co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G48850

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043201: response to leucine	0.00E+00
2	GO:0006005: L-fucose biosynthetic process	0.00E+00
3	GO:0090069: regulation of ribosome biogenesis	0.00E+00
4	GO:0080053: response to phenylalanine	0.00E+00
5	GO:0080052: response to histidine	0.00E+00
6	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
7	GO:0033587: shikimate biosynthetic process	0.00E+00
8	GO:0048867: stem cell fate determination	0.00E+00
9	GO:0045730: respiratory burst	0.00E+00
10	GO:0043462: regulation of ATPase activity	0.00E+00
11	GO:0009809: lignin biosynthetic process	3.42E-06
12	GO:0009073: aromatic amino acid family biosynthetic process	6.71E-06
13	GO:0009423: chorismate biosynthetic process	6.00E-05
14	GO:0046686: response to cadmium ion	9.85E-05
15	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	1.04E-04
16	GO:0043547: positive regulation of GTPase activity	1.48E-04
17	GO:0080173: male-female gamete recognition during double fertilization	1.48E-04
18	GO:1902182: shoot apical meristem development	1.48E-04
19	GO:0006007: glucose catabolic process	1.48E-04
20	GO:2000232: regulation of rRNA processing	1.48E-04
21	GO:0009968: negative regulation of signal transduction	1.48E-04
22	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	1.48E-04
23	GO:0009820: alkaloid metabolic process	1.48E-04
24	GO:0042350: GDP-L-fucose biosynthetic process	1.48E-04
25	GO:0006098: pentose-phosphate shunt	1.60E-04
26	GO:0006457: protein folding	2.75E-04
27	GO:0000266: mitochondrial fission	3.05E-04
28	GO:0019521: D-gluconate metabolic process	3.38E-04
29	GO:0010372: positive regulation of gibberellin biosynthetic process	3.38E-04
30	GO:0019632: shikimate metabolic process	3.38E-04
31	GO:0010163: high-affinity potassium ion import	3.38E-04
32	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	3.38E-04
33	GO:0015865: purine nucleotide transport	3.38E-04
34	GO:0042939: tripeptide transport	3.38E-04
35	GO:0030187: melatonin biosynthetic process	3.38E-04
36	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.38E-04
37	GO:0031204: posttranslational protein targeting to membrane, translocation	3.38E-04
38	GO:0009805: coumarin biosynthetic process	3.38E-04
39	GO:0051262: protein tetramerization	3.38E-04
40	GO:1902066: regulation of cell wall pectin metabolic process	3.38E-04
41	GO:0034470: ncRNA processing	3.38E-04
42	GO:0006099: tricarboxylic acid cycle	3.49E-04
43	GO:0080147: root hair cell development	5.43E-04
44	GO:0048586: regulation of long-day photoperiodism, flowering	5.54E-04
45	GO:0032922: circadian regulation of gene expression	5.54E-04
46	GO:1901672: positive regulation of systemic acquired resistance	5.54E-04
47	GO:0006556: S-adenosylmethionine biosynthetic process	5.54E-04
48	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	5.54E-04
49	GO:0006065: UDP-glucuronate biosynthetic process	5.54E-04
50	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	5.54E-04
51	GO:0052546: cell wall pectin metabolic process	5.54E-04
52	GO:0046902: regulation of mitochondrial membrane permeability	7.93E-04
53	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	7.93E-04
54	GO:0010104: regulation of ethylene-activated signaling pathway	7.93E-04
55	GO:0009561: megagametogenesis	8.44E-04
56	GO:0010501: RNA secondary structure unwinding	9.81E-04
57	GO:0006085: acetyl-CoA biosynthetic process	1.05E-03
58	GO:0033356: UDP-L-arabinose metabolic process	1.05E-03
59	GO:0042938: dipeptide transport	1.05E-03
60	GO:0080037: negative regulation of cytokinin-activated signaling pathway	1.05E-03
