co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G50020

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019878: lysine biosynthetic process via aminoadipic acid	0.00E+00
2	GO:0018215: protein phosphopantetheinylation	0.00E+00
3	GO:0006720: isoprenoid metabolic process	0.00E+00
4	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
5	GO:0036172: thiamine salvage	0.00E+00
6	GO:0032928: regulation of superoxide anion generation	0.00E+00
7	GO:0009661: chromoplast organization	0.00E+00
8	GO:0016120: carotene biosynthetic process	4.66E-07
9	GO:0010190: cytochrome b6f complex assembly	9.09E-07
10	GO:0033365: protein localization to organelle	8.60E-05
11	GO:0016226: iron-sulfur cluster assembly	9.34E-05
12	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	1.19E-04
13	GO:0016117: carotenoid biosynthetic process	1.36E-04
14	GO:0071461: cellular response to redox state	2.27E-04
15	GO:0006430: lysyl-tRNA aminoacylation	2.27E-04
16	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	2.27E-04
17	GO:0097502: mannosylation	2.27E-04
18	GO:0006567: threonine catabolic process	2.27E-04
19	GO:0016487: farnesol metabolic process	2.27E-04
20	GO:0016031: tRNA import into mitochondrion	2.27E-04
21	GO:0071806: protein transmembrane transport	2.27E-04
22	GO:0009658: chloroplast organization	2.86E-04
23	GO:0055114: oxidation-reduction process	4.80E-04
24	GO:0043100: pyrimidine nucleobase salvage	5.05E-04
25	GO:0016122: xanthophyll metabolic process	5.05E-04
26	GO:0010343: singlet oxygen-mediated programmed cell death	5.05E-04
27	GO:0080005: photosystem stoichiometry adjustment	5.05E-04
28	GO:0019388: galactose catabolic process	5.05E-04
29	GO:2000071: regulation of defense response by callose deposition	5.05E-04
30	GO:0006501: C-terminal protein lipidation	5.05E-04
31	GO:1902000: homogentisate catabolic process	5.05E-04
32	GO:1904143: positive regulation of carotenoid biosynthetic process	5.05E-04
33	GO:0009072: aromatic amino acid family metabolic process	8.21E-04
34	GO:0006013: mannose metabolic process	8.21E-04
35	GO:0009150: purine ribonucleotide metabolic process	8.21E-04
36	GO:0006696: ergosterol biosynthetic process	8.21E-04
37	GO:2001141: regulation of RNA biosynthetic process	1.17E-03
38	GO:0006572: tyrosine catabolic process	1.17E-03
39	GO:0009399: nitrogen fixation	1.17E-03
40	GO:0009647: skotomorphogenesis	1.17E-03
41	GO:0009963: positive regulation of flavonoid biosynthetic process	1.17E-03
42	GO:0032981: mitochondrial respiratory chain complex I assembly	1.17E-03
43	GO:0009590: detection of gravity	1.17E-03
44	GO:0050482: arachidonic acid secretion	1.17E-03
45	GO:0006882: cellular zinc ion homeostasis	1.17E-03
46	GO:0044804: nucleophagy	1.56E-03
47	GO:0006542: glutamine biosynthetic process	1.56E-03
48	GO:0070534: protein K63-linked ubiquitination	1.56E-03
49	GO:0006545: glycine biosynthetic process	1.56E-03
50	GO:0006552: leucine catabolic process	1.56E-03
51	GO:0009649: entrainment of circadian clock	1.56E-03
52	GO:0042594: response to starvation	1.56E-03
53	GO:0034613: cellular protein localization	1.56E-03
54	GO:0010021: amylopectin biosynthetic process	1.56E-03
55	GO:0006520: cellular amino acid metabolic process	1.89E-03
56	GO:0009229: thiamine diphosphate biosynthetic process	1.99E-03
57	GO:0000304: response to singlet oxygen	1.99E-03
58	GO:0000422: mitophagy	1.99E-03
59	GO:0010117: photoprotection	1.99E-03
60	GO:0046283: anthocyanin-containing compound metabolic process	1.99E-03
61	GO:0019252: starch biosynthetic process	2.18E-03
62	GO:0006301: postreplication repair	2.45E-03
63	GO:0006555: methionine metabolic process	2.45E-03
64	GO:0007035: vacuolar acidification	2.45E-03
65	GO:0000045: autophagosome assembly	2.45E-03
66	GO:0009228: thiamine biosynthetic process	2.45E-03
67	GO:0009117: nucleotide metabolic process	2.45E-03
68	GO:0019509: L-methionine salvage from methylthioadenosine	2.94E-03
69	GO:0050790: regulation of catalytic activity	3.47E-03
