Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G47128

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033542: fatty acid beta-oxidation, unsaturated, even number0.00E+00
2GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
3GO:0009722: detection of cytokinin stimulus0.00E+00
4GO:0006593: ornithine catabolic process0.00E+00
5GO:0071345: cellular response to cytokine stimulus0.00E+00
6GO:0071284: cellular response to lead ion0.00E+00
7GO:0042430: indole-containing compound metabolic process0.00E+00
8GO:0023052: signaling0.00E+00
9GO:0046177: D-gluconate catabolic process0.00E+00
10GO:0009398: FMN biosynthetic process0.00E+00
11GO:1903647: negative regulation of chlorophyll catabolic process0.00E+00
12GO:0042362: fat-soluble vitamin biosynthetic process0.00E+00
13GO:0055114: oxidation-reduction process5.13E-06
14GO:0006572: tyrosine catabolic process1.21E-05
15GO:0010189: vitamin E biosynthetic process7.58E-05
16GO:0009651: response to salt stress1.02E-04
17GO:0005975: carbohydrate metabolic process1.66E-04
18GO:0006148: inosine catabolic process1.71E-04
19GO:0006835: dicarboxylic acid transport1.71E-04
20GO:0000305: response to oxygen radical1.71E-04
21GO:1903409: reactive oxygen species biosynthetic process1.71E-04
22GO:0009852: auxin catabolic process1.71E-04
23GO:0031468: nuclear envelope reassembly1.71E-04
24GO:0019544: arginine catabolic process to glutamate1.71E-04
25GO:0015798: myo-inositol transport1.71E-04
26GO:0002213: defense response to insect3.73E-04
27GO:0009915: phloem sucrose loading3.87E-04
28GO:0006212: uracil catabolic process3.87E-04
29GO:0019483: beta-alanine biosynthetic process3.87E-04
30GO:1902000: homogentisate catabolic process3.87E-04
31GO:0080026: response to indolebutyric acid3.87E-04
32GO:0019441: tryptophan catabolic process to kynurenine3.87E-04
33GO:0006807: nitrogen compound metabolic process4.24E-04
34GO:0006081: cellular aldehyde metabolic process6.32E-04
35GO:0045836: positive regulation of meiotic nuclear division6.32E-04
36GO:0044746: amino acid transmembrane export6.32E-04
37GO:0051646: mitochondrion localization6.32E-04
38GO:0043617: cellular response to sucrose starvation6.32E-04
39GO:0016226: iron-sulfur cluster assembly8.69E-04
40GO:0051603: proteolysis involved in cellular protein catabolic process8.97E-04
41GO:1902476: chloride transmembrane transport9.04E-04
42GO:0006516: glycoprotein catabolic process9.04E-04
43GO:0080024: indolebutyric acid metabolic process9.04E-04
44GO:0006646: phosphatidylethanolamine biosynthetic process1.20E-03
45GO:0015743: malate transport1.20E-03
46GO:0051781: positive regulation of cell division1.20E-03
47GO:0071249: cellular response to nitrate1.20E-03
48GO:0015846: polyamine transport1.20E-03
49GO:0006749: glutathione metabolic process1.20E-03
50GO:0032366: intracellular sterol transport1.20E-03
51GO:0044550: secondary metabolite biosynthetic process1.30E-03
52GO:0009229: thiamine diphosphate biosynthetic process1.52E-03
53GO:0045927: positive regulation of growth1.52E-03
54GO:0009697: salicylic acid biosynthetic process1.52E-03
55GO:1901657: glycosyl compound metabolic process1.78E-03
56GO:0006555: methionine metabolic process1.87E-03
57GO:0042732: D-xylose metabolic process1.87E-03
58GO:0006559: L-phenylalanine catabolic process1.87E-03
59GO:0003006: developmental process involved in reproduction1.87E-03
60GO:0009228: thiamine biosynthetic process1.87E-03
61GO:0002238: response to molecule of fungal origin1.87E-03
