor activity5.99E-04
49GO:0003746: translation elongation factor activity9.38E-04
50GO:0004148: dihydrolipoyl dehydrogenase activity9.47E-04
51GO:0004751: ribose-5-phosphate isomerase activity9.47E-04
52GO:0030267: glyoxylate reductase (NADP) activity9.47E-04
53GO:0070402: NADPH binding9.47E-04
54GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor9.47E-04
55GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.35E-03
56GO:0016149: translation release factor activity, codon specific1.35E-03
57GO:0016851: magnesium chelatase activity1.35E-03
58GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor1.81E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.81E-03
60GO:0016491: oxidoreductase activity1.95E-03
61GO:0003959: NADPH dehydrogenase activity2.31E-03
62GO:0003785: actin monomer binding2.31E-03
63GO:0031177: phosphopantetheine binding2.85E-03
64GO:0000293: ferric-chelate reductase activity2.85E-03
65GO:0004462: lactoylglutathione lyase activity2.85E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.43E-03
67GO:0004849: uridine kinase activity3.43E-03
68GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.43E-03
69GO:0000035: acyl binding3.43E-03
70GO:0008195: phosphatidate phosphatase activity3.43E-03
71GO:0019843: rRNA binding3.90E-03
72GO:0016597: amino acid binding3.96E-03
73GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.69E-03
74GO:0004033: aldo-keto reductase (NADP) activity4.69E-03
75GO:0008757: S-adenosylmethionine-dependent methyltransferase activity5.20E-03
76GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity5.37E-03
77GO:0008135: translation factor activity, RNA binding5.37E-03
78GO:0003747: translation release factor activity6.09E-03
79GO:0016844: strictosidine synthase activity6.83E-03
80GO:0003993: acid phosphatase activity7.24E-03
81GO:0008047: enzyme activator activity7.61E-03
82GO:0042802: identical protein binding7.98E-03
83GO:0004364: glutathione transferase activity8.58E-03
84GO:0000049: tRNA binding9.26E-03
85GO:0051537: 2 iron, 2 sulfur cluster binding9.68E-03
86GO:0005315: inorganic phosphate transmembrane transporter activity1.01E-02
87GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.04E-02
88GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.10E-02
89GO:0005528: FK506 binding1.39E-02
90GO:0004857: enzyme inhibitor activity1.39E-02
91GO:0043424: protein histidine kinase binding1.49E-02
92GO:0005345: purine nucleobase transmembrane transporter activity1.49E-02
93GO:0003727: single-stranded RNA binding1.92E-02
94GO:0008514: organic anion transmembrane transporter activity1.92E-02
95GO:0047134: protein-disulfide reductase activity2.03E-02
96GO:0003924: GTPase activity2.21E-02
97GO:0008080: N-acetyltransferase activity2.26E-02
98GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.26E-02
99GO:0004791: thioredoxin-disulfide reductase activity2.38E-02
100GO:0016853: isomerase activity2.38E-02
101GO:0008565: protein transporter activity2.59E-02
102GO:0048038: quinone binding2.63E-02
103GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.88E-02
104GO:0008483: transaminase activity3.15E-02
105GO:0003743: translation initiation factor activity3.48E-02
106GO:0008168: methyltransferase activity4.43E-02
107GO:0050897: cobalt ion binding4.58E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0009349: riboflavin synthase complex0.00E+00
3GO:0009507: chloroplast5.88E-74
4GO:0009535: chloroplast thylakoid membrane5.93E-54
5GO:0009534: chloroplast thylakoid1.38E-32
6GO:0009941: chloroplast envelope9.65E-27
7GO:0009570: chloroplast stroma1.19E-26
8GO:0009579: thylakoid8.97E-24
9GO:0009543: chloroplast thylakoid lumen4.33E-14
10GO:0009523: photosystem II3.55E-12
11GO:0031977: thylakoid lumen1.66E-08
12GO:0030095: chloroplast photosystem II1.84E-08
13GO:0010287: plastoglobule4.46E-07
14GO:0009654: photosystem II oxygen evolving complex3.36E-06
15GO:0009538: photosystem I reaction center5.79E-06
16GO:0009782: photosystem I antenna complex2.65E-04
17GO:0019898: extrinsic component of membrane2.80E-04
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.74E-04
19GO:0009706: chloroplast inner membrane4.83E-04
20GO:0010007: magnesium chelatase complex9.47E-04
21GO:0033281: TAT protein transport complex9.47E-04
22GO:0030076: light-harvesting complex9.75E-04
23GO:0042651: thylakoid membrane1.32E-03
24GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.81E-03
25GO:0030286: dynein complex1.81E-03
26GO:0009522: photosystem I2.53E-03
27GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.85E-03
28GO:0009295: nucleoid3.73E-03
29GO:0005778: peroxisomal membrane3.73E-03
30GO:0010319: stromule3.73E-03
31GO:0009533: chloroplast stromal thylakoid4.04E-03
32GO:0009539: photosystem II reaction center5.37E-03
33GO:0009707: chloroplast outer membrane5.46E-03
34GO:0016020: membrane5.84E-03
35GO:0016324: apical plasma membrane7.61E-03
36GO:0012511: monolayer-surrounded lipid storage body8.42E-03
37GO:0032040: small-subunit processome9.26E-03
38GO:0009508: plastid chromosome1.01E-02
39GO:0005938: cell cortex1.01E-02
40GO:0031969: chloroplast membrane1.35E-02
41GO:0005777: peroxisome1.58E-02
42GO:0009536: plastid1.68E-02
43GO:0048046: apoplast1.74E-02
44GO:0015629: actin cytoskeleton1.81E-02
45GO:0005759: mitochondrial matrix2.72E-02
46GO:0016021: integral component of membrane3.61E-02
47GO:0005840: ribosome3.92E-02
48GO:0015934: large ribosomal subunit4.58E-02
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Gene type



Gene DE type