61	GO:0033320: UDP-D-xylose biosynthetic process	1.05E-03
62	GO:0009164: nucleoside catabolic process	1.33E-03
63	GO:2000762: regulation of phenylpropanoid metabolic process	1.33E-03
64	GO:0009408: response to heat	1.52E-03
65	GO:0042732: D-xylose metabolic process	1.63E-03
66	GO:0033365: protein localization to organelle	1.63E-03
67	GO:0009911: positive regulation of flower development	1.85E-03
68	GO:0006413: translational initiation	1.87E-03
69	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.96E-03
70	GO:0015977: carbon fixation	1.96E-03
71	GO:0048573: photoperiodism, flowering	2.17E-03
72	GO:0000338: protein deneddylation	2.30E-03
73	GO:0071669: plant-type cell wall organization or biogenesis	2.30E-03
74	GO:0098869: cellular oxidant detoxification	2.30E-03
75	GO:0006402: mRNA catabolic process	2.66E-03
76	GO:0030162: regulation of proteolysis	2.66E-03
77	GO:0006875: cellular metal ion homeostasis	2.66E-03
78	GO:0000028: ribosomal small subunit assembly	2.66E-03
79	GO:0010100: negative regulation of photomorphogenesis	3.04E-03
80	GO:0009808: lignin metabolic process	3.04E-03
81	GO:0034765: regulation of ion transmembrane transport	3.44E-03
82	GO:0006754: ATP biosynthetic process	3.44E-03
83	GO:0015780: nucleotide-sugar transport	3.44E-03
84	GO:0007338: single fertilization	3.44E-03
85	GO:0042254: ribosome biogenesis	3.65E-03
86	GO:0008202: steroid metabolic process	3.86E-03
87	GO:0051555: flavonol biosynthetic process	4.29E-03
88	GO:0006896: Golgi to vacuole transport	4.29E-03
89	GO:0006032: chitin catabolic process	4.29E-03
90	GO:0006913: nucleocytoplasmic transport	4.73E-03
91	GO:0015706: nitrate transport	5.20E-03
92	GO:0010152: pollen maturation	5.20E-03
93	GO:0006364: rRNA processing	5.25E-03
94	GO:0006857: oligopeptide transport	5.62E-03
95	GO:0006108: malate metabolic process	5.68E-03
96	GO:0055046: microgametogenesis	5.68E-03
97	GO:0005975: carbohydrate metabolic process	5.70E-03
98	GO:0009909: regulation of flower development	5.81E-03
99	GO:0034605: cellular response to heat	6.17E-03
100	GO:0002237: response to molecule of bacterial origin	6.17E-03
101	GO:0006096: glycolytic process	6.20E-03
102	GO:0010167: response to nitrate	6.67E-03
103	GO:0009225: nucleotide-sugar metabolic process	6.67E-03
104	GO:0009553: embryo sac development	7.24E-03
105	GO:0032259: methylation	7.26E-03
106	GO:0006406: mRNA export from nucleus	7.74E-03
107	GO:0006874: cellular calcium ion homeostasis	8.29E-03
108	GO:0010073: meristem maintenance	8.29E-03
109	GO:0051302: regulation of cell division	8.29E-03
110	GO:0008152: metabolic process	8.68E-03
111	GO:0009269: response to desiccation	8.85E-03
112	GO:0016998: cell wall macromolecule catabolic process	8.85E-03
113	GO:0048511: rhythmic process	8.85E-03
114	GO:0016226: iron-sulfur cluster assembly	9.43E-03
115	GO:2000022: regulation of jasmonic acid mediated signaling pathway	9.43E-03
116	GO:0006730: one-carbon metabolic process	9.43E-03
117	GO:0042127: regulation of cell proliferation	1.06E-02
118	GO:0009306: protein secretion	1.06E-02
119	GO:0042744: hydrogen peroxide catabolic process	1.07E-02
120	GO:0042391: regulation of membrane potential	1.19E-02
121	GO:0010118: stomatal movement	1.19E-02
122	GO:0015991: ATP hydrolysis coupled proton transport	1.19E-02
123	GO:0016036: cellular response to phosphate starvation	1.21E-02
124	GO:0010182: sugar mediated signaling pathway	1.25E-02
125	GO:0006342: chromatin silencing	1.25E-02
126	GO:0009741: response to brassinosteroid	1.25E-02
127	GO:0010150: leaf senescence	1.29E-02
128	GO:0009749: response to glucose	1.39E-02
