co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G50480

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010202: response to low fluence red light stimulus	0.00E+00
2	GO:0017012: protein-phytochromobilin linkage	0.00E+00
3	GO:0010336: gibberellic acid homeostasis	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0010148: transpiration	2.38E-06
6	GO:0010036: response to boron-containing substance	6.74E-05
7	GO:1902265: abscisic acid homeostasis	6.74E-05
8	GO:1902000: homogentisate catabolic process	1.62E-04
9	GO:0007154: cell communication	1.62E-04
10	GO:0019441: tryptophan catabolic process to kynurenine	1.62E-04
11	GO:0043100: pyrimidine nucleobase salvage	1.62E-04
12	GO:0010343: singlet oxygen-mediated programmed cell death	1.62E-04
13	GO:0010617: circadian regulation of calcium ion oscillation	1.62E-04
14	GO:0071836: nectar secretion	2.75E-04
15	GO:0044375: regulation of peroxisome size	2.75E-04
16	GO:0009072: aromatic amino acid family metabolic process	2.75E-04
17	GO:0031022: nuclear migration along microfilament	2.75E-04
18	GO:0006572: tyrosine catabolic process	3.98E-04
19	GO:0046713: borate transport	3.98E-04
20	GO:1902476: chloride transmembrane transport	3.98E-04
21	GO:0009584: detection of visible light	3.98E-04
22	GO:0009902: chloroplast relocation	5.32E-04
23	GO:0009687: abscisic acid metabolic process	5.32E-04
24	GO:0009649: entrainment of circadian clock	5.32E-04
25	GO:0016120: carotene biosynthetic process	6.73E-04
26	GO:0000304: response to singlet oxygen	6.73E-04
27	GO:0010029: regulation of seed germination	7.08E-04
28	GO:0006508: proteolysis	7.51E-04
29	GO:0009117: nucleotide metabolic process	8.23E-04
30	GO:0010304: PSII associated light-harvesting complex II catabolic process	8.23E-04
31	GO:0009903: chloroplast avoidance movement	9.79E-04
32	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	9.79E-04
33	GO:0034389: lipid particle organization	9.79E-04
34	GO:0017148: negative regulation of translation	9.79E-04
35	GO:0050790: regulation of catalytic activity	1.14E-03
36	GO:0010374: stomatal complex development	1.14E-03
37	GO:0010161: red light signaling pathway	1.14E-03
38	GO:0006821: chloride transport	1.14E-03
39	GO:0009231: riboflavin biosynthetic process	1.32E-03
40	GO:0006102: isocitrate metabolic process	1.32E-03
41	GO:0016559: peroxisome fission	1.32E-03
42	GO:0009787: regulation of abscisic acid-activated signaling pathway	1.32E-03
43	GO:0030091: protein repair	1.32E-03
44	GO:0015780: nucleotide-sugar transport	1.69E-03
45	GO:0019432: triglyceride biosynthetic process	1.69E-03
46	GO:0051453: regulation of intracellular pH	1.89E-03
47	GO:0009638: phototropism	1.89E-03
48	GO:0051603: proteolysis involved in cellular protein catabolic process	1.91E-03
49	GO:0045036: protein targeting to chloroplast	2.10E-03
50	GO:0006325: chromatin organization	2.10E-03
51	GO:2000028: regulation of photoperiodism, flowering	2.76E-03
52	GO:0050826: response to freezing	2.76E-03
53	GO:0005986: sucrose biosynthetic process	2.76E-03
54	GO:0030048: actin filament-based movement	2.76E-03
55	GO:0009266: response to temperature stimulus	2.99E-03
56	GO:0007031: peroxisome organization	3.23E-03
57	GO:0006071: glycerol metabolic process	3.48E-03
58	GO:0019748: secondary metabolic process	4.53E-03
59	GO:0006012: galactose metabolic process	4.81E-03
60	GO:0009693: ethylene biosynthetic process	4.81E-03
61	GO:0016117: carotenoid biosynthetic process	5.38E-03
62	GO:0042391: regulation of membrane potential	5.68E-03
63	GO:0010268: brassinosteroid homeostasis	5.98E-03
64	GO:0006520: cellular amino acid metabolic process	5.98E-03
65	GO:0048544: recognition of pollen	6.28E-03
66	GO:0016132: brassinosteroid biosynthetic process	6.91E-03
67	GO:0009630: gravitropism	7.24E-03
68	GO:1901657: glycosyl compound metabolic process	7.57E-03
69	GO:0016125: sterol metabolic process	7.90E-03
