co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G47250

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006489: dolichyl diphosphate biosynthetic process	0.00E+00
2	GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process	0.00E+00
3	GO:1903857: negative regulation of cytokinin dehydrogenase activity	0.00E+00
4	GO:0009264: deoxyribonucleotide catabolic process	0.00E+00
5	GO:0030149: sphingolipid catabolic process	0.00E+00
6	GO:1990569: UDP-N-acetylglucosamine transmembrane transport	0.00E+00
7	GO:0015789: UDP-N-acetylgalactosamine transport	0.00E+00
8	GO:0006511: ubiquitin-dependent protein catabolic process	2.60E-30
9	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	3.25E-10
10	GO:0030163: protein catabolic process	3.34E-10
11	GO:0030433: ubiquitin-dependent ERAD pathway	2.70E-07
12	GO:0051788: response to misfolded protein	5.49E-07
13	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	6.00E-07
14	GO:0051603: proteolysis involved in cellular protein catabolic process	1.01E-06
15	GO:0006626: protein targeting to mitochondrion	4.58E-06
16	GO:0001676: long-chain fatty acid metabolic process	4.93E-06
17	GO:0046686: response to cadmium ion	1.94E-05
18	GO:0043248: proteasome assembly	2.35E-05
19	GO:0042176: regulation of protein catabolic process	2.35E-05
20	GO:0046685: response to arsenic-containing substance	9.24E-05
21	GO:0035266: meristem growth	1.02E-04
22	GO:0007292: female gamete generation	1.02E-04
23	GO:0006434: seryl-tRNA aminoacylation	1.02E-04
24	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	1.02E-04
25	GO:0010043: response to zinc ion	1.46E-04
26	GO:0010015: root morphogenesis	1.56E-04
27	GO:0045087: innate immune response	1.67E-04
28	GO:0006820: anion transport	1.82E-04
29	GO:0009156: ribonucleoside monophosphate biosynthetic process	2.40E-04
30	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	2.40E-04
31	GO:0015786: UDP-glucose transport	2.40E-04
32	GO:0019752: carboxylic acid metabolic process	2.40E-04
33	GO:0009965: leaf morphogenesis	2.78E-04
34	GO:0015783: GDP-fucose transport	3.99E-04
35	GO:0060968: regulation of gene silencing	3.99E-04
36	GO:0055074: calcium ion homeostasis	3.99E-04
37	GO:0046513: ceramide biosynthetic process	5.73E-04
38	GO:0072334: UDP-galactose transmembrane transport	5.73E-04
39	GO:0009647: skotomorphogenesis	5.73E-04
40	GO:0009165: nucleotide biosynthetic process	7.62E-04
41	GO:0010363: regulation of plant-type hypersensitive response	7.62E-04
42	GO:0010193: response to ozone	8.02E-04
43	GO:0097428: protein maturation by iron-sulfur cluster transfer	9.62E-04
44	GO:1902183: regulation of shoot apical meristem development	9.62E-04
45	GO:0006413: translational initiation	1.00E-03
46	GO:0016579: protein deubiquitination	1.08E-03
47	GO:0001731: formation of translation preinitiation complex	1.17E-03
48	GO:0048827: phyllome development	1.17E-03
49	GO:0048232: male gamete generation	1.17E-03
50	GO:0045040: protein import into mitochondrial outer membrane	1.17E-03
51	GO:0009793: embryo development ending in seed dormancy	1.32E-03
52	GO:0000245: spliceosomal complex assembly	1.40E-03
53	GO:0009554: megasporogenesis	1.40E-03
54	GO:0009955: adaxial/abaxial pattern specification	1.40E-03
55	GO:0048528: post-embryonic root development	1.65E-03
56	GO:0000338: protein deneddylation	1.65E-03
57	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	1.65E-03
58	GO:0031540: regulation of anthocyanin biosynthetic process	1.90E-03
59	GO:0006644: phospholipid metabolic process	1.90E-03
60	GO:0010078: maintenance of root meristem identity	1.90E-03
61	GO:0010204: defense response signaling pathway, resistance gene-independent	2.17E-03
62	GO:0006631: fatty acid metabolic process	2.19E-03
63	GO:0008283: cell proliferation	2.38E-03
64	GO:0015780: nucleotide-sugar transport	2.45E-03
65	GO:0098656: anion transmembrane transport	2.45E-03
66	GO:0042761: very long-chain fatty acid biosynthetic process	2.74E-03
67	GO:0048829: root cap development	3.05E-03
68	GO:0009870: defense response signaling pathway, resistance gene-dependent	3.05E-03
69	GO:0006913: nucleocytoplasmic transport	3.36E-03