129	GO:0071554: cell wall organization or biogenesis	1.45E-02
130	GO:0031047: gene silencing by RNA	1.52E-02
131	GO:0010468: regulation of gene expression	1.55E-02
132	GO:0009555: pollen development	1.59E-02
133	GO:0009611: response to wounding	1.63E-02
134	GO:0009567: double fertilization forming a zygote and endosperm	1.67E-02
135	GO:0016579: protein deubiquitination	1.81E-02
136	GO:0001666: response to hypoxia	1.89E-02
137	GO:0009615: response to virus	1.89E-02
138	GO:0006974: cellular response to DNA damage stimulus	2.04E-02
139	GO:0042128: nitrate assimilation	2.04E-02
140	GO:0006950: response to stress	2.12E-02
141	GO:0030244: cellulose biosynthetic process	2.28E-02
142	GO:0048366: leaf development	2.36E-02
143	GO:0009832: plant-type cell wall biogenesis	2.36E-02
144	GO:0009631: cold acclimation	2.53E-02
145	GO:0010043: response to zinc ion	2.53E-02
146	GO:0042542: response to hydrogen peroxide	3.14E-02
147	GO:0009640: photomorphogenesis	3.23E-02
148	GO:0051707: response to other organism	3.23E-02
149	GO:0008643: carbohydrate transport	3.42E-02
150	GO:0009965: leaf morphogenesis	3.51E-02
151	GO:0006629: lipid metabolic process	3.67E-02
152	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.71E-02
153	GO:0009664: plant-type cell wall organization	3.80E-02
154	GO:0009846: pollen germination	3.80E-02
155	GO:0042538: hyperosmotic salinity response	3.80E-02
156	GO:0042742: defense response to bacterium	3.84E-02
157	GO:0006979: response to oxidative stress	3.88E-02
158	GO:0009585: red, far-red light phototransduction	4.00E-02
159	GO:0009736: cytokinin-activated signaling pathway	4.00E-02
160	GO:0006417: regulation of translation	4.30E-02
161	GO:0009626: plant-type hypersensitive response	4.71E-02
162	GO:0009620: response to fungus	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0003856: 3-dehydroquinate synthase activity	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0004622: lysophospholipase activity	0.00E+00
4	GO:0004764: shikimate 3-dehydrogenase (NADP+) activity	0.00E+00
5	GO:0047763: caffeate O-methyltransferase activity	0.00E+00
6	GO:0030744: luteolin O-methyltransferase activity	0.00E+00
7	GO:0030755: quercetin 3-O-methyltransferase activity	0.00E+00
8	GO:0003846: 2-acylglycerol O-acyltransferase activity	0.00E+00
9	GO:0003855: 3-dehydroquinate dehydratase activity	0.00E+00
10	GO:0033799: myricetin 3'-O-methyltransferase activity	0.00E+00
11	GO:0003963: RNA-3'-phosphate cyclase activity	0.00E+00
12	GO:0004656: procollagen-proline 4-dioxygenase activity	6.00E-05
13	GO:0019784: NEDD8-specific protease activity	1.48E-04
14	GO:0008746: NAD(P)+ transhydrogenase activity	1.48E-04
15	GO:0017096: acetylserotonin O-methyltransferase activity	1.48E-04
16	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.48E-04
17	GO:0090353: polygalacturonase inhibitor activity	1.48E-04
18	GO:0050577: GDP-L-fucose synthase activity	1.48E-04
19	GO:0090430: caffeoyl-CoA: alcohol caffeoyl transferase activity	1.48E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	1.48E-04
21	GO:0032934: sterol binding	3.38E-04
22	GO:0052691: UDP-arabinopyranose mutase activity	3.38E-04
23	GO:0003849: 3-deoxy-7-phosphoheptulonate synthase activity	3.38E-04
24	GO:0042937: tripeptide transporter activity	3.38E-04
25	GO:0052640: salicylic acid glucosyltransferase (glucoside-forming) activity	3.38E-04
26	GO:0046537: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity	3.38E-04
27	GO:0031072: heat shock protein binding	3.47E-04
28	GO:0019829: cation-transporting ATPase activity	5.54E-04
29	GO:0042409: caffeoyl-CoA O-methyltransferase activity	5.54E-04
