co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G49140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0010477: response to sulfur dioxide	0.00E+00
5	GO:1901965: endoplasmic reticulum to chloroplast transport	0.00E+00
6	GO:0009661: chromoplast organization	0.00E+00
7	GO:0005997: xylulose metabolic process	0.00E+00
8	GO:0080005: photosystem stoichiometry adjustment	1.85E-06
9	GO:0000256: allantoin catabolic process	1.85E-06
10	GO:0010136: ureide catabolic process	6.80E-06
11	GO:0006145: purine nucleobase catabolic process	1.57E-05
12	GO:0009767: photosynthetic electron transport chain	2.11E-05
13	GO:0009658: chloroplast organization	2.24E-05
14	GO:0015994: chlorophyll metabolic process	2.88E-05
15	GO:0016120: carotene biosynthetic process	4.65E-05
16	GO:0010190: cytochrome b6f complex assembly	6.86E-05
17	GO:0009643: photosynthetic acclimation	6.86E-05
18	GO:0009644: response to high light intensity	9.05E-05
19	GO:0010189: vitamin E biosynthetic process	9.52E-05
20	GO:0042371: vitamin K biosynthetic process	1.98E-04
21	GO:0071461: cellular response to redox state	1.98E-04
22	GO:0010362: negative regulation of anion channel activity by blue light	1.98E-04
23	GO:0033388: putrescine biosynthetic process from arginine	1.98E-04
24	GO:1904966: positive regulation of vitamin E biosynthetic process	1.98E-04
25	GO:1990052: ER to chloroplast lipid transport	1.98E-04
26	GO:0071806: protein transmembrane transport	1.98E-04
27	GO:1904964: positive regulation of phytol biosynthetic process	1.98E-04
28	GO:0018298: protein-chromophore linkage	4.09E-04
29	GO:1904143: positive regulation of carotenoid biosynthetic process	4.43E-04
30	GO:0016122: xanthophyll metabolic process	4.43E-04
31	GO:0080185: effector dependent induction by symbiont of host immune response	4.43E-04
32	GO:0046741: transport of virus in host, tissue to tissue	4.43E-04
33	GO:0009915: phloem sucrose loading	4.43E-04
34	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.43E-04
35	GO:0042548: regulation of photosynthesis, light reaction	4.43E-04
36	GO:0006435: threonyl-tRNA aminoacylation	4.43E-04
37	GO:0010115: regulation of abscisic acid biosynthetic process	4.43E-04
38	GO:0048314: embryo sac morphogenesis	4.43E-04
39	GO:0009446: putrescine biosynthetic process	4.43E-04
40	GO:0010207: photosystem II assembly	5.82E-04
41	GO:0006013: mannose metabolic process	7.22E-04
42	GO:0006954: inflammatory response	7.22E-04
43	GO:0007017: microtubule-based process	8.81E-04
44	GO:0031347: regulation of defense response	9.66E-04
45	GO:0055114: oxidation-reduction process	1.02E-03
46	GO:2001141: regulation of RNA biosynthetic process	1.03E-03
47	GO:0071484: cellular response to light intensity	1.03E-03
48	GO:0046653: tetrahydrofolate metabolic process	1.03E-03
49	GO:0051016: barbed-end actin filament capping	1.03E-03
50	GO:0050482: arachidonic acid secretion	1.03E-03
51	GO:0043572: plastid fission	1.03E-03
52	GO:0009765: photosynthesis, light harvesting	1.37E-03
53	GO:0009902: chloroplast relocation	1.37E-03
54	GO:0016123: xanthophyll biosynthetic process	1.74E-03
55	GO:0010117: photoprotection	1.74E-03
56	GO:0045038: protein import into chloroplast thylakoid membrane	1.74E-03
57	GO:0015979: photosynthesis	1.91E-03
58	GO:0006561: proline biosynthetic process	2.14E-03
59	GO:0042549: photosystem II stabilization	2.14E-03
60	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.14E-03
61	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	2.14E-03