62GO:0006561: proline biosynthetic process1.87E-03
63GO:0019509: L-methionine salvage from methylthioadenosine2.24E-03
64GO:1901001: negative regulation of response to salt stress2.24E-03
65GO:0009615: response to virus2.26E-03
66GO:0009816: defense response to bacterium, incompatible interaction2.39E-03
67GO:0050790: regulation of catalytic activity2.64E-03
68GO:0080027: response to herbivore2.64E-03
69GO:0006955: immune response2.64E-03
70GO:0006821: chloride transport2.64E-03
71GO:0009817: defense response to fungus, incompatible interaction2.94E-03
72GO:0009231: riboflavin biosynthetic process3.06E-03
73GO:0006811: ion transport3.23E-03
74GO:0007568: aging3.39E-03
75GO:0043562: cellular response to nitrogen levels3.50E-03
76GO:0015996: chlorophyll catabolic process3.50E-03
77GO:0006099: tricarboxylic acid cycle3.88E-03
78GO:0006098: pentose-phosphate shunt3.95E-03
79GO:0009821: alkaloid biosynthetic process3.95E-03
80GO:0080144: amino acid homeostasis3.95E-03
81GO:0006631: fatty acid metabolic process4.41E-03
82GO:0051453: regulation of intracellular pH4.44E-03
83GO:0031146: SCF-dependent proteasomal ubiquitin-dependent protein catabolic process4.44E-03
84GO:0009926: auxin polar transport4.78E-03
85GO:0045036: protein targeting to chloroplast4.93E-03
86GO:0009636: response to toxic substance5.37E-03
87GO:0030148: sphingolipid biosynthetic process5.45E-03
88GO:0006378: mRNA polyadenylation5.45E-03
89GO:0009684: indoleacetic acid biosynthetic process5.45E-03
90GO:0009723: response to ethylene5.55E-03
91GO:0071365: cellular response to auxin stimulus5.98E-03
92GO:0012501: programmed cell death5.98E-03
93GO:0015706: nitrate transport5.98E-03
94GO:0010152: pollen maturation5.98E-03
95GO:0042538: hyperosmotic salinity response5.99E-03
96GO:0050826: response to freezing6.54E-03
97GO:0009725: response to hormone6.54E-03
98GO:0006094: gluconeogenesis6.54E-03
99GO:0010102: lateral root morphogenesis6.54E-03
100GO:0006108: malate metabolic process6.54E-03
101GO:0009691: cytokinin biosynthetic process6.54E-03
102GO:0009266: response to temperature stimulus7.11E-03
103GO:0002237: response to molecule of bacterial origin7.11E-03
104GO:0042343: indole glucosinolate metabolic process7.69E-03
105GO:0007030: Golgi organization7.69E-03
106GO:0010167: response to nitrate7.69E-03
107GO:0010039: response to iron ion7.69E-03
108GO:0048316: seed development7.86E-03
109GO:0009626: plant-type hypersensitive response8.11E-03
110GO:0019762: glucosinolate catabolic process8.30E-03
111GO:0006636: unsaturated fatty acid biosynthetic process8.30E-03
112GO:0016042: lipid catabolic process9.60E-03
113GO:0048511: rhythmic process1.02E-02
114GO:0098542: defense response to other organism1.02E-02
115GO:0009269: response to desiccation1.02E-02
116GO:0051321: meiotic cell cycle1.02E-02
117GO:0006366: transcription from RNA polymerase II promoter1.02E-02
118GO:0003333: amino acid transmembrane transport1.02E-02
119GO:0019748: secondary metabolic process1.09E-02
120GO:0035428: hexose transmembrane transport1.09E-02
121GO:0009625: response to insect1.16E-02
122GO:0006012: galactose metabolic process1.16E-02
123GO:0009058: biosynthetic process1.21E-02
124GO:0048443: stamen development1.23E-02
125GO:0042744: hydrogen peroxide catabolic process1.31E-02
126GO:0010087: phloem or xylem histogenesis1.37E-02
127GO:0042335: cuticle development1.37E-02
128GO:0042391: regulation of membrane potential1.37E-02
129GO:0080022: primary root development1.37E-02