70	GO:0006446: regulation of translational initiation	4.37E-03
71	GO:0009933: meristem structural organization	4.37E-03
72	GO:0090351: seedling development	4.72E-03
73	GO:0034976: response to endoplasmic reticulum stress	5.09E-03
74	GO:0006487: protein N-linked glycosylation	5.46E-03
75	GO:0009116: nucleoside metabolic process	5.46E-03
76	GO:0000027: ribosomal large subunit assembly	5.46E-03
77	GO:0030150: protein import into mitochondrial matrix	5.46E-03
78	GO:0007005: mitochondrion organization	6.64E-03
79	GO:0010584: pollen exine formation	7.48E-03
80	GO:0009735: response to cytokinin	7.48E-03
81	GO:0051028: mRNA transport	7.91E-03
82	GO:0008033: tRNA processing	8.35E-03
83	GO:0000413: protein peptidyl-prolyl isomerization	8.35E-03
84	GO:0008360: regulation of cell shape	8.80E-03
85	GO:0006520: cellular amino acid metabolic process	8.80E-03
86	GO:0009651: response to salt stress	9.34E-03
87	GO:0008654: phospholipid biosynthetic process	9.73E-03
88	GO:0048825: cotyledon development	9.73E-03
89	GO:0006457: protein folding	1.16E-02
90	GO:0007275: multicellular organism development	1.37E-02
91	GO:0010311: lateral root formation	1.65E-02
92	GO:0006811: ion transport	1.71E-02
93	GO:0006499: N-terminal protein myristoylation	1.71E-02
94	GO:0045454: cell redox homeostasis	1.80E-02
95	GO:0006412: translation	1.99E-02
96	GO:0009408: response to heat	2.22E-02
97	GO:0009640: photomorphogenesis	2.26E-02
98	GO:0048364: root development	2.32E-02
99	GO:0008643: carbohydrate transport	2.39E-02
100	GO:0006812: cation transport	2.66E-02
101	GO:0015031: protein transport	2.77E-02
102	GO:0009809: lignin biosynthetic process	2.80E-02
103	GO:0009585: red, far-red light phototransduction	2.80E-02
104	GO:0009736: cytokinin-activated signaling pathway	2.80E-02
105	GO:0048367: shoot system development	3.22E-02
106	GO:0009908: flower development	3.56E-02
107	GO:0018105: peptidyl-serine phosphorylation	3.67E-02
108	GO:0009742: brassinosteroid mediated signaling pathway	3.75E-02
109	GO:0000398: mRNA splicing, via spliceosome	3.98E-02

Rank	GO Term	Adjusted P value
1	GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity	0.00E+00
2	GO:0008117: sphinganine-1-phosphate aldolase activity	0.00E+00
3	GO:0004298: threonine-type endopeptidase activity	8.04E-26
4	GO:0008233: peptidase activity	1.03E-16
5	GO:0036402: proteasome-activating ATPase activity	3.25E-10
6	GO:0017025: TBP-class protein binding	8.18E-08
7	GO:0102391: decanoate--CoA ligase activity	3.34E-05
8	GO:0004467: long-chain fatty acid-CoA ligase activity	4.52E-05
9	GO:0015288: porin activity	5.89E-05
10	GO:0008308: voltage-gated anion channel activity	7.46E-05
11	GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	1.02E-04
12	GO:0004828: serine-tRNA ligase activity	1.02E-04
13	GO:0050200: plasmalogen synthase activity	1.02E-04
14	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.19E-04
15	GO:0030234: enzyme regulator activity	1.33E-04
16	GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity	2.40E-04
17	GO:0050291: sphingosine N-acyltransferase activity	2.40E-04
18	GO:0016887: ATPase activity	2.49E-04
19	GO:0005457: GDP-fucose transmembrane transporter activity	3.99E-04
20	GO:0008253: 5'-nucleotidase activity	3.99E-04
21	GO:0004148: dihydrolipoyl dehydrogenase activity	3.99E-04
22	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	4.03E-04
23	GO:0008097: 5S rRNA binding	5.73E-04
24	GO:0004749: ribose phosphate diphosphokinase activity	5.73E-04
25	GO:0005460: UDP-glucose transmembrane transporter activity	5.73E-04
26	GO:0015368: calcium:cation antiporter activity	7.62E-04
27	GO:0015369: calcium:proton antiporter activity	7.62E-04
28	GO:0005459: UDP-galactose transmembrane transporter activity	9.62E-04
29	GO:0031369: translation initiation factor binding	1.17E-03
30	GO:0003743: translation initiation factor activity	1.32E-03
31	GO:0016831: carboxy-lyase activity	1.65E-03
32	GO:0005338: nucleotide-sugar transmembrane transporter activity	1.65E-03
33	GO:0000166: nucleotide binding	1.68E-03
34	GO:0015491: cation:cation antiporter activity	1.90E-03
35	GO:0052747: sinapyl alcohol dehydrogenase activity	1.90E-03
36	GO:0000989: transcription factor activity, transcription factor binding	2.45E-03
