co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G48110

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
2	GO:2000636: positive regulation of primary miRNA processing	0.00E+00
3	GO:0010046: response to mycotoxin	0.00E+00
4	GO:0035420: MAPK cascade involved in innate immune response	0.00E+00
5	GO:0009560: embryo sac egg cell differentiation	0.00E+00
6	GO:0010245: radial microtubular system formation	0.00E+00
7	GO:0034263: positive regulation of autophagy in response to ER overload	0.00E+00
8	GO:2000630: positive regulation of miRNA metabolic process	0.00E+00
9	GO:0090306: spindle assembly involved in meiosis	0.00E+00
10	GO:0090352: regulation of nitrate assimilation	0.00E+00
11	GO:0043487: regulation of RNA stability	0.00E+00
12	GO:0042353: fucose biosynthetic process	0.00E+00
13	GO:0007141: male meiosis I	0.00E+00
14	GO:0010247: detection of phosphate ion	0.00E+00
15	GO:2000070: regulation of response to water deprivation	1.18E-06
16	GO:0070588: calcium ion transmembrane transport	1.42E-05
17	GO:0010337: regulation of salicylic acid metabolic process	3.90E-05
18	GO:1900150: regulation of defense response to fungus	9.51E-05
19	GO:0046777: protein autophosphorylation	1.28E-04
20	GO:0034628: 'de novo' NAD biosynthetic process from aspartate	1.40E-04
21	GO:0015853: adenine transport	1.40E-04
22	GO:0099132: ATP hydrolysis coupled cation transmembrane transport	1.40E-04
23	GO:0015854: guanine transport	1.40E-04
24	GO:0010113: negative regulation of systemic acquired resistance	1.40E-04
25	GO:0006562: proline catabolic process	1.40E-04
26	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.47E-04
27	GO:0009408: response to heat	2.44E-04
28	GO:2000071: regulation of defense response by callose deposition	3.20E-04
29	GO:0046740: transport of virus in host, cell to cell	3.20E-04
30	GO:0010155: regulation of proton transport	3.20E-04
31	GO:0010133: proline catabolic process to glutamate	3.20E-04
32	GO:0006611: protein export from nucleus	3.20E-04
33	GO:0010372: positive regulation of gibberellin biosynthetic process	3.20E-04
34	GO:0043255: regulation of carbohydrate biosynthetic process	3.20E-04
35	GO:2000030: regulation of response to red or far red light	3.20E-04
36	GO:0009873: ethylene-activated signaling pathway	3.94E-04
37	GO:0009863: salicylic acid mediated signaling pathway	5.03E-04
38	GO:0051176: positive regulation of sulfur metabolic process	5.26E-04
39	GO:0000055: ribosomal large subunit export from nucleus	5.26E-04
40	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	5.26E-04
41	GO:0034427: nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	5.26E-04
42	GO:0080168: abscisic acid transport	5.26E-04
43	GO:0006468: protein phosphorylation	5.53E-04
44	GO:0009558: embryo sac cellularization	7.53E-04
45	GO:0006986: response to unfolded protein	7.53E-04
46	GO:0007004: telomere maintenance via telomerase	7.53E-04
47	GO:0010071: root meristem specification	7.53E-04
48	GO:1901000: regulation of response to salt stress	7.53E-04
49	GO:0006537: glutamate biosynthetic process	7.53E-04
50	GO:0030100: regulation of endocytosis	7.53E-04
51	GO:0015696: ammonium transport	7.53E-04
52	GO:0071323: cellular response to chitin	7.53E-04
53	GO:0009694: jasmonic acid metabolic process	9.98E-04
54	GO:0015743: malate transport	9.98E-04
55	GO:0033320: UDP-D-xylose biosynthetic process	9.98E-04
56	GO:0010483: pollen tube reception	9.98E-04
57	GO:0072488: ammonium transmembrane transport	9.98E-04
58	GO:0006536: glutamate metabolic process	9.98E-04
59	GO:0001709: cell fate determination	9.98E-04
60	GO:0007112: male meiosis cytokinesis	9.98E-04
61	GO:0009742: brassinosteroid mediated signaling pathway	1.01E-03
62	GO:0006457: protein folding	1.09E-03
63	GO:0045038: protein import into chloroplast thylakoid membrane	1.26E-03
64	GO:0007029: endoplasmic reticulum organization	1.26E-03
65	GO:0009435: NAD biosynthetic process	1.26E-03
66	GO:0030308: negative regulation of cell growth	1.26E-03
67	GO:0030041: actin filament polymerization	1.26E-03
68	GO:0046686: response to cadmium ion	1.41E-03
69	GO:0010286: heat acclimation	1.53E-03
70	GO:0006904: vesicle docking involved in exocytosis	1.53E-03
71	GO:0016070: RNA metabolic process	1.55E-03
72	GO:0010256: endomembrane system organization	1.55E-03
73	GO:0048232: male gamete generation	1.55E-03
74	GO:0042732: D-xylose metabolic process	1.55E-03
75	GO:0048317: seed morphogenesis	1.55E-03
76	GO:0006796: phosphate-containing compound metabolic process	1.55E-03
77	GO:0009615: response to virus	1.71E-03
78	GO:0009816: defense response to bacterium, incompatible interaction	1.81E-03
79	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	1.86E-03
80	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.18E-03
81	GO:0006401: RNA catabolic process	2.18E-03
82	GO:0006955: immune response	2.18E-03
83	GO:0007205: protein kinase C-activating G-protein coupled receptor signaling pathway	2.18E-03
84	GO:0009834: plant-type secondary cell wall biogenesis	2.45E-03
85	GO:0010078: maintenance of root meristem identity	2.52E-03
86	GO:0045010: actin nucleation	2.52E-03
87	GO:0010492: maintenance of shoot apical meristem identity	2.52E-03
88	GO:0006402: mRNA catabolic process	2.52E-03
89	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.52E-03
90	GO:0030968: endoplasmic reticulum unfolded protein response	2.88E-03
91	GO:0010208: pollen wall assembly	2.88E-03
92	GO:0060321: acceptance of pollen	2.88E-03
93	GO:0048589: developmental growth	3.26E-03
94	GO:0009060: aerobic respiration	3.26E-03
95	GO:0007338: single fertilization	3.26E-03
96	GO:0046685: response to arsenic-containing substance	3.26E-03
97	GO:0006887: exocytosis	3.33E-03
98	GO:0008202: steroid metabolic process	3.65E-03
99	GO:0000387: spliceosomal snRNP assembly	3.65E-03
100	GO:0090332: stomatal closure	3.65E-03
101	GO:0051026: chiasma assembly	4.06E-03
102	GO:0009870: defense response signaling pathway, resistance gene-dependent	4.06E-03
103	GO:0048229: gametophyte development	4.48E-03
104	GO:0010015: root morphogenesis	4.48E-03
105	GO:0010105: negative regulation of ethylene-activated signaling pathway	4.92E-03
106	GO:0016925: protein sumoylation	4.92E-03
107	GO:0071365: cellular response to auxin stimulus	4.92E-03
108	GO:0050826: response to freezing	5.37E-03
109	GO:0034605: cellular response to heat	5.84E-03
110	GO:0009626: plant-type hypersensitive response	6.11E-03
111	GO:0046854: phosphatidylinositol phosphorylation	6.32E-03
112	GO:0009969: xyloglucan biosynthetic process	6.32E-03
113	GO:0009225: nucleotide-sugar metabolic process	6.32E-03
114	GO:0080188: RNA-directed DNA methylation	6.32E-03
115	GO:0009553: embryo sac development	6.69E-03
116	GO:0006863: purine nucleobase transport	6.81E-03
117	GO:0009833: plant-type primary cell wall biogenesis	6.81E-03
118	GO:0009624: response to nematode	6.89E-03
119	GO:0010187: negative regulation of seed germination	7.32E-03
120	GO:0006406: mRNA export from nucleus	7.32E-03
121	GO:2000377: regulation of reactive oxygen species metabolic process	7.32E-03
122	GO:0048364: root development	7.32E-03
123	GO:0000398: mRNA splicing, via spliceosome	7.96E-03
124	GO:0098542: defense response to other organism	8.38E-03
125	GO:0061077: chaperone-mediated protein folding	8.38E-03
126	GO:0031348: negative regulation of defense response	8.92E-03
127	GO:0016226: iron-sulfur cluster assembly	8.92E-03
128	GO:0007131: reciprocal meiotic recombination	8.92E-03
129	GO:0030433: ubiquitin-dependent ERAD pathway	8.92E-03
130	GO:0009845: seed germination	9.35E-03
131	GO:0042742: defense response to bacterium	9.37E-03
132	GO:0009686: gibberellin biosynthetic process	9.48E-03
133	GO:0009306: protein secretion	1.01E-02
134	GO:0042147: retrograde transport, endosome to Golgi	1.06E-02
135	GO:0080022: primary root development	1.12E-02
136	GO:0010501: RNA secondary structure unwinding	1.12E-02
137	GO:0009741: response to brassinosteroid	1.18E-02
138	GO:0009960: endosperm development	1.18E-02
139	GO:0007018: microtubule-based movement	1.25E-02
140	GO:0048544: recognition of pollen	1.25E-02
141	GO:0009791: post-embryonic development	1.31E-02
142	GO:0010183: pollen tube guidance	1.31E-02
143	GO:0010193: response to ozone	1.37E-02
144	GO:0031047: gene silencing by RNA	1.44E-02
145	GO:0009555: pollen development	1.44E-02
146	GO:0009409: response to cold	1.48E-02
147	GO:1901657: glycosyl compound metabolic process	1.51E-02
148	GO:0006914: autophagy	1.58E-02
149	GO:0006310: DNA recombination	1.58E-02
150	GO:0007267: cell-cell signaling	1.64E-02
151	GO:0016579: protein deubiquitination	1.71E-02
152	GO:0000910: cytokinesis	1.71E-02
153	GO:0001666: response to hypoxia	1.79E-02
154	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.86E-02
155	GO:0009627: systemic acquired resistance	1.93E-02
156	GO:0048573: photoperiodism, flowering	2.00E-02
157	GO:0016049: cell growth	2.08E-02
158	GO:0006511: ubiquitin-dependent protein catabolic process	2.12E-02
159	GO:0009723: response to ethylene	2.14E-02
160	GO:0008219: cell death	2.16E-02
161	GO:0048481: plant ovule development	2.16E-02
162	GO:0030244: cellulose biosynthetic process	2.16E-02
163	GO:0048366: leaf development	2.18E-02
164	GO:0006499: N-terminal protein myristoylation	2.31E-02
165	GO:0010200: response to chitin	2.38E-02
166	GO:0009910: negative regulation of flower development	2.39E-02
167	GO:0010119: regulation of stomatal movement	2.39E-02
168	GO:0009637: response to blue light	2.55E-02
169	GO:0006897: endocytosis	2.88E-02
170	GO:0042542: response to hydrogen peroxide	2.97E-02
171	GO:0009640: photomorphogenesis	3.06E-02
172	GO:0008283: cell proliferation	3.06E-02
173	GO:0009644: response to high light intensity	3.23E-02
174	GO:0006855: drug transmembrane transport	3.41E-02
175	GO:0031347: regulation of defense response	3.50E-02
176	GO:0006260: DNA replication	3.50E-02
177	GO:0006397: mRNA processing	3.54E-02
178	GO:0016310: phosphorylation	3.56E-02
179	GO:0009846: pollen germination	3.59E-02
180	GO:0009809: lignin biosynthetic process	3.78E-02
181	GO:0006364: rRNA processing	3.78E-02
182	GO:0009585: red, far-red light phototransduction	3.78E-02
183	GO:0010224: response to UV-B	3.87E-02
184	GO:0048367: shoot system development	4.35E-02
185	GO:0009620: response to fungus	4.55E-02
186	GO:0016569: covalent chromatin modification	4.65E-02
187	GO:0042545: cell wall modification	4.75E-02
188	GO:0006396: RNA processing	4.95E-02
189	GO:0018105: peptidyl-serine phosphorylation	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0030621: U4 snRNA binding	0.00E+00
2	GO:0080123: jasmonate-amino synthetase activity	0.00E+00
3	GO:0032442: phenylcoumaran benzylic ether reductase activity	0.00E+00
4	GO:0010857: calcium-dependent protein kinase activity	0.00E+00
5	GO:0070566: adenylyltransferase activity	0.00E+00
6	GO:0008987: quinolinate synthetase A activity	0.00E+00
7	GO:0005524: ATP binding	7.32E-08
8	GO:0005388: calcium-transporting ATPase activity	9.42E-06
9	GO:0002020: protease binding	2.60E-05
10	GO:0017070: U6 snRNA binding	2.60E-05
11	GO:0004540: ribonuclease activity	2.82E-05
12	GO:0004674: protein serine/threonine kinase activity	3.12E-05
13	GO:0016301: kinase activity	8.45E-05
14	GO:0090440: abscisic acid transporter activity	1.40E-04
15	GO:0017151: DEAD/H-box RNA helicase binding	1.40E-04
16	GO:0015085: calcium ion transmembrane transporter activity	1.40E-04
17	GO:0004657: proline dehydrogenase activity	1.40E-04
18	GO:0015398: high-affinity secondary active ammonium transmembrane transporter activity	1.40E-04
19	GO:0030544: Hsp70 protein binding	1.40E-04
20	GO:0005516: calmodulin binding	3.19E-04
21	GO:0043021: ribonucleoprotein complex binding	3.20E-04
22	GO:0070034: telomerase RNA binding	3.20E-04
23	GO:0036002: pre-mRNA binding	3.20E-04
24	GO:0005515: protein binding	5.59E-04
25	GO:0043023: ribosomal large subunit binding	7.53E-04
26	GO:0004351: glutamate decarboxylase activity	7.53E-04
27	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	7.53E-04
28	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	7.53E-04
29	GO:0019789: SUMO transferase activity	7.53E-04
30	GO:0005253: anion channel activity	9.98E-04
31	GO:0004672: protein kinase activity	1.25E-03
32	GO:0009922: fatty acid elongase activity	1.26E-03
33	GO:0008519: ammonium transmembrane transporter activity	1.55E-03
34	GO:0048040: UDP-glucuronate decarboxylase activity	1.55E-03
35	GO:0004709: MAP kinase kinase kinase activity	1.55E-03
36	GO:0016462: pyrophosphatase activity	1.55E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.86E-03
38	GO:0070403: NAD+ binding	1.86E-03
39	GO:0004143: diacylglycerol kinase activity	2.18E-03
40	GO:0042162: telomeric DNA binding	2.18E-03
41	GO:0004427: inorganic diphosphatase activity	2.18E-03
42	GO:0015140: malate transmembrane transporter activity	2.18E-03
43	GO:0019899: enzyme binding	2.18E-03
44	GO:0008142: oxysterol binding	2.88E-03
45	GO:0003951: NAD+ kinase activity	2.88E-03
46	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.06E-03
47	GO:0008047: enzyme activator activity	4.06E-03
48	GO:0004521: endoribonuclease activity	4.92E-03
49	GO:0019888: protein phosphatase regulator activity	5.37E-03
50	GO:0000175: 3'-5'-exoribonuclease activity	5.37E-03
51	GO:0031625: ubiquitin protein ligase binding	5.37E-03
52	GO:0003779: actin binding	6.69E-03
53	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	6.81E-03
54	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	6.81E-03
55	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	6.81E-03
56	GO:0005345: purine nucleobase transmembrane transporter activity	7.84E-03
57	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	8.38E-03
58	GO:0016760: cellulose synthase (UDP-forming) activity	9.48E-03
59	GO:0008536: Ran GTPase binding	1.18E-02
60	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.37E-02
61	GO:0004518: nuclease activity	1.44E-02
62	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.52E-02