130GO:0034220: ion transmembrane transport1.37E-02
131GO:0071555: cell wall organization1.44E-02
132GO:0046323: glucose import1.45E-02
133GO:0010268: brassinosteroid homeostasis1.45E-02
134GO:0010154: fruit development1.45E-02
135GO:0061025: membrane fusion1.52E-02
136GO:0006814: sodium ion transport1.52E-02
137GO:0009646: response to absence of light1.52E-02
138GO:0009734: auxin-activated signaling pathway1.54E-02
139GO:0010150: leaf senescence1.59E-02
140GO:0055072: iron ion homeostasis1.60E-02
141GO:0008654: phospholipid biosynthetic process1.60E-02
142GO:0016132: brassinosteroid biosynthetic process1.68E-02
143GO:0048510: regulation of timing of transition from vegetative to reproductive phase1.68E-02
144GO:0006635: fatty acid beta-oxidation1.68E-02
145GO:0009733: response to auxin1.72E-02
146GO:0016125: sterol metabolic process1.93E-02
147GO:0010252: auxin homeostasis1.93E-02
148GO:0009627: systemic acquired resistance2.36E-02
149GO:0010411: xyloglucan metabolic process2.45E-02
150GO:0048573: photoperiodism, flowering2.45E-02
151GO:0006810: transport2.56E-02
152GO:0008219: cell death2.64E-02
153GO:0048767: root hair elongation2.73E-02
154GO:0010311: lateral root formation2.73E-02
155GO:0055085: transmembrane transport2.78E-02
156GO:0009407: toxin catabolic process2.83E-02
157GO:0048527: lateral root development2.93E-02
158GO:0010119: regulation of stomatal movement2.93E-02
159GO:0006865: amino acid transport3.02E-02
160GO:0042542: response to hydrogen peroxide3.64E-02
161GO:0009744: response to sucrose3.74E-02
162GO:0042546: cell wall biogenesis3.85E-02
163GO:0031347: regulation of defense response4.29E-02
164GO:0009751: response to salicylic acid4.43E-02
165GO:0006857: oligopeptide transport4.85E-02
166GO:0042742: defense response to bacterium4.93E-02
167GO:0006979: response to oxidative stress4.98E-02
RankGO TermAdjusted P value
1GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
2GO:0004587: ornithine-oxo-acid transaminase activity0.00E+00
3GO:0008531: riboflavin kinase activity0.00E+00
4GO:0003837: beta-ureidopropionase activity0.00E+00
5GO:0009045: xylose isomerase activity0.00E+00
6GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
7GO:0046316: gluconokinase activity0.00E+00
8GO:0032441: pheophorbide a oxygenase activity0.00E+00
9GO:0015391: nucleobase:cation symporter activity0.00E+00
10GO:0050334: thiaminase activity0.00E+00
11GO:0010176: homogentisate phytyltransferase activity0.00E+00
12GO:0017153: sodium:dicarboxylate symporter activity0.00E+00
13GO:0033961: cis-stilbene-oxide hydrolase activity0.00E+00
14GO:0004411: homogentisate 1,2-dioxygenase activity0.00E+00
15GO:0052692: raffinose alpha-galactosidase activity5.25E-06
16GO:0010277: chlorophyllide a oxygenase [overall] activity5.25E-06
17GO:0004557: alpha-galactosidase activity5.25E-06
18GO:0004301: epoxide hydrolase activity2.25E-05
19GO:0016788: hydrolase activity, acting on ester bonds1.34E-04
20GO:0004197: cysteine-type endopeptidase activity1.43E-04
21GO:0016229: steroid dehydrogenase activity1.71E-04
22GO:0046480: galactolipid galactosyltransferase activity1.71E-04
23GO:0004347: glucose-6-phosphate isomerase activity1.71E-04
24GO:0080079: cellobiose glucosidase activity1.71E-04
25GO:0004560: alpha-L-fucosidase activity1.71E-04
26GO:0001530: lipopolysaccharide binding1.71E-04
27GO:0016780: phosphotransferase activity, for other substituted phosphate groups1.71E-04
28GO:0070401: NADP+ binding1.71E-04
29GO:0045437: uridine nucleosidase activity1.71E-04