62	GO:0010038: response to metal ion	3.03E-03
63	GO:0048528: post-embryonic root development	3.03E-03
64	GO:1900056: negative regulation of leaf senescence	3.03E-03
65	GO:0009396: folic acid-containing compound biosynthetic process	3.03E-03
66	GO:0042128: nitrate assimilation	3.07E-03
67	GO:0015995: chlorophyll biosynthetic process	3.24E-03
68	GO:0007623: circadian rhythm	3.43E-03
69	GO:0050821: protein stabilization	3.51E-03
70	GO:0006644: phospholipid metabolic process	3.51E-03
71	GO:0048564: photosystem I assembly	3.51E-03
72	GO:0009642: response to light intensity	3.51E-03
73	GO:0030091: protein repair	3.51E-03
74	GO:0006605: protein targeting	3.51E-03
75	GO:0046686: response to cadmium ion	3.73E-03
76	GO:0071482: cellular response to light stimulus	4.02E-03
77	GO:0009657: plastid organization	4.02E-03
78	GO:0032544: plastid translation	4.02E-03
79	GO:0044030: regulation of DNA methylation	4.02E-03
80	GO:0007568: aging	4.15E-03
81	GO:0009821: alkaloid biosynthetic process	4.54E-03
82	GO:0000373: Group II intron splicing	4.54E-03
83	GO:1900426: positive regulation of defense response to bacterium	5.10E-03
84	GO:0009638: phototropism	5.10E-03
85	GO:0035999: tetrahydrofolate interconversion	5.10E-03
86	GO:0010380: regulation of chlorophyll biosynthetic process	5.10E-03
87	GO:0045036: protein targeting to chloroplast	5.67E-03
88	GO:0006259: DNA metabolic process	5.67E-03
89	GO:0009688: abscisic acid biosynthetic process	5.67E-03
90	GO:0009773: photosynthetic electron transport in photosystem I	6.27E-03
91	GO:0006265: DNA topological change	6.27E-03
92	GO:1903507: negative regulation of nucleic acid-templated transcription	6.27E-03
93	GO:0006352: DNA-templated transcription, initiation	6.27E-03
94	GO:0009750: response to fructose	6.27E-03
95	GO:0006790: sulfur compound metabolic process	6.89E-03
96	GO:0009725: response to hormone	7.52E-03
97	GO:0005986: sucrose biosynthetic process	7.52E-03
98	GO:0006807: nitrogen compound metabolic process	7.52E-03
99	GO:0006364: rRNA processing	7.88E-03
100	GO:0009266: response to temperature stimulus	8.19E-03
101	GO:0010020: chloroplast fission	8.19E-03
102	GO:0090351: seedling development	8.87E-03
103	GO:0006071: glycerol metabolic process	9.57E-03
104	GO:0009863: salicylic acid mediated signaling pathway	1.03E-02
105	GO:0051302: regulation of cell division	1.10E-02
106	GO:0051321: meiotic cell cycle	1.18E-02
107	GO:0006366: transcription from RNA polymerase II promoter	1.18E-02
108	GO:0006730: one-carbon metabolic process	1.26E-02
109	GO:0016226: iron-sulfur cluster assembly	1.26E-02
110	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.26E-02
111	GO:0009306: protein secretion	1.42E-02
112	GO:0016117: carotenoid biosynthetic process	1.50E-02
113	GO:0010118: stomatal movement	1.59E-02
114	GO:0042335: cuticle development	1.59E-02
115	GO:0010182: sugar mediated signaling pathway	1.67E-02
116	GO:0006662: glycerol ether metabolic process	1.67E-02
117	GO:0007059: chromosome segregation	1.76E-02
118	GO:0008654: phospholipid biosynthetic process	1.85E-02
119	GO:0009791: post-embryonic development	1.85E-02
120	GO:0000302: response to reactive oxygen species	1.94E-02
121	GO:0006464: cellular protein modification process	2.23E-02
122	GO:0009816: defense response to bacterium, incompatible interaction	2.63E-02
123	GO:0006950: response to stress	2.84E-02
124	GO:0000160: phosphorelay signal transduction system	3.16E-02
125	GO:0006811: ion transport	3.27E-02
126	GO:0010043: response to zinc ion	3.38E-02
