co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G47820

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009106: lipoate metabolic process	0.00E+00
2	GO:0071000: response to magnetism	0.00E+00
3	GO:0046460: neutral lipid biosynthetic process	0.00E+00
4	GO:0032928: regulation of superoxide anion generation	0.00E+00
5	GO:0018316: peptide cross-linking via L-cystine	0.00E+00
6	GO:0009249: protein lipoylation	0.00E+00
7	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
8	GO:0009583: detection of light stimulus	0.00E+00
9	GO:0046294: formaldehyde catabolic process	0.00E+00
10	GO:0009098: leucine biosynthetic process	9.86E-06
11	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	1.87E-05
12	GO:0090307: mitotic spindle assembly	1.87E-05
13	GO:0010117: photoprotection	5.47E-05
14	GO:0010190: cytochrome b6f complex assembly	8.04E-05
15	GO:0051418: microtubule nucleation by microtubule organizing center	2.18E-04
16	GO:0071806: protein transmembrane transport	2.18E-04
17	GO:0034971: histone H3-R17 methylation	2.18E-04
18	GO:0072387: flavin adenine dinucleotide metabolic process	2.18E-04
19	GO:0071454: cellular response to anoxia	2.18E-04
20	GO:0043686: co-translational protein modification	2.18E-04
21	GO:0071461: cellular response to redox state	2.18E-04
22	GO:0034080: CENP-A containing nucleosome assembly	2.18E-04
23	GO:0034970: histone H3-R2 methylation	2.18E-04
24	GO:0034972: histone H3-R26 methylation	2.18E-04
25	GO:1900426: positive regulation of defense response to bacterium	3.36E-04
26	GO:0080005: photosystem stoichiometry adjustment	4.86E-04
27	GO:0010617: circadian regulation of calcium ion oscillation	4.86E-04
28	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.86E-04
29	GO:0099402: plant organ development	4.86E-04
30	GO:0016122: xanthophyll metabolic process	4.86E-04
31	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.86E-04
32	GO:0080153: negative regulation of reductive pentose-phosphate cycle	4.86E-04
33	GO:0080185: effector dependent induction by symbiont of host immune response	4.86E-04
34	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.86E-04
35	GO:0010343: singlet oxygen-mediated programmed cell death	4.86E-04
36	GO:1901529: positive regulation of anion channel activity	4.86E-04
37	GO:0033566: gamma-tubulin complex localization	4.86E-04
38	GO:1901672: positive regulation of systemic acquired resistance	7.90E-04
39	GO:0009150: purine ribonucleotide metabolic process	7.90E-04
40	GO:0071492: cellular response to UV-A	7.90E-04
41	GO:0007052: mitotic spindle organization	7.90E-04
42	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.90E-04
43	GO:1902448: positive regulation of shade avoidance	7.90E-04
44	GO:0007017: microtubule-based process	1.01E-03
45	GO:0033014: tetrapyrrole biosynthetic process	1.13E-03
46	GO:1901332: negative regulation of lateral root development	1.13E-03
47	GO:0006882: cellular zinc ion homeostasis	1.13E-03
48	GO:2001141: regulation of RNA biosynthetic process	1.13E-03
49	GO:0034508: centromere complex assembly	1.13E-03
50	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.13E-03
51	GO:0009658: chloroplast organization	1.39E-03
52	GO:0031122: cytoplasmic microtubule organization	1.50E-03
53	GO:1902347: response to strigolactone	1.50E-03
54	GO:0034613: cellular protein localization	1.50E-03
55	GO:1900864: mitochondrial RNA modification	1.50E-03
56	GO:0071486: cellular response to high light intensity	1.50E-03
57	GO:0042274: ribosomal small subunit biogenesis	1.50E-03
58	GO:0031935: regulation of chromatin silencing	1.50E-03
59	GO:0009765: photosynthesis, light harvesting	1.50E-03
60	GO:0046283: anthocyanin-containing compound metabolic process	1.91E-03
61	GO:0000278: mitotic cell cycle	1.91E-03
62	GO:0031365: N-terminal protein amino acid modification	1.91E-03
63	GO:0035434: copper ion transmembrane transport	1.91E-03