30	GO:0008964: phosphoenolpyruvate carboxylase activity	5.54E-04
31	GO:0003979: UDP-glucose 6-dehydrogenase activity	5.54E-04
32	GO:0004478: methionine adenosyltransferase activity	5.54E-04
33	GO:0003878: ATP citrate synthase activity	7.93E-04
34	GO:0080044: quercetin 7-O-glucosyltransferase activity	9.24E-04
35	GO:0080043: quercetin 3-O-glucosyltransferase activity	9.24E-04
36	GO:0046527: glucosyltransferase activity	1.05E-03
37	GO:0016866: intramolecular transferase activity	1.05E-03
38	GO:0004930: G-protein coupled receptor activity	1.05E-03
39	GO:0042936: dipeptide transporter activity	1.05E-03
40	GO:0008026: ATP-dependent helicase activity	1.11E-03
41	GO:0005471: ATP:ADP antiporter activity	1.33E-03
42	GO:0003729: mRNA binding	1.51E-03
43	GO:0016615: malate dehydrogenase activity	1.63E-03
44	GO:0048040: UDP-glucuronate decarboxylase activity	1.63E-03
45	GO:0016818: hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.96E-03
46	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.96E-03
47	GO:0004012: phospholipid-translocating ATPase activity	1.96E-03
48	GO:0030060: L-malate dehydrogenase activity	1.96E-03
49	GO:0005242: inward rectifier potassium channel activity	1.96E-03
50	GO:0070403: NAD+ binding	1.96E-03
51	GO:0005524: ATP binding	2.08E-03
52	GO:0004004: ATP-dependent RNA helicase activity	2.17E-03
53	GO:0102425: myricetin 3-O-glucosyltransferase activity	2.30E-03
54	GO:0102360: daphnetin 3-O-glucosyltransferase activity	2.30E-03
55	GO:0030515: snoRNA binding	2.30E-03
56	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.30E-03
57	GO:0008194: UDP-glycosyltransferase activity	2.36E-03
58	GO:0003743: translation initiation factor activity	2.49E-03
59	GO:0047893: flavonol 3-O-glucosyltransferase activity	2.66E-03
60	GO:0004564: beta-fructofuranosidase activity	2.66E-03
61	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.03E-03
62	GO:0008142: oxysterol binding	3.04E-03
63	GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism	3.44E-03
64	GO:0000287: magnesium ion binding	3.48E-03
65	GO:0004575: sucrose alpha-glucosidase activity	3.86E-03
66	GO:0030955: potassium ion binding	3.86E-03
67	GO:0016844: strictosidine synthase activity	3.86E-03
68	GO:0015112: nitrate transmembrane transporter activity	3.86E-03
69	GO:0004743: pyruvate kinase activity	3.86E-03
70	GO:0004713: protein tyrosine kinase activity	4.29E-03
71	GO:0004568: chitinase activity	4.29E-03
72	GO:0008171: O-methyltransferase activity	4.29E-03
73	GO:0015198: oligopeptide transporter activity	5.20E-03
74	GO:0003723: RNA binding	5.54E-03
75	GO:0005388: calcium-transporting ATPase activity	5.68E-03
76	GO:0003725: double-stranded RNA binding	5.68E-03
77	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	5.68E-03
78	GO:0004022: alcohol dehydrogenase (NAD) activity	5.68E-03
79	GO:0005515: protein binding	6.48E-03
80	GO:0051082: unfolded protein binding	7.46E-03
81	GO:0051536: iron-sulfur cluster binding	7.74E-03
82	GO:0031418: L-ascorbic acid binding	7.74E-03
83	GO:0043130: ubiquitin binding	7.74E-03
84	GO:0004386: helicase activity	8.15E-03
85	GO:0035251: UDP-glucosyltransferase activity	8.85E-03
86	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.85E-03
87	GO:0016760: cellulose synthase (UDP-forming) activity	1.00E-02
88	GO:0030551: cyclic nucleotide binding	1.19E-02
89	GO:0005249: voltage-gated potassium channel activity	1.19E-02
90	GO:0003713: transcription coactivator activity	1.25E-02
91	GO:0050662: coenzyme binding	1.32E-02
92	GO:0016853: isomerase activity	1.32E-02
93	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.45E-02