70	GO:0006464: cellular protein modification process	7.90E-03
71	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.87E-03
72	GO:0046777: protein autophosphorylation	9.17E-03
73	GO:0042128: nitrate assimilation	9.65E-03
74	GO:0010411: xyloglucan metabolic process	1.00E-02
75	GO:0018298: protein-chromophore linkage	1.08E-02
76	GO:0008219: cell death	1.08E-02
77	GO:0010218: response to far red light	1.15E-02
78	GO:0010043: response to zinc ion	1.19E-02
79	GO:0007568: aging	1.19E-02
80	GO:0009637: response to blue light	1.27E-02
81	GO:0009867: jasmonic acid mediated signaling pathway	1.27E-02
82	GO:0006099: tricarboxylic acid cycle	1.31E-02
83	GO:0009640: photomorphogenesis	1.52E-02
84	GO:0008643: carbohydrate transport	1.61E-02
85	GO:0005975: carbohydrate metabolic process	1.71E-02
86	GO:0031347: regulation of defense response	1.74E-02
87	GO:0009809: lignin biosynthetic process	1.88E-02
88	GO:0009585: red, far-red light phototransduction	1.88E-02
89	GO:0006857: oligopeptide transport	1.97E-02
90	GO:0009626: plant-type hypersensitive response	2.22E-02
91	GO:0009058: biosynthetic process	2.94E-02
92	GO:0007623: circadian rhythm	3.57E-02
93	GO:0006468: protein phosphorylation	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0045436: lycopene beta cyclase activity	0.00E+00
2	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
3	GO:0004334: fumarylacetoacetase activity	0.00E+00
4	GO:0031517: red light photoreceptor activity	0.00E+00
5	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
6	GO:0004328: formamidase activity	6.74E-05
7	GO:0031516: far-red light photoreceptor activity	6.74E-05
8	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	6.74E-05
9	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	6.74E-05
10	GO:0046480: galactolipid galactosyltransferase activity	6.74E-05
11	GO:0080079: cellobiose glucosidase activity	6.74E-05
12	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	6.74E-05
13	GO:0009671: nitrate:proton symporter activity	6.74E-05
14	GO:0010313: phytochrome binding	6.74E-05
15	GO:1990841: promoter-specific chromatin binding	6.74E-05
16	GO:0080139: borate efflux transmembrane transporter activity	6.74E-05
17	GO:0016783: sulfurtransferase activity	6.74E-05
18	GO:0004185: serine-type carboxypeptidase activity	1.09E-04
19	GO:0004450: isocitrate dehydrogenase (NADP+) activity	1.62E-04
20	GO:0009883: red or far-red light photoreceptor activity	1.62E-04
21	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	1.62E-04
22	GO:0004046: aminoacylase activity	1.62E-04
23	GO:0004061: arylformamidase activity	1.62E-04
24	GO:0008020: G-protein coupled photoreceptor activity	2.75E-04
25	GO:0010277: chlorophyllide a oxygenase [overall] activity	2.75E-04
26	GO:0046524: sucrose-phosphate synthase activity	2.75E-04
27	GO:0004557: alpha-galactosidase activity	2.75E-04
28	GO:0003935: GTP cyclohydrolase II activity	2.75E-04
29	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.98E-04
30	GO:0046715: borate transmembrane transporter activity	3.98E-04
31	GO:0048027: mRNA 5'-UTR binding	3.98E-04
32	GO:0035529: NADH pyrophosphatase activity	3.98E-04
33	GO:0004792: thiosulfate sulfurtransferase activity	3.98E-04
34	GO:0004518: nuclease activity	5.01E-04
35	GO:0005253: anion channel activity	5.32E-04
36	GO:0015301: anion:anion antiporter activity	6.73E-04
37	GO:0005452: inorganic anion exchanger activity	6.73E-04
38	GO:0005247: voltage-gated chloride channel activity	8.23E-04
39	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	8.23E-04
40	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	8.23E-04
41	GO:0008236: serine-type peptidase activity	8.26E-04
42	GO:0004144: diacylglycerol O-acyltransferase activity	9.79E-04
43	GO:0016157: sucrose synthase activity	9.79E-04
44	GO:0005261: cation channel activity	9.79E-04
45	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.14E-03
46	GO:0016621: cinnamoyl-CoA reductase activity	1.14E-03