70	GO:0009396: folic acid-containing compound biosynthetic process	3.47E-03
71	GO:0030026: cellular manganese ion homeostasis	3.47E-03
72	GO:0009231: riboflavin biosynthetic process	4.02E-03
73	GO:0006102: isocitrate metabolic process	4.02E-03
74	GO:0006644: phospholipid metabolic process	4.02E-03
75	GO:0048564: photosystem I assembly	4.02E-03
76	GO:0005978: glycogen biosynthetic process	4.02E-03
77	GO:0009787: regulation of abscisic acid-activated signaling pathway	4.02E-03
78	GO:0030091: protein repair	4.02E-03
79	GO:0006605: protein targeting	4.02E-03
80	GO:0009704: de-etiolation	4.02E-03
81	GO:0050821: protein stabilization	4.02E-03
82	GO:0071482: cellular response to light stimulus	4.60E-03
83	GO:0019430: removal of superoxide radicals	4.60E-03
84	GO:0010043: response to zinc ion	5.06E-03
85	GO:0009821: alkaloid biosynthetic process	5.22E-03
86	GO:0009853: photorespiration	5.54E-03
87	GO:0035999: tetrahydrofolate interconversion	5.85E-03
88	GO:1900865: chloroplast RNA modification	5.85E-03
89	GO:0009641: shade avoidance	6.51E-03
90	GO:0055062: phosphate ion homeostasis	6.51E-03
91	GO:0006995: cellular response to nitrogen starvation	6.51E-03
92	GO:0006535: cysteine biosynthetic process from serine	6.51E-03
93	GO:0000103: sulfate assimilation	6.51E-03
94	GO:0009688: abscisic acid biosynthetic process	6.51E-03
95	GO:0048229: gametophyte development	7.20E-03
96	GO:0006816: calcium ion transport	7.20E-03
97	GO:0009682: induced systemic resistance	7.20E-03
98	GO:0006352: DNA-templated transcription, initiation	7.20E-03
99	GO:0006790: sulfur compound metabolic process	7.92E-03
100	GO:0050826: response to freezing	8.66E-03
101	GO:0006006: glucose metabolic process	8.66E-03
102	GO:0048440: carpel development	9.42E-03
103	GO:0090351: seedling development	1.02E-02
104	GO:0019344: cysteine biosynthetic process	1.19E-02
105	GO:0015031: protein transport	1.21E-02
106	GO:0006418: tRNA aminoacylation for protein translation	1.27E-02
107	GO:0061077: chaperone-mediated protein folding	1.36E-02
108	GO:0007005: mitochondrion organization	1.45E-02
109	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.45E-02
110	GO:0009693: ethylene biosynthetic process	1.54E-02
111	GO:0006817: phosphate ion transport	1.64E-02
112	GO:0009058: biosynthetic process	1.82E-02
113	GO:0010118: stomatal movement	1.83E-02
114	GO:0015991: ATP hydrolysis coupled proton transport	1.83E-02
115	GO:0006662: glycerol ether metabolic process	1.93E-02
116	GO:0006508: proteolysis	2.06E-02
117	GO:0008654: phospholipid biosynthetic process	2.14E-02
118	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.24E-02
119	GO:0002229: defense response to oomycetes	2.24E-02
120	GO:1901657: glycosyl compound metabolic process	2.46E-02
121	GO:0030163: protein catabolic process	2.46E-02
122	GO:0006464: cellular protein modification process	2.57E-02
123	GO:0006914: autophagy	2.57E-02
124	GO:0016126: sterol biosynthetic process	2.91E-02
125	GO:0042128: nitrate assimilation	3.15E-02
126	GO:0010411: xyloglucan metabolic process	3.27E-02
127	GO:0048573: photoperiodism, flowering	3.27E-02
128	GO:0006950: response to stress	3.27E-02
129	GO:0008219: cell death	3.52E-02
130	GO:0048481: plant ovule development	3.52E-02
131	GO:0009407: toxin catabolic process	3.77E-02
132	GO:0007568: aging	3.90E-02
133	GO:0048527: lateral root development	3.90E-02
134	GO:0009631: cold acclimation	3.90E-02
135	GO:0010119: regulation of stomatal movement	3.90E-02
136	GO:0009867: jasmonic acid mediated signaling pathway	4.17E-02
137	GO:0006099: tricarboxylic acid cycle	4.30E-02
138	GO:0034599: cellular response to oxidative stress	4.30E-02
139	GO:0009640: photomorphogenesis	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
2	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
3	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
4	GO:0052670: geraniol kinase activity	0.00E+00
5	GO:0052668: farnesol kinase activity	0.00E+00
6	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
7	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
