co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044843: cell cycle G1/S phase transition	0.00E+00
2	GO:1904874: positive regulation of telomerase RNA localization to Cajal body	0.00E+00
3	GO:0006412: translation	1.03E-50
4	GO:0042254: ribosome biogenesis	4.12E-19
5	GO:0000027: ribosomal large subunit assembly	1.22E-07
6	GO:0000028: ribosomal small subunit assembly	5.57E-05
7	GO:0031120: snRNA pseudouridine synthesis	9.88E-05
8	GO:0031118: rRNA pseudouridine synthesis	9.88E-05
9	GO:0015801: aromatic amino acid transport	9.88E-05
10	GO:0030490: maturation of SSU-rRNA	9.88E-05
11	GO:0000494: box C/D snoRNA 3'-end processing	9.88E-05
12	GO:1990258: histone glutamine methylation	9.88E-05
13	GO:0000387: spliceosomal snRNP assembly	1.06E-04
14	GO:2000072: regulation of defense response to fungus, incompatible interaction	2.32E-04
15	GO:0048569: post-embryonic animal organ development	2.32E-04
16	GO:0006364: rRNA processing	3.31E-04
17	GO:0007004: telomere maintenance via telomerase	5.54E-04
18	GO:0006164: purine nucleotide biosynthetic process	5.54E-04
19	GO:0000398: mRNA splicing, via spliceosome	6.24E-04
20	GO:0010197: polar nucleus fusion	6.24E-04
21	GO:0080156: mitochondrial mRNA modification	7.65E-04
22	GO:0031167: rRNA methylation	9.32E-04
23	GO:0000470: maturation of LSU-rRNA	1.14E-03
24	GO:0000741: karyogamy	1.14E-03
25	GO:0000245: spliceosomal complex assembly	1.36E-03
26	GO:0016444: somatic cell DNA recombination	1.36E-03
27	GO:0009955: adaxial/abaxial pattern specification	1.36E-03
28	GO:0001522: pseudouridine synthesis	1.84E-03
29	GO:0035265: organ growth	1.84E-03
30	GO:0001558: regulation of cell growth	2.10E-03
31	GO:0001510: RNA methylation	2.10E-03
32	GO:0008283: cell proliferation	2.27E-03
33	GO:0006189: 'de novo' IMP biosynthetic process	2.37E-03
34	GO:0007338: single fertilization	2.37E-03
35	GO:0048507: meristem development	2.37E-03
36	GO:0006626: protein targeting to mitochondrion	3.89E-03
37	GO:0006446: regulation of translational initiation	4.22E-03
38	GO:0051302: regulation of cell division	5.65E-03
39	GO:0003333: amino acid transmembrane transport	6.03E-03
40	GO:0006334: nucleosome assembly	6.03E-03
41	GO:0042127: regulation of cell proliferation	7.23E-03
42	GO:0008033: tRNA processing	8.07E-03
43	GO:0000413: protein peptidyl-prolyl isomerization	8.07E-03
44	GO:0006635: fatty acid beta-oxidation	9.85E-03
45	GO:0009567: double fertilization forming a zygote and endosperm	1.13E-02
46	GO:0010311: lateral root formation	1.60E-02
47	GO:0000724: double-strand break repair via homologous recombination	1.76E-02
48	GO:0006865: amino acid transport	1.76E-02
49	GO:0006099: tricarboxylic acid cycle	1.88E-02
50	GO:0009644: response to high light intensity	2.31E-02
51	GO:0009965: leaf morphogenesis	2.37E-02
52	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	2.50E-02
53	GO:0015031: protein transport	2.60E-02
54	GO:0009409: response to cold	2.81E-02
55	GO:0009908: flower development	3.39E-02
56	GO:0009553: embryo sac development	3.39E-02
57	GO:0009735: response to cytokinin	3.43E-02
58	GO:0051726: regulation of cell cycle	3.62E-02
59	GO:0006457: protein folding	4.83E-02
60	GO:0006413: translational initiation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0034513: box H/ACA snoRNA binding	0.00E+00
2	GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity	0.00E+00
3	GO:0003735: structural constituent of ribosome	1.25E-59
4	GO:0003723: RNA binding	1.19E-10
5	GO:0003729: mRNA binding	1.30E-07
6	GO:0019843: rRNA binding	1.32E-07
7	GO:0030515: snoRNA binding	4.27E-05
8	GO:0048037: cofactor binding	9.88E-05
9	GO:1990259: histone-glutamine methyltransferase activity	9.88E-05
10	GO:0043141: ATP-dependent 5'-3' DNA helicase activity	2.32E-04
