Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G45230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0009249: protein lipoylation0.00E+00
2GO:0015822: ornithine transport0.00E+00
3GO:0045747: positive regulation of Notch signaling pathway0.00E+00
4GO:0010423: negative regulation of brassinosteroid biosynthetic process0.00E+00
5GO:0071000: response to magnetism0.00E+00
6GO:0046460: neutral lipid biosynthetic process0.00E+00
7GO:0009583: detection of light stimulus0.00E+00
8GO:0032928: regulation of superoxide anion generation0.00E+00
9GO:0046294: formaldehyde catabolic process0.00E+00
10GO:0018316: peptide cross-linking via L-cystine0.00E+00
11GO:0009106: lipoate metabolic process0.00E+00
12GO:0097164: ammonium ion metabolic process0.00E+00
13GO:0036172: thiamine salvage0.00E+00
14GO:0006044: N-acetylglucosamine metabolic process0.00E+00
15GO:0010275: NAD(P)H dehydrogenase complex assembly9.75E-06
16GO:0010343: singlet oxygen-mediated programmed cell death9.75E-06
17GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation9.75E-06
18GO:0010117: photoprotection1.92E-04
19GO:0046283: anthocyanin-containing compound metabolic process1.92E-04
20GO:0010190: cytochrome b6f complex assembly2.73E-04
21GO:0080065: 4-alpha-methyl-delta7-sterol oxidation4.70E-04
22GO:0034970: histone H3-R2 methylation4.70E-04
23GO:0016031: tRNA import into mitochondrion4.70E-04
24GO:0034972: histone H3-R26 methylation4.70E-04
25GO:1902265: abscisic acid homeostasis4.70E-04
26GO:0034971: histone H3-R17 methylation4.70E-04
27GO:0072387: flavin adenine dinucleotide metabolic process4.70E-04
28GO:0071454: cellular response to anoxia4.70E-04
29GO:0071461: cellular response to redox state4.70E-04
30GO:0048438: floral whorl development4.70E-04
31GO:0000066: mitochondrial ornithine transport4.70E-04
32GO:0048564: photosystem I assembly5.86E-04
33GO:0009787: regulation of abscisic acid-activated signaling pathway5.86E-04
34GO:0022900: electron transport chain7.14E-04
35GO:1901529: positive regulation of anion channel activity1.01E-03
36GO:0009098: leucine biosynthetic process1.01E-03
37GO:0080005: photosystem stoichiometry adjustment1.01E-03
38GO:0060359: response to ammonium ion1.01E-03
39GO:0048255: mRNA stabilization1.01E-03
40GO:0010617: circadian regulation of calcium ion oscillation1.01E-03
41GO:0070981: L-asparagine biosynthetic process1.01E-03
42GO:0007154: cell communication1.01E-03
43GO:0099402: plant organ development1.01E-03
44GO:2000071: regulation of defense response by callose deposition1.01E-03
45GO:0006529: asparagine biosynthetic process1.01E-03
46GO:0016122: xanthophyll metabolic process1.01E-03
47GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine1.01E-03
48GO:0080153: negative regulation of reductive pentose-phosphate cycle1.01E-03
49GO:0045036: protein targeting to chloroplast1.17E-03
50GO:0016126: sterol biosynthetic process1.44E-03
51GO:0010325: raffinose family oligosaccharide biosynthetic process1.65E-03
52GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation1.65E-03
53GO:0031022: nuclear migration along microfilament1.65E-03
54GO:1902448: positive regulation of shade avoidance1.65E-03
55GO:0006048: UDP-N-acetylglucosamine biosynthetic process1.65E-03
56GO:0009150: purine ribonucleotide metabolic process1.65E-03
57GO:1901672: positive regulation of systemic acquired resistance1.65E-03
58GO:0071492: cellular response to UV-A1.65E-03
59GO:0006696: ergosterol biosynthetic process1.65E-03
60GO:0044375: regulation of peroxisome size1.65E-03
61GO:0043157: response to cation stress1.65E-03
62GO:0010476: gibberellin mediated signaling pathway1.65E-03
63GO:0010207: photosystem II assembly1.98E-03
64GO:0009647: skotomorphogenesis2.39E-03
65GO:0033014: tetrapyrrole biosynthetic process2.39E-03
66GO:0009399: nitrogen fixation2.39E-03
67GO:1901332: negative regulation of lateral root development2.39E-03
68GO:0009963: positive regulation of flavonoid biosynthetic process2.39E-03
69GO:0006882: cellular zinc ion homeostasis2.39E-03
70GO:2001141: regulation of RNA biosynthetic process2.39E-03
71GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.39E-03
72GO:1900864: mitochondrial RNA modification3.22E-03
73GO:0071486: cellular response to high light intensity3.22E-03
74GO:0009939: positive regulation of gibberellic acid mediated signaling pathway3.22E-03
75GO:0042274: ribosomal small subunit biogenesis3.22E-03
76GO:0031935: regulation of chromatin silencing3.22E-03
77GO:0009765: photosynthesis, light harvesting3.22E-03
78GO:0006221: pyrimidine nucleotide biosynthetic process3.22E-03
79GO:0009649: entrainment of circadian clock3.22E-03
80GO:1902347: response to strigolactone3.22E-03
81GO:0009902: chloroplast relocation3.22E-03
82GO:0008295: spermidine biosynthetic process3.22E-03
83GO:0034613: cellular protein localization3.22E-03
84GO:0006542: glutamine biosynthetic process3.22E-03
85GO:0016226: iron-sulfur cluster assembly3.66E-03
86GO:0000304: response to singlet oxygen4.13E-03
87GO:0016120: carotene biosynthetic process4.13E-03
88GO:0006656: phosphatidylcholine biosynthetic process4.13E-03
89GO:0009229: thiamine diphosphate biosynthetic process4.13E-03
90GO:0009107: lipoate biosynthetic process