37	GO:0045309: protein phosphorylated amino acid binding	2.74E-03
38	GO:0019904: protein domain specific binding	3.36E-03
39	GO:0005515: protein binding	3.47E-03
40	GO:0045551: cinnamyl-alcohol dehydrogenase activity	3.69E-03
41	GO:0003735: structural constituent of ribosome	3.76E-03
42	GO:0015266: protein channel activity	4.02E-03
43	GO:0004175: endopeptidase activity	4.37E-03
44	GO:0003714: transcription corepressor activity	5.46E-03
45	GO:0004540: ribonuclease activity	6.24E-03
46	GO:0008514: organic anion transmembrane transporter activity	7.48E-03
47	GO:0003756: protein disulfide isomerase activity	7.48E-03
48	GO:0010181: FMN binding	9.26E-03
49	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.02E-02
50	GO:0050897: cobalt ion binding	1.77E-02
51	GO:0003746: translation elongation factor activity	1.89E-02
52	GO:0051539: 4 iron, 4 sulfur cluster binding	2.07E-02
53	GO:0005524: ATP binding	2.43E-02
54	GO:0005198: structural molecule activity	2.46E-02
55	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.52E-02
56	GO:0003729: mRNA binding	3.37E-02
57	GO:0051082: unfolded protein binding	3.59E-02
58	GO:0016746: transferase activity, transferring acyl groups	3.67E-02
59	GO:0019843: rRNA binding	4.22E-02
60	GO:0016829: lyase activity	4.46E-02
61	GO:0030170: pyridoxal phosphate binding	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0019867: outer membrane	0.00E+00
2	GO:0000502: proteasome complex	6.08E-51
3	GO:0005839: proteasome core complex	8.04E-26
4	GO:0019773: proteasome core complex, alpha-subunit complex	8.29E-17
5	GO:0005829: cytosol	4.54E-16
6	GO:0008541: proteasome regulatory particle, lid subcomplex	6.20E-13
7	GO:0031595: nuclear proteasome complex	3.81E-12
8	GO:0008540: proteasome regulatory particle, base subcomplex	5.30E-11
9	GO:0022626: cytosolic ribosome	6.90E-10
10	GO:0031597: cytosolic proteasome complex	7.25E-10
11	GO:0005774: vacuolar membrane	8.88E-07
12	GO:0005838: proteasome regulatory particle	2.08E-06
13	GO:0005741: mitochondrial outer membrane	1.42E-05
14	GO:0005737: cytoplasm	1.56E-05
15	GO:0009506: plasmodesma	6.45E-05
16	GO:0046930: pore complex	7.46E-05
17	GO:0005742: mitochondrial outer membrane translocase complex	7.46E-05
18	GO:0005852: eukaryotic translation initiation factor 3 complex	1.56E-04
19	GO:0005758: mitochondrial intermembrane space	3.32E-04
20	GO:0046861: glyoxysomal membrane	3.99E-04
21	GO:0005773: vacuole	6.51E-04
22	GO:0000813: ESCRT I complex	9.62E-04
23	GO:0000974: Prp19 complex	1.17E-03
24	GO:0016282: eukaryotic 43S preinitiation complex	1.17E-03
25	GO:0005788: endoplasmic reticulum lumen	1.20E-03
26	GO:0005783: endoplasmic reticulum	1.25E-03
27	GO:0033290: eukaryotic 48S preinitiation complex	1.40E-03
28	GO:0005634: nucleus	1.56E-03
29	GO:0015934: large ribosomal subunit	1.69E-03
30	GO:0009514: glyoxysome	2.17E-03
31	GO:0008180: COP9 signalosome	2.45E-03
32	GO:0022625: cytosolic large ribosomal subunit	2.63E-03
33	GO:0071011: precatalytic spliceosome	2.74E-03
34	GO:0005730: nucleolus	2.83E-03
35	GO:0071013: catalytic step 2 spliceosome	3.36E-03
36	GO:0005743: mitochondrial inner membrane	3.69E-03
37	GO:0005834: heterotrimeric G-protein complex	4.01E-03
38	GO:0019013: viral nucleocapsid	4.02E-03
39	GO:0070469: respiratory chain	5.85E-03
40	GO:0005744: mitochondrial inner membrane presequence translocase complex	7.48E-03
41	GO:0005789: endoplasmic reticulum membrane	9.33E-03
42	GO:0022627: cytosolic small ribosomal subunit	1.03E-02
43	GO:0016592: mediator complex	1.07E-02
44	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.33E-02
45	GO:0005643: nuclear pore	1.60E-02
46	GO:0005819: spindle	2.01E-02
47	GO:0005840: ribosome	2.17E-02
48	GO:0005635: nuclear envelope	2.94E-02
49	GO:0016020: membrane	3.05E-02
50	GO:0005681: spliceosomal complex	3.15E-02
51	GO:0005747: mitochondrial respiratory chain complex I	3.22E-02
52	GO:0048046: apoplast	3.40E-02
53	GO:0005732: small nucleolar ribonucleoprotein complex	3.82E-02
54	GO:0005618: cell wall	3.85E-02
55	GO:0009524: phragmoplast	4.38E-02
56	GO:0005777: peroxisome	4.51E-02
57	GO:0005759: mitochondrial matrix	4.95E-02