11	GO:0004776: succinate-CoA ligase (GDP-forming) activity	2.32E-04
12	GO:0015173: aromatic amino acid transmembrane transporter activity	2.32E-04
13	GO:0070034: telomerase RNA binding	2.32E-04
14	GO:0004775: succinate-CoA ligase (ADP-forming) activity	2.32E-04
15	GO:0008649: rRNA methyltransferase activity	3.86E-04
16	GO:0008097: 5S rRNA binding	5.54E-04
17	GO:0005275: amine transmembrane transporter activity	9.32E-04
18	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.14E-03
19	GO:0008235: metalloexopeptidase activity	1.59E-03
20	GO:0043022: ribosome binding	1.84E-03
21	GO:0001055: RNA polymerase II activity	2.65E-03
22	GO:0001054: RNA polymerase I activity	3.25E-03
23	GO:0044183: protein binding involved in protein folding	3.25E-03
24	GO:0001056: RNA polymerase III activity	3.57E-03
25	GO:0005507: copper ion binding	1.23E-02
26	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.54E-02
27	GO:0003697: single-stranded DNA binding	1.82E-02
28	GO:0042393: histone binding	2.00E-02
29	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.44E-02
30	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.70E-02
31	GO:0051082: unfolded protein binding	3.47E-02

Rank	GO Term	Adjusted P value
1	GO:0090661: box H/ACA telomerase RNP complex	0.00E+00
2	GO:0072589: box H/ACA scaRNP complex	0.00E+00
3	GO:0022626: cytosolic ribosome	9.01E-44
4	GO:0005840: ribosome	2.24E-40
5	GO:0022625: cytosolic large ribosomal subunit	4.23E-31
6	GO:0022627: cytosolic small ribosomal subunit	1.79E-21
7	GO:0005829: cytosol	1.54E-14
8	GO:0005730: nucleolus	1.65E-14
9	GO:0015934: large ribosomal subunit	4.82E-13
10	GO:0005737: cytoplasm	8.42E-07
11	GO:0015030: Cajal body	1.47E-06
12	GO:0009506: plasmodesma	1.99E-06
13	GO:0005774: vacuolar membrane	5.66E-06
14	GO:0019013: viral nucleocapsid	1.98E-04
15	GO:0071010: prespliceosome	2.32E-04
16	GO:0015935: small ribosomal subunit	3.84E-04
17	GO:0034715: pICln-Sm protein complex	3.86E-04
18	GO:0034719: SMN-Sm protein complex	3.86E-04
19	GO:0031429: box H/ACA snoRNP complex	5.54E-04
20	GO:0005773: vacuole	5.75E-04
21	GO:0005732: small nucleolar ribonucleoprotein complex	5.81E-04
22	GO:0005682: U5 snRNP	7.37E-04
23	GO:0005687: U4 snRNP	9.32E-04
24	GO:0097526: spliceosomal tri-snRNP complex	9.32E-04
25	GO:0016020: membrane	1.03E-03
26	GO:0030529: intracellular ribonucleoprotein complex	1.09E-03
27	GO:0031428: box C/D snoRNP complex	1.14E-03
28	GO:0000243: commitment complex	1.14E-03
29	GO:0009507: chloroplast	1.14E-03
30	GO:0005689: U12-type spliceosomal complex	1.36E-03
31	GO:0016272: prefoldin complex	1.36E-03
32	GO:0005742: mitochondrial outer membrane translocase complex	2.10E-03
33	GO:0005736: DNA-directed RNA polymerase I complex	2.37E-03
34	GO:0005685: U1 snRNP	2.37E-03
35	GO:0005666: DNA-directed RNA polymerase III complex	2.65E-03
36	GO:0071011: precatalytic spliceosome	2.65E-03
37	GO:0016604: nuclear body	2.65E-03
38	GO:0005686: U2 snRNP	2.95E-03
39	GO:0000418: DNA-directed RNA polymerase IV complex	2.95E-03
40	GO:0071013: catalytic step 2 spliceosome	3.25E-03
41	GO:0005852: eukaryotic translation initiation factor 3 complex	3.25E-03
42	GO:0032040: small-subunit processome	3.57E-03
43	GO:0005665: DNA-directed RNA polymerase II, core complex	3.57E-03
44	GO:0005681: spliceosomal complex	3.59E-03
45	GO:0005747: mitochondrial respiratory chain complex I	3.70E-03
46	GO:0005758: mitochondrial intermembrane space	5.28E-03
47	GO:0005739: mitochondrion	6.20E-03
48	GO:0005622: intracellular	1.63E-02
49	GO:0005886: plasma membrane	2.22E-02
50	GO:0009536: plastid	2.49E-02
51	GO:0009706: chloroplast inner membrane	3.47E-02
52	GO:0005654: nucleoplasm	3.99E-02
53	GO:0009543: chloroplast thylakoid lumen	4.07E-02
54	GO:0005759: mitochondrial matrix	4.78E-02