8	GO:0045436: lycopene beta cyclase activity	0.00E+00
9	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
10	GO:0043530: adenosine 5'-monophosphoramidase activity	0.00E+00
11	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
12	GO:0009673: low-affinity phosphate transmembrane transporter activity	0.00E+00
13	GO:0052671: geranylgeraniol kinase activity	0.00E+00
14	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
15	GO:0004334: fumarylacetoacetase activity	0.00E+00
16	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
17	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
18	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
19	GO:0046905: phytoene synthase activity	0.00E+00
20	GO:0047710: bis(5'-adenosyl)-triphosphatase activity	0.00E+00
21	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
22	GO:0008897: holo-[acyl-carrier-protein] synthase activity	0.00E+00
23	GO:0004180: carboxypeptidase activity	8.79E-06
24	GO:0047627: adenylylsulfatase activity	2.00E-05
25	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	2.27E-04
26	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.27E-04
27	GO:0004485: methylcrotonoyl-CoA carboxylase activity	2.27E-04
28	GO:0046480: galactolipid galactosyltransferase activity	2.27E-04
29	GO:0080079: cellobiose glucosidase activity	2.27E-04
30	GO:0004824: lysine-tRNA ligase activity	2.27E-04
31	GO:0015085: calcium ion transmembrane transporter activity	2.27E-04
32	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	2.27E-04
33	GO:0004793: threonine aldolase activity	2.27E-04
34	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	2.27E-04
35	GO:0051996: squalene synthase activity	2.27E-04
36	GO:0016783: sulfurtransferase activity	2.27E-04
37	GO:0008732: L-allo-threonine aldolase activity	2.27E-04
38	GO:0016868: intramolecular transferase activity, phosphotransferases	5.05E-04
39	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	5.05E-04
40	GO:0004047: aminomethyltransferase activity	5.05E-04
41	GO:0033201: alpha-1,4-glucan synthase activity	5.05E-04
42	GO:0004046: aminoacylase activity	5.05E-04
43	GO:0004614: phosphoglucomutase activity	5.05E-04
44	GO:0004450: isocitrate dehydrogenase (NADP+) activity	5.05E-04
45	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.05E-04
46	GO:0015266: protein channel activity	6.27E-04
47	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	8.21E-04
48	GO:0004373: glycogen (starch) synthase activity	8.21E-04
49	GO:0032947: protein complex scaffold	8.21E-04
50	GO:0004848: ureidoglycolate hydrolase activity	8.21E-04
51	GO:0004557: alpha-galactosidase activity	8.21E-04
52	GO:0003935: GTP cyclohydrolase II activity	8.21E-04
53	GO:0004075: biotin carboxylase activity	8.21E-04
54	GO:0009001: serine O-acetyltransferase activity	1.17E-03
55	GO:0000254: C-4 methylsterol oxidase activity	1.17E-03
56	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.17E-03
57	GO:0004792: thiosulfate sulfurtransferase activity	1.17E-03
58	GO:0016656: monodehydroascorbate reductase (NADH) activity	1.17E-03
59	GO:0015368: calcium:cation antiporter activity	1.56E-03
60	GO:0001053: plastid sigma factor activity	1.56E-03
61	GO:0015369: calcium:proton antiporter activity	1.56E-03
62	GO:0016987: sigma factor activity	1.56E-03
63	GO:0009011: starch synthase activity	1.56E-03
64	GO:0019776: Atg8 ligase activity	1.56E-03
65	GO:0004356: glutamate-ammonia ligase activity	1.99E-03
66	GO:0016407: acetyltransferase activity	1.99E-03
67	GO:0004623: phospholipase A2 activity	1.99E-03
68	GO:0004605: phosphatidate cytidylyltransferase activity	2.45E-03
69	GO:0004784: superoxide dismutase activity	2.45E-03
70	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	2.45E-03
71	GO:0003824: catalytic activity	2.79E-03
72	GO:0004559: alpha-mannosidase activity	2.94E-03
73	GO:0070300: phosphatidic acid binding	2.94E-03
74	GO:0016621: cinnamoyl-CoA reductase activity	3.47E-03
75	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	4.02E-03