127	GO:0009910: negative regulation of flower development	3.38E-02
128	GO:0000724: double-strand break repair via homologous recombination	3.50E-02
129	GO:0009637: response to blue light	3.61E-02
130	GO:0009853: photorespiration	3.61E-02
131	GO:0006457: protein folding	3.66E-02
132	GO:0034599: cellular response to oxidative stress	3.73E-02
133	GO:0046777: protein autophosphorylation	3.99E-02
134	GO:0006631: fatty acid metabolic process	4.08E-02
135	GO:0010114: response to red light	4.32E-02
136	GO:0009744: response to sucrose	4.32E-02
137	GO:0051707: response to other organism	4.32E-02
138	GO:0045454: cell redox homeostasis	4.46E-02
139	GO:0009636: response to toxic substance	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
4	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
5	GO:0010301: xanthoxin dehydrogenase activity	0.00E+00
6	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
7	GO:0009976: tocopherol cyclase activity	0.00E+00
8	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
9	GO:0010276: phytol kinase activity	0.00E+00
10	GO:0008482: sulfite oxidase activity	0.00E+00
11	GO:0016491: oxidoreductase activity	3.99E-05
12	GO:0008080: N-acetyltransferase activity	1.28E-04
13	GO:0030941: chloroplast targeting sequence binding	1.98E-04
14	GO:0035671: enone reductase activity	1.98E-04
15	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.98E-04
16	GO:0004856: xylulokinase activity	1.98E-04
17	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	4.43E-04
18	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	4.43E-04
19	GO:0004046: aminoacylase activity	4.43E-04
20	GO:0004829: threonine-tRNA ligase activity	4.43E-04
21	GO:0004180: carboxypeptidase activity	7.22E-04
22	GO:0010277: chlorophyllide a oxygenase [overall] activity	7.22E-04
23	GO:0003913: DNA photolyase activity	7.22E-04
24	GO:0032947: protein complex scaffold	7.22E-04
25	GO:0004848: ureidoglycolate hydrolase activity	7.22E-04
26	GO:0004148: dihydrolipoyl dehydrogenase activity	7.22E-04
27	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	7.22E-04
28	GO:0050307: sucrose-phosphate phosphatase activity	7.22E-04
29	GO:0051537: 2 iron, 2 sulfur cluster binding	8.42E-04
30	GO:0009882: blue light photoreceptor activity	1.03E-03
31	GO:0004416: hydroxyacylglutathione hydrolase activity	1.03E-03
32	GO:0016851: magnesium chelatase activity	1.03E-03
33	GO:0022891: substrate-specific transmembrane transporter activity	1.14E-03
34	GO:0001053: plastid sigma factor activity	1.37E-03
35	GO:0005319: lipid transporter activity	1.37E-03
36	GO:0051861: glycolipid binding	1.37E-03
37	GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity	1.37E-03
38	GO:0016987: sigma factor activity	1.37E-03
39	GO:0043495: protein anchor	1.37E-03
40	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.37E-03
41	GO:0016853: isomerase activity	1.67E-03
42	GO:0030151: molybdenum ion binding	1.74E-03
43	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.74E-03
44	GO:0004623: phospholipase A2 activity	1.74E-03
45	GO:0048038: quinone binding	1.92E-03
46	GO:0004605: phosphatidate cytidylyltransferase activity	2.14E-03
47	GO:0000293: ferric-chelate reductase activity	2.14E-03
48	GO:0008237: metallopeptidase activity	2.46E-03
49	GO:0004559: alpha-mannosidase activity	2.57E-03
50	GO:0016168: chlorophyll binding	2.91E-03
51	GO:0019899: enzyme binding	3.03E-03
52	GO:0009055: electron carrier activity	3.14E-03
53	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	4.02E-03