64	GO:0009107: lipoate biosynthetic process	1.91E-03
65	GO:0016123: xanthophyll biosynthetic process	1.91E-03
66	GO:0060918: auxin transport	2.35E-03
67	GO:0019761: glucosinolate biosynthetic process	2.35E-03
68	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.35E-03
69	GO:0016070: RNA metabolic process	2.35E-03
70	GO:0006555: methionine metabolic process	2.35E-03
71	GO:0031053: primary miRNA processing	2.35E-03
72	GO:1901371: regulation of leaf morphogenesis	2.35E-03
73	GO:0034389: lipid particle organization	2.83E-03
74	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	2.83E-03
75	GO:0017148: negative regulation of translation	2.83E-03
76	GO:0010019: chloroplast-nucleus signaling pathway	2.83E-03
77	GO:0010310: regulation of hydrogen peroxide metabolic process	2.83E-03
78	GO:0019509: L-methionine salvage from methylthioadenosine	2.83E-03
79	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.83E-03
80	GO:0030026: cellular manganese ion homeostasis	3.33E-03
81	GO:0051510: regulation of unidimensional cell growth	3.33E-03
82	GO:0010038: response to metal ion	3.33E-03
83	GO:1900056: negative regulation of leaf senescence	3.33E-03
84	GO:0080111: DNA demethylation	3.33E-03
85	GO:0042255: ribosome assembly	3.86E-03
86	GO:0006353: DNA-templated transcription, termination	3.86E-03
87	GO:0006605: protein targeting	3.86E-03
88	GO:0009704: de-etiolation	3.86E-03
89	GO:0000105: histidine biosynthetic process	3.86E-03
90	GO:0048564: photosystem I assembly	3.86E-03
91	GO:0045292: mRNA cis splicing, via spliceosome	3.86E-03
92	GO:0010928: regulation of auxin mediated signaling pathway	3.86E-03
93	GO:0032544: plastid translation	4.42E-03
94	GO:0071482: cellular response to light stimulus	4.42E-03
95	GO:0022900: electron transport chain	4.42E-03
96	GO:0019430: removal of superoxide radicals	4.42E-03
97	GO:0046916: cellular transition metal ion homeostasis	5.00E-03
98	GO:0006783: heme biosynthetic process	5.00E-03
99	GO:0019432: triglyceride biosynthetic process	5.00E-03
100	GO:0009821: alkaloid biosynthetic process	5.00E-03
101	GO:0007346: regulation of mitotic cell cycle	5.62E-03
102	GO:0009638: phototropism	5.62E-03
103	GO:0006779: porphyrin-containing compound biosynthetic process	5.62E-03
104	GO:1900865: chloroplast RNA modification	5.62E-03
105	GO:0010380: regulation of chlorophyll biosynthetic process	5.62E-03
106	GO:0009688: abscisic acid biosynthetic process	6.25E-03
107	GO:0055062: phosphate ion homeostasis	6.25E-03
108	GO:0009744: response to sucrose	6.73E-03
109	GO:0043085: positive regulation of catalytic activity	6.91E-03
110	GO:0006352: DNA-templated transcription, initiation	6.91E-03
111	GO:0006816: calcium ion transport	6.91E-03
112	GO:0045037: protein import into chloroplast stroma	7.60E-03
113	GO:0006790: sulfur compound metabolic process	7.60E-03
114	GO:0009785: blue light signaling pathway	8.30E-03
115	GO:0010075: regulation of meristem growth	8.30E-03
116	GO:0009725: response to hormone	8.30E-03
117	GO:0009767: photosynthetic electron transport chain	8.30E-03
118	GO:0010207: photosystem II assembly	9.03E-03
119	GO:0019253: reductive pentose-phosphate cycle	9.03E-03
120	GO:0034605: cellular response to heat	9.03E-03
121	GO:0090351: seedling development	9.79E-03
122	GO:0042023: DNA endoreduplication	1.06E-02
123	GO:0006071: glycerol metabolic process	1.06E-02
124	GO:0000162: tryptophan biosynthetic process	1.06E-02
125	GO:0006289: nucleotide-excision repair	1.14E-02
126	GO:2000377: regulation of reactive oxygen species metabolic process	1.14E-02
127	GO:0006825: copper ion transport	1.22E-02
128	GO:0016226: iron-sulfur cluster assembly	1.39E-02
129	GO:0006810: transport	1.40E-02
130	GO:0055114: oxidation-reduction process	1.58E-02
131	GO:0070417: cellular response to cold	1.66E-02
132	GO:0008033: tRNA processing	1.75E-02
133	GO:0010118: stomatal movement	1.75E-02
134	GO:0000226: microtubule cytoskeleton organization	1.75E-02