30GO:0080023: 3R-hydroxyacyl-CoA dehydratase activity1.71E-04
31GO:0047560: 3-dehydrosphinganine reductase activity1.71E-04
32GO:0009671: nitrate:proton symporter activity1.71E-04
33GO:0004307: ethanolaminephosphotransferase activity1.71E-04
34GO:0009672: auxin:proton symporter activity2.37E-04
35GO:0005506: iron ion binding2.45E-04
36GO:0004362: glutathione-disulfide reductase activity3.87E-04
37GO:0004566: beta-glucuronidase activity3.87E-04
38GO:0015179: L-amino acid transmembrane transporter activity3.87E-04
39GO:0004047: aminomethyltransferase activity3.87E-04
40GO:0047724: inosine nucleosidase activity3.87E-04
41GO:0003919: FMN adenylyltransferase activity3.87E-04
42GO:0030572: phosphatidyltransferase activity3.87E-04
43GO:0004142: diacylglycerol cholinephosphotransferase activity3.87E-04
44GO:0004061: arylformamidase activity3.87E-04
45GO:0051980: iron-nicotianamine transmembrane transporter activity3.87E-04
46GO:0005366: myo-inositol:proton symporter activity3.87E-04
47GO:0080109: indole-3-acetonitrile nitrile hydratase activity3.87E-04
48GO:0008422: beta-glucosidase activity4.80E-04
49GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity6.32E-04
50GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity6.32E-04
51GO:0004838: L-tyrosine:2-oxoglutarate aminotransferase activity6.32E-04
52GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity6.32E-04
53GO:0080061: indole-3-acetonitrile nitrilase activity6.32E-04
54GO:0051536: iron-sulfur cluster binding6.60E-04
55GO:0020037: heme binding7.27E-04
56GO:0015186: L-glutamine transmembrane transporter activity9.04E-04
57GO:0000257: nitrilase activity9.04E-04
58GO:0004108: citrate (Si)-synthase activity9.04E-04
59GO:0015203: polyamine transmembrane transporter activity9.04E-04
60GO:0008234: cysteine-type peptidase activity9.76E-04
61GO:0004659: prenyltransferase activity1.20E-03
62GO:0010011: auxin binding1.20E-03
63GO:0080032: methyl jasmonate esterase activity1.20E-03
64GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds1.20E-03
65GO:0050302: indole-3-acetaldehyde oxidase activity1.20E-03
66GO:0005253: anion channel activity1.20E-03
67GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen1.69E-03
68GO:0016491: oxidoreductase activity1.78E-03
69GO:0004866: endopeptidase inhibitor activity1.87E-03
70GO:0005247: voltage-gated chloride channel activity1.87E-03
71GO:0080030: methyl indole-3-acetate esterase activity1.87E-03
72GO:0004029: aldehyde dehydrogenase (NAD) activity1.87E-03
73GO:0051117: ATPase binding1.87E-03
74GO:0016615: malate dehydrogenase activity1.87E-03
75GO:0019825: oxygen binding2.12E-03
76GO:0030060: L-malate dehydrogenase activity2.24E-03
77GO:0005261: cation channel activity2.24E-03
78GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.24E-03
79GO:0051213: dioxygenase activity2.26E-03
80GO:0015140: malate transmembrane transporter activity2.64E-03
81GO:0016798: hydrolase activity, acting on glycosyl bonds2.65E-03
82GO:0102483: scopolin beta-glucosidase activity2.65E-03
83GO:0004034: aldose 1-epimerase activity3.06E-03
84GO:0004033: aldo-keto reductase (NADP) activity3.06E-03
85GO:0004869: cysteine-type endopeptidase inhibitor activity3.06E-03
86GO:0016844: strictosidine synthase activity4.44E-03
87GO:0015112: nitrate transmembrane transporter activity4.44E-03
88GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity4.44E-03
89GO:0015174: basic amino acid transmembrane transporter activity4.44E-03