54	GO:0008889: glycerophosphodiester phosphodiesterase activity	4.54E-03
55	GO:0042802: identical protein binding	4.65E-03
56	GO:0016844: strictosidine synthase activity	5.10E-03
57	GO:0045309: protein phosphorylated amino acid binding	5.10E-03
58	GO:0005506: iron ion binding	5.48E-03
59	GO:0019904: protein domain specific binding	6.27E-03
60	GO:0031072: heat shock protein binding	7.52E-03
61	GO:0000155: phosphorelay sensor kinase activity	7.52E-03
62	GO:0004022: alcohol dehydrogenase (NAD) activity	7.52E-03
63	GO:0003777: microtubule motor activity	8.73E-03
64	GO:0051536: iron-sulfur cluster binding	1.03E-02
65	GO:0001046: core promoter sequence-specific DNA binding	1.03E-02
66	GO:0003714: transcription corepressor activity	1.03E-02
67	GO:0004176: ATP-dependent peptidase activity	1.18E-02
68	GO:0003727: single-stranded RNA binding	1.42E-02
69	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.45E-02
70	GO:0047134: protein-disulfide reductase activity	1.50E-02
71	GO:0004791: thioredoxin-disulfide reductase activity	1.76E-02
72	GO:0010181: FMN binding	1.76E-02
73	GO:0004872: receptor activity	1.85E-02
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.13E-02
75	GO:0016887: ATPase activity	2.24E-02
76	GO:0008483: transaminase activity	2.33E-02
77	GO:0008236: serine-type peptidase activity	2.94E-02
78	GO:0004222: metalloendopeptidase activity	3.27E-02
79	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.38E-02
80	GO:0050897: cobalt ion binding	3.38E-02
81	GO:0005507: copper ion binding	4.12E-02
82	GO:0004364: glutathione transferase activity	4.20E-02
83	GO:0043621: protein self-association	4.57E-02
84	GO:0005198: structural molecule activity	4.70E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.30E-31
2	GO:0009535: chloroplast thylakoid membrane	8.29E-16
3	GO:0009941: chloroplast envelope	3.97E-08
4	GO:0009534: chloroplast thylakoid	1.80E-07
5	GO:0031969: chloroplast membrane	3.60E-06
6	GO:0030286: dynein complex	2.88E-05
7	GO:0042651: thylakoid membrane	5.18E-05
8	GO:0009523: photosystem II	1.57E-04
9	GO:0031972: chloroplast intermembrane space	1.98E-04
10	GO:0009706: chloroplast inner membrane	2.46E-04
11	GO:0009707: chloroplast outer membrane	4.09E-04
12	GO:0080085: signal recognition particle, chloroplast targeting	4.43E-04
13	GO:0008290: F-actin capping protein complex	4.43E-04
14	GO:0009570: chloroplast stroma	5.13E-04
15	GO:0031977: thylakoid lumen	6.89E-04
16	GO:0009528: plastid inner membrane	7.22E-04
17	GO:0010007: magnesium chelatase complex	7.22E-04
18	GO:0033281: TAT protein transport complex	7.22E-04
19	GO:0005875: microtubule associated complex	7.25E-04
20	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.37E-03
21	GO:0009536: plastid	2.33E-03
22	GO:0009295: nucleoid	2.46E-03
23	GO:0031359: integral component of chloroplast outer membrane	3.03E-03
24	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	4.02E-03
25	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.54E-03
26	GO:0009508: plastid chromosome	7.52E-03
27	GO:0009654: photosystem II oxygen evolving complex	1.10E-02
28	GO:0010287: plastoglobule	1.34E-02
29	GO:0009543: chloroplast thylakoid lumen	1.41E-02
30	GO:0005623: cell	1.45E-02
31	GO:0005759: mitochondrial matrix	1.77E-02
32	GO:0019898: extrinsic component of membrane	1.85E-02
33	GO:0005778: peroxisomal membrane	2.33E-02
34	GO:0010319: stromule	2.33E-02
35	GO:0009505: plant-type cell wall	2.73E-02
36	GO:0009579: thylakoid	3.32E-02