94	GO:0004518: nuclease activity	1.52E-02
95	GO:0000166: nucleotide binding	1.59E-02
96	GO:0016413: O-acetyltransferase activity	1.81E-02
97	GO:0004601: peroxidase activity	2.01E-02
98	GO:0005096: GTPase activator activity	2.36E-02
99	GO:0030145: manganese ion binding	2.53E-02
100	GO:0003697: single-stranded DNA binding	2.70E-02
101	GO:0042393: histone binding	2.96E-02
102	GO:0051539: 4 iron, 4 sulfur cluster binding	2.96E-02
103	GO:0050661: NADP binding	2.96E-02
104	GO:0016787: hydrolase activity	3.29E-02
105	GO:0051287: NAD binding	3.71E-02
106	GO:0003690: double-stranded DNA binding	4.10E-02
107	GO:0016298: lipase activity	4.10E-02
108	GO:0004674: protein serine/threonine kinase activity	4.22E-02
109	GO:0031625: ubiquitin protein ligase binding	4.30E-02
110	GO:0045330: aspartyl esterase activity	4.30E-02
111	GO:0003824: catalytic activity	4.30E-02
112	GO:0046872: metal ion binding	4.32E-02
113	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	4.61E-02
114	GO:0030599: pectinesterase activity	4.92E-02
115	GO:0022857: transmembrane transporter activity	4.92E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0005829: cytosol	5.45E-09
3	GO:0005618: cell wall	5.20E-08
4	GO:0005730: nucleolus	3.04E-06
5	GO:0009506: plasmodesma	9.92E-06
6	GO:0005886: plasma membrane	1.26E-05
7	GO:0005794: Golgi apparatus	4.78E-05
8	GO:0045252: oxoglutarate dehydrogenase complex	1.48E-04
9	GO:0016442: RISC complex	1.48E-04
10	GO:0000138: Golgi trans cisterna	1.48E-04
11	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	1.48E-04
12	GO:0005740: mitochondrial envelope	2.27E-04
13	GO:0070545: PeBoW complex	3.38E-04
14	GO:0005737: cytoplasm	4.68E-04
15	GO:0030130: clathrin coat of trans-Golgi network vesicle	5.54E-04
16	GO:0030132: clathrin coat of coated pit	5.54E-04
17	GO:0009346: citrate lyase complex	7.93E-04
18	GO:0005783: endoplasmic reticulum	1.51E-03
19	GO:0008180: COP9 signalosome	3.44E-03
20	GO:0010494: cytoplasmic stress granule	3.44E-03
21	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	4.00E-03
22	GO:0048471: perinuclear region of cytoplasm	4.73E-03
23	GO:0031307: integral component of mitochondrial outer membrane	5.20E-03
24	GO:0032040: small-subunit processome	5.20E-03
25	GO:0010008: endosome membrane	6.40E-03
26	GO:0030176: integral component of endoplasmic reticulum membrane	6.67E-03
27	GO:0005795: Golgi stack	6.67E-03
28	GO:0043234: protein complex	7.20E-03
29	GO:0016020: membrane	7.41E-03
30	GO:0005802: trans-Golgi network	7.42E-03
31	GO:0005774: vacuolar membrane	7.95E-03
32	GO:0043231: intracellular membrane-bounded organelle	8.68E-03
33	GO:0009532: plastid stroma	8.85E-03
34	GO:0005741: mitochondrial outer membrane	8.85E-03
35	GO:0005768: endosome	9.01E-03
36	GO:0005654: nucleoplasm	9.10E-03
37	GO:0030136: clathrin-coated vesicle	1.13E-02
38	GO:0005770: late endosome	1.25E-02
39	GO:0031965: nuclear membrane	1.39E-02
40	GO:0009536: plastid	1.44E-02
41	GO:0071944: cell periphery	1.59E-02
42	GO:0000139: Golgi membrane	1.67E-02
43	GO:0010319: stromule	1.74E-02
44	GO:0030529: intracellular ribonucleoprotein complex	1.89E-02
45	GO:0000932: P-body	1.89E-02
46	GO:0005789: endoplasmic reticulum membrane	2.00E-02
47	GO:0019005: SCF ubiquitin ligase complex	2.28E-02
48	GO:0015934: large ribosomal subunit	2.53E-02
49	GO:0048046: apoplast	2.56E-02
50	GO:0022625: cytosolic large ribosomal subunit	2.62E-02
51	GO:0031902: late endosome membrane	3.05E-02
52	GO:0005635: nuclear envelope	4.20E-02
53	GO:0005681: spliceosomal complex	4.50E-02
54	GO:0005834: heterotrimeric G-protein complex	4.71E-02
55	GO:0005887: integral component of plasma membrane	4.96E-02