90GO:0051537: 2 iron, 2 sulfur cluster binding5.17E-03
91GO:0015198: oligopeptide transporter activity5.98E-03
92GO:0008378: galactosyltransferase activity5.98E-03
93GO:0004022: alcohol dehydrogenase (NAD) activity6.54E-03
94GO:0052689: carboxylic ester hydrolase activity6.89E-03
95GO:0015171: amino acid transmembrane transporter activity7.12E-03
96GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.55E-03
97GO:0030552: cAMP binding7.69E-03
98GO:0004867: serine-type endopeptidase inhibitor activity7.69E-03
99GO:0030553: cGMP binding7.69E-03
100GO:0008061: chitin binding7.69E-03
101GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups7.86E-03
102GO:0022857: transmembrane transporter activity8.63E-03
103GO:0043130: ubiquitin binding8.92E-03
104GO:0001046: core promoter sequence-specific DNA binding8.92E-03
105GO:0046872: metal ion binding9.14E-03
106GO:0016746: transferase activity, transferring acyl groups9.44E-03
107GO:0005216: ion channel activity9.56E-03
108GO:0008324: cation transmembrane transporter activity9.56E-03
109GO:0035251: UDP-glucosyltransferase activity1.02E-02
110GO:0004540: ribonuclease activity1.02E-02
111GO:0030170: pyridoxal phosphate binding1.28E-02
112GO:0005249: voltage-gated potassium channel activity1.37E-02
113GO:0030551: cyclic nucleotide binding1.37E-02
114GO:0016787: hydrolase activity1.48E-02
115GO:0005355: glucose transmembrane transporter activity1.52E-02
116GO:0016762: xyloglucan:xyloglucosyl transferase activity1.68E-02
117GO:0008483: transaminase activity2.01E-02
118GO:0015250: water channel activity2.18E-02
119GO:0009931: calcium-dependent protein serine/threonine kinase activity2.36E-02
120GO:0004683: calmodulin-dependent protein kinase activity2.45E-02
121GO:0004601: peroxidase activity2.46E-02
122GO:0050660: flavin adenine dinucleotide binding2.85E-02
123GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding2.93E-02
124GO:0004497: monooxygenase activity3.05E-02
125GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.12E-02
126GO:0050661: NADP binding3.43E-02
127GO:0004364: glutathione transferase activity3.64E-02
128GO:0004185: serine-type carboxypeptidase activity3.74E-02
129GO:0042803: protein homodimerization activity3.82E-02
130GO:0015293: symporter activity4.06E-02
131GO:0005198: structural molecule activity4.06E-02
132GO:0016298: lipase activity4.74E-02
RankGO TermAdjusted P value
1GO:0005773: vacuole1.56E-07
2GO:0005764: lysosome1.86E-05
3GO:0005829: cytosol3.64E-05
4GO:0005759: mitochondrial matrix4.06E-05
5GO:0005576: extracellular region2.84E-04
6GO:0005777: peroxisome3.31E-04
7GO:0005615: extracellular space5.10E-04
8GO:0005849: mRNA cleavage factor complex9.04E-04
9GO:0048046: apoplast1.48E-03
10GO:0055035: plastid thylakoid membrane1.52E-03
11GO:0034707: chloride channel complex1.87E-03
12GO:0005783: endoplasmic reticulum2.59E-03
13GO:0031359: integral component of chloroplast outer membrane2.64E-03
14GO:0005765: lysosomal membrane5.45E-03
15GO:0016020: membrane7.43E-03
16GO:0005789: endoplasmic reticulum membrane8.25E-03
17GO:0009706: chloroplast inner membrane9.16E-03
18GO:0005887: integral component of plasma membrane1.47E-02
19GO:0005618: cell wall1.54E-02
20GO:0009705: plant-type vacuole membrane1.59E-02
21GO:0005737: cytoplasm2.47E-02
22GO:0019005: SCF ubiquitin ligase complex2.64E-02
23GO:0009707: chloroplast outer membrane2.64E-02
24GO:0090406: pollen tube3.74E-02
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Gene type



Gene DE type