47	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	1.32E-03
48	GO:0004034: aldose 1-epimerase activity	1.32E-03
49	GO:0004673: protein histidine kinase activity	2.10E-03
50	GO:0022857: transmembrane transporter activity	2.46E-03
51	GO:0008378: galactosyltransferase activity	2.53E-03
52	GO:0000155: phosphorelay sensor kinase activity	2.76E-03
53	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.99E-03
54	GO:0030552: cAMP binding	3.23E-03
55	GO:0030553: cGMP binding	3.23E-03
56	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.34E-03
57	GO:0004672: protein kinase activity	3.74E-03
58	GO:0005216: ion channel activity	3.99E-03
59	GO:0008324: cation transmembrane transporter activity	3.99E-03
60	GO:0004176: ATP-dependent peptidase activity	4.26E-03
61	GO:0005249: voltage-gated potassium channel activity	5.68E-03
62	GO:0042802: identical protein binding	5.68E-03
63	GO:0030551: cyclic nucleotide binding	5.68E-03
64	GO:0016853: isomerase activity	6.28E-03
65	GO:0050662: coenzyme binding	6.28E-03
66	GO:0004674: protein serine/threonine kinase activity	6.79E-03
67	GO:0004197: cysteine-type endopeptidase activity	7.24E-03
68	GO:0008483: transaminase activity	8.24E-03
69	GO:0008237: metallopeptidase activity	8.24E-03
70	GO:0016413: O-acetyltransferase activity	8.59E-03
71	GO:0030247: polysaccharide binding	1.00E-02
72	GO:0004871: signal transducer activity	1.08E-02
73	GO:0004222: metalloendopeptidase activity	1.15E-02
74	GO:0008422: beta-glucosidase activity	1.35E-02
75	GO:0051537: 2 iron, 2 sulfur cluster binding	1.61E-02
76	GO:0003729: mRNA binding	1.67E-02
77	GO:0051287: NAD binding	1.74E-02
78	GO:0016298: lipase activity	1.93E-02
79	GO:0008234: cysteine-type peptidase activity	2.02E-02
80	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.17E-02
81	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.98E-02
82	GO:0030246: carbohydrate binding	3.04E-02
83	GO:0030170: pyridoxal phosphate binding	3.05E-02
84	GO:0019825: oxygen binding	3.21E-02
85	GO:0015297: antiporter activity	3.45E-02
86	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.23E-02
87	GO:0005506: iron ion binding	4.48E-02
88	GO:0000287: magnesium ion binding	4.80E-02
89	GO:0016788: hydrolase activity, acting on ester bonds	4.93E-02
90	GO:0003824: catalytic activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0097708: intracellular vesicle	0.00E+00
2	GO:0043674: columella	6.74E-05
3	GO:0005764: lysosome	1.31E-04
4	GO:0016328: lateral plasma membrane	2.75E-04
5	GO:0009526: plastid envelope	5.32E-04
6	GO:0005773: vacuole	6.07E-04
7	GO:0009507: chloroplast	6.42E-04
8	GO:0034707: chloride channel complex	8.23E-04
9	GO:0031359: integral component of chloroplast outer membrane	1.14E-03
10	GO:0005886: plasma membrane	1.22E-03
11	GO:0005811: lipid particle	1.50E-03
12	GO:0005779: integral component of peroxisomal membrane	1.50E-03
13	GO:0016604: nuclear body	1.89E-03
14	GO:0016021: integral component of membrane	3.15E-03
15	GO:0042651: thylakoid membrane	3.99E-03
16	GO:0005778: peroxisomal membrane	8.24E-03
17	GO:0031969: chloroplast membrane	8.57E-03
18	GO:0009707: chloroplast outer membrane	1.08E-02
19	GO:0009536: plastid	1.31E-02
20	GO:0009505: plant-type cell wall	1.34E-02
21	GO:0005887: integral component of plasma membrane	1.72E-02
22	GO:0005829: cytosol	2.02E-02
23	GO:0009941: chloroplast envelope	2.16E-02
24	GO:0016607: nuclear speck	2.17E-02
25	GO:0005747: mitochondrial respiratory chain complex I	2.17E-02
26	GO:0009706: chloroplast inner membrane	2.42E-02
27	GO:0005777: peroxisome	2.59E-02
28	GO:0005623: cell	2.89E-02
29	GO:0005759: mitochondrial matrix	3.33E-02
30	GO:0009705: plant-type vacuole membrane	3.57E-02
31	GO:0016020: membrane	3.63E-02
32	GO:0005615: extracellular space	3.86E-02
33	GO:0005783: endoplasmic reticulum	3.86E-02
34	GO:0005622: intracellular	4.00E-02
35	GO:0046658: anchored component of plasma membrane	4.35E-02