76	GO:0008236: serine-type peptidase activity	4.16E-03
77	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.38E-03
78	GO:0015078: hydrogen ion transmembrane transporter activity	4.60E-03
79	GO:0071949: FAD binding	5.22E-03
80	GO:0016844: strictosidine synthase activity	5.85E-03
81	GO:0004129: cytochrome-c oxidase activity	7.20E-03
82	GO:0046961: proton-transporting ATPase activity, rotational mechanism	7.20E-03
83	GO:0000287: magnesium ion binding	7.53E-03
84	GO:0008378: galactosyltransferase activity	7.92E-03
85	GO:0005198: structural molecule activity	8.03E-03
86	GO:0031072: heat shock protein binding	8.66E-03
87	GO:0005315: inorganic phosphate transmembrane transporter activity	8.66E-03
88	GO:0016787: hydrolase activity	1.03E-02
89	GO:0051536: iron-sulfur cluster binding	1.19E-02
90	GO:0005528: FK506 binding	1.19E-02
91	GO:0016491: oxidoreductase activity	1.29E-02
92	GO:0004176: ATP-dependent peptidase activity	1.36E-02
93	GO:0051082: unfolded protein binding	1.38E-02
94	GO:0047134: protein-disulfide reductase activity	1.73E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	1.73E-02
96	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.77E-02
97	GO:0008080: N-acetyltransferase activity	1.93E-02
98	GO:0004791: thioredoxin-disulfide reductase activity	2.03E-02
99	GO:0050662: coenzyme binding	2.03E-02
100	GO:0048038: quinone binding	2.24E-02
101	GO:0008137: NADH dehydrogenase (ubiquinone) activity	2.24E-02
102	GO:0004197: cysteine-type endopeptidase activity	2.35E-02
103	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.46E-02
104	GO:0005506: iron ion binding	2.58E-02
105	GO:0008483: transaminase activity	2.68E-02
106	GO:0008237: metallopeptidase activity	2.68E-02
107	GO:0016413: O-acetyltransferase activity	2.80E-02
108	GO:0016887: ATPase activity	2.88E-02
109	GO:0004222: metalloendopeptidase activity	3.77E-02
110	GO:0050897: cobalt ion binding	3.90E-02
111	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.17E-02
112	GO:0008422: beta-glucosidase activity	4.43E-02
113	GO:0008233: peptidase activity	4.48E-02
114	GO:0061630: ubiquitin protein ligase activity	4.79E-02
115	GO:0004364: glutathione transferase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.57E-13
2	GO:0005747: mitochondrial respiratory chain complex I	2.52E-05
3	GO:0000152: nuclear ubiquitin ligase complex	2.27E-04
4	GO:0009941: chloroplast envelope	3.45E-04
5	GO:0031969: chloroplast membrane	4.27E-04
6	GO:0005773: vacuole	5.04E-04
7	GO:0034274: Atg12-Atg5-Atg16 complex	5.05E-04
8	GO:0005759: mitochondrial matrix	6.88E-04
9	GO:0009528: plastid inner membrane	8.21E-04
10	GO:0009509: chromoplast	8.21E-04
11	GO:0042651: thylakoid membrane	1.06E-03
12	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.50E-03
13	GO:0009527: plastid outer membrane	1.56E-03
14	GO:0031372: UBC13-MMS2 complex	1.56E-03
15	GO:0009517: PSII associated light-harvesting complex II	1.56E-03
16	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.56E-03
17	GO:0009526: plastid envelope	1.56E-03
18	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.99E-03
19	GO:0005739: mitochondrion	2.74E-03
20	GO:0031359: integral component of chloroplast outer membrane	3.47E-03
21	GO:0009501: amyloplast	4.02E-03
22	GO:0034045: pre-autophagosomal structure membrane	4.60E-03
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.22E-03
24	GO:0016604: nuclear body	5.85E-03
25	GO:0005764: lysosome	9.42E-03
26	GO:0009535: chloroplast thylakoid membrane	1.13E-02
27	GO:0009536: plastid	1.14E-02
28	GO:0005758: mitochondrial intermembrane space	1.19E-02
29	GO:0045271: respiratory chain complex I	1.27E-02
30	GO:0009706: chloroplast inner membrane	1.38E-02
31	GO:0009570: chloroplast stroma	1.55E-02
32	GO:0005829: cytosol	2.26E-02
33	GO:0005778: peroxisomal membrane	2.68E-02
34	GO:0010319: stromule	2.68E-02
35	GO:0005737: cytoplasm	2.96E-02
36	GO:0009707: chloroplast outer membrane	3.52E-02
37	GO:0005777: peroxisome	4.05E-02
38	GO:0031977: thylakoid lumen	4.71E-02