63	GO:0016759: cellulose synthase activity	1.58E-02
64	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.64E-02
65	GO:0046872: metal ion binding	1.71E-02
66	GO:0003729: mRNA binding	1.71E-02
67	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.93E-02
68	GO:0004683: calmodulin-dependent protein kinase activity	2.00E-02
69	GO:0102483: scopolin beta-glucosidase activity	2.00E-02
70	GO:0004004: ATP-dependent RNA helicase activity	2.00E-02
71	GO:0030246: carbohydrate binding	2.09E-02
72	GO:0015238: drug transmembrane transporter activity	2.23E-02
73	GO:0008422: beta-glucosidase activity	2.72E-02
74	GO:0051539: 4 iron, 4 sulfur cluster binding	2.80E-02
75	GO:0042803: protein homodimerization activity	2.88E-02
76	GO:0005509: calcium ion binding	3.15E-02
77	GO:0035091: phosphatidylinositol binding	3.23E-02
78	GO:0003824: catalytic activity	3.90E-02
79	GO:0045330: aspartyl esterase activity	4.06E-02
80	GO:0003777: microtubule motor activity	4.06E-02
81	GO:0016874: ligase activity	4.65E-02
82	GO:0030599: pectinesterase activity	4.65E-02
83	GO:0022857: transmembrane transporter activity	4.65E-02
84	GO:0051082: unfolded protein binding	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0043680: filiform apparatus	0.00E+00
2	GO:0045335: phagocytic vesicle	0.00E+00
3	GO:0005886: plasma membrane	2.76E-09
4	GO:0000145: exocyst	9.50E-05
5	GO:0009506: plasmodesma	1.06E-04
6	GO:0016442: RISC complex	1.40E-04
7	GO:0000932: P-body	1.48E-04
8	GO:0080085: signal recognition particle, chloroplast targeting	3.20E-04
9	GO:0071007: U2-type catalytic step 2 spliceosome	3.20E-04
10	GO:0005697: telomerase holoenzyme complex	3.20E-04
11	GO:0017053: transcriptional repressor complex	5.26E-04
12	GO:0071006: U2-type catalytic step 1 spliceosome	7.53E-04
13	GO:0070062: extracellular exosome	7.53E-04
14	GO:0000178: exosome (RNase complex)	1.26E-03
15	GO:0032580: Golgi cisterna membrane	1.44E-03
16	GO:0000974: Prp19 complex	1.55E-03
17	GO:0030173: integral component of Golgi membrane	1.86E-03
18	GO:0016363: nuclear matrix	1.86E-03
19	GO:0046540: U4/U6 x U5 tri-snRNP complex	2.88E-03
20	GO:0010494: cytoplasmic stress granule	3.26E-03
21	GO:0015030: Cajal body	3.65E-03
22	GO:0000159: protein phosphatase type 2A complex	4.48E-03
23	GO:0048471: perinuclear region of cytoplasm	4.48E-03
24	GO:0019013: viral nucleocapsid	5.37E-03
25	GO:0005681: spliceosomal complex	5.73E-03
26	GO:0016607: nuclear speck	5.92E-03
27	GO:0005875: microtubule associated complex	6.81E-03
28	GO:0005768: endosome	7.98E-03
29	GO:0009524: phragmoplast	9.11E-03
30	GO:0005887: integral component of plasma membrane	1.02E-02
31	GO:0000790: nuclear chromatin	1.06E-02
32	GO:0005871: kinesin complex	1.06E-02
33	GO:0005770: late endosome	1.18E-02
34	GO:0005778: peroxisomal membrane	1.64E-02
35	GO:0005788: endoplasmic reticulum lumen	1.86E-02
36	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.03E-02
37	GO:0005730: nucleolus	2.06E-02
38	GO:0019005: SCF ubiquitin ligase complex	2.16E-02
39	GO:0005643: nuclear pore	2.16E-02
40	GO:0016021: integral component of membrane	2.32E-02
41	GO:0016020: membrane	2.38E-02
42	GO:0005618: cell wall	2.59E-02
43	GO:0005802: trans-Golgi network	2.60E-02
44	GO:0031902: late endosome membrane	2.88E-02
45	GO:0005737: cytoplasm	2.89E-02
46	GO:0005829: cytosol	3.13E-02
47	GO:0043231: intracellular membrane-bounded organelle	3.74E-02
48	GO:0005635: nuclear envelope	3.97E-02
49	GO:0010008: endosome membrane	4.35E-02