135	GO:0009958: positive gravitropism	1.85E-02
136	GO:0010197: polar nucleus fusion	1.85E-02
137	GO:0042752: regulation of circadian rhythm	1.95E-02
138	GO:0009646: response to absence of light	1.95E-02
139	GO:0009851: auxin biosynthetic process	2.05E-02
140	GO:0080156: mitochondrial mRNA modification	2.15E-02
141	GO:0032502: developmental process	2.25E-02
142	GO:0007264: small GTPase mediated signal transduction	2.25E-02
143	GO:0030163: protein catabolic process	2.36E-02
144	GO:0016126: sterol biosynthetic process	2.79E-02
145	GO:0015995: chlorophyll biosynthetic process	3.14E-02
146	GO:0018298: protein-chromophore linkage	3.37E-02
147	GO:0042254: ribosome biogenesis	3.54E-02
148	GO:0010218: response to far red light	3.62E-02
149	GO:0009631: cold acclimation	3.74E-02
150	GO:0010043: response to zinc ion	3.74E-02
151	GO:0009910: negative regulation of flower development	3.74E-02
152	GO:0009637: response to blue light	3.99E-02
153	GO:0006099: tricarboxylic acid cycle	4.12E-02
154	GO:0030001: metal ion transport	4.38E-02
155	GO:0009640: photomorphogenesis	4.78E-02
156	GO:0010114: response to red light	4.78E-02
157	GO:0006412: translation	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0018738: S-formylglutathione hydrolase activity	0.00E+00
2	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
3	GO:0003862: 3-isopropylmalate dehydrogenase activity	2.23E-06
4	GO:0004848: ureidoglycolate hydrolase activity	8.14E-06
5	GO:0043015: gamma-tubulin binding	3.41E-05
6	GO:0048038: quinone binding	2.10E-04
7	GO:0004325: ferrochelatase activity	2.18E-04
8	GO:0042586: peptide deformylase activity	2.18E-04
9	GO:0004424: imidazoleglycerol-phosphate dehydratase activity	2.18E-04
10	GO:0046906: tetrapyrrole binding	2.18E-04
11	GO:0033984: indole-3-glycerol-phosphate lyase activity	2.18E-04
12	GO:0015085: calcium ion transmembrane transporter activity	2.18E-04
13	GO:0071949: FAD binding	2.82E-04
14	GO:0004129: cytochrome-c oxidase activity	4.56E-04
15	GO:0004046: aminoacylase activity	4.86E-04
16	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.86E-04
17	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	4.86E-04
18	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.86E-04
19	GO:0017118: lipoyltransferase activity	4.86E-04
20	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.86E-04
21	GO:0016415: octanoyltransferase activity	4.86E-04
22	GO:0003861: 3-isopropylmalate dehydratase activity	7.90E-04
23	GO:0008469: histone-arginine N-methyltransferase activity	7.90E-04
24	GO:0008430: selenium binding	7.90E-04
25	GO:0004180: carboxypeptidase activity	7.90E-04
26	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	7.90E-04
27	GO:0032947: protein complex scaffold	7.90E-04
28	GO:0019003: GDP binding	7.90E-04
29	GO:0016851: magnesium chelatase activity	1.13E-03
30	GO:0000339: RNA cap binding	1.13E-03
31	GO:0009882: blue light photoreceptor activity	1.13E-03
32	GO:0047627: adenylylsulfatase activity	1.13E-03
33	GO:0043023: ribosomal large subunit binding	1.13E-03
34	GO:0000254: C-4 methylsterol oxidase activity	1.13E-03
35	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.50E-03
36	GO:0015368: calcium:cation antiporter activity	1.50E-03
37	GO:0001053: plastid sigma factor activity	1.50E-03
38	GO:0004834: tryptophan synthase activity	1.50E-03
39	GO:0016836: hydro-lyase activity	1.50E-03
40	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.50E-03
41	GO:0015369: calcium:proton antiporter activity	1.50E-03
42	GO:0016987: sigma factor activity	1.50E-03
43	GO:0051011: microtubule minus-end binding	1.91E-03
44	GO:0004784: superoxide dismutase activity	2.35E-03
45	GO:0004144: diacylglycerol O-acyltransferase activity	2.83E-03
46	GO:0015631: tubulin binding	2.83E-03
47	GO:0019899: enzyme binding	3.33E-03
48	GO:0016491: oxidoreductase activity	3.55E-03
49	GO:0005375: copper ion transmembrane transporter activity	4.42E-03
50	GO:0046914: transition metal ion binding	4.42E-03
51	GO:0016844: strictosidine synthase activity	5.62E-03
52	GO:0042393: histone binding	5.95E-03
53	GO:0051287: NAD binding	8.15E-03
54	GO:0031072: heat shock protein binding	8.30E-03
55	GO:0003777: microtubule motor activity	1.01E-02
56	GO:0005515: protein binding	1.05E-02
57	GO:0003887: DNA-directed DNA polymerase activity	1.06E-02
58	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.11E-02
59	GO:0051536: iron-sulfur cluster binding	1.14E-02
60	GO:0043130: ubiquitin binding	1.14E-02
61	GO:0004176: ATP-dependent peptidase activity	1.30E-02
62	GO:0003727: single-stranded RNA binding	1.57E-02
63	GO:0019843: rRNA binding	1.62E-02
64	GO:0008080: N-acetyltransferase activity	1.85E-02
65	GO:0004872: receptor activity	2.05E-02
66	GO:0019901: protein kinase binding	2.05E-02
67	GO:0004518: nuclease activity	2.25E-02
68	GO:0005506: iron ion binding	2.36E-02
69	GO:0008237: metallopeptidase activity	2.57E-02
70	GO:0005200: structural constituent of cytoskeleton	2.57E-02
71	GO:0016168: chlorophyll binding	2.91E-02
72	GO:0008236: serine-type peptidase activity	3.25E-02
73	GO:0000287: magnesium ion binding	3.41E-02
74	GO:0016788: hydrolase activity, acting on ester bonds	3.54E-02
75	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.62E-02
76	GO:0004222: metalloendopeptidase activity	3.62E-02
77	GO:0050897: cobalt ion binding	3.74E-02
78	GO:0003746: translation elongation factor activity	3.99E-02
79	GO:0016740: transferase activity	4.05E-02
80	GO:0004185: serine-type carboxypeptidase activity	4.78E-02
81	GO:0046872: metal ion binding	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0009507: chloroplast	6.27E-26
3	GO:0009535: chloroplast thylakoid membrane	6.03E-12
4	GO:0009570: chloroplast stroma	9.22E-07
5	GO:0008274: gamma-tubulin ring complex	2.23E-06
6	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.27E-06
7	GO:0000923: equatorial microtubule organizing center	1.87E-05
8	GO:0030286: dynein complex	3.41E-05
9	GO:0031021: interphase microtubule organizing center	2.18E-04
10	GO:0005845: mRNA cap binding complex	2.18E-04
11	GO:0031972: chloroplast intermembrane space	2.18E-04
12	GO:0009536: plastid	2.41E-04
13	GO:0005846: nuclear cap binding complex	4.86E-04
14	GO:0016605: PML body	7.90E-04
15	GO:0005640: nuclear outer membrane	7.90E-04
16	GO:0009528: plastid inner membrane	7.90E-04
17	GO:0005875: microtubule associated complex	8.29E-04
18	GO:0042651: thylakoid membrane	1.01E-03
19	GO:0042646: plastid nucleoid	1.13E-03
20	GO:0005828: kinetochore microtubule	1.50E-03
21	GO:0000930: gamma-tubulin complex	1.50E-03
22	GO:0009517: PSII associated light-harvesting complex II	1.50E-03
23	GO:0000776: kinetochore	1.91E-03
24	GO:0055035: plastid thylakoid membrane	1.91E-03
25	GO:0072686: mitotic spindle	1.91E-03
26	GO:0009840: chloroplastic endopeptidase Clp complex	2.83E-03
27	GO:0000123: histone acetyltransferase complex	3.33E-03
28	GO:0045273: respiratory chain complex II	3.86E-03
29	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	3.86E-03
30	GO:0005811: lipid particle	4.42E-03
31	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	4.42E-03
32	GO:0042644: chloroplast nucleoid	5.00E-03
33	GO:0000922: spindle pole	5.00E-03
34	GO:0016604: nuclear body	5.62E-03
35	GO:0009574: preprophase band	8.30E-03
36	GO:0031969: chloroplast membrane	9.40E-03
37	GO:0043234: protein complex	1.06E-02
38	GO:0009579: thylakoid	1.10E-02
39	GO:0009534: chloroplast thylakoid	1.11E-02
40	GO:0015935: small ribosomal subunit	1.30E-02
41	GO:0009543: chloroplast thylakoid lumen	1.62E-02
42	GO:0009523: photosystem II	2.05E-02
43	GO:0009295: nucleoid	2.57E-02
44	GO:0005840: ribosome	2.59E-02
45	GO:0019005: SCF ubiquitin ligase complex	3.37E-02
46	GO:0009707: chloroplast outer membrane	3.37E-02
47	GO:0009941: chloroplast envelope	4.04E-02
48	GO:0005819: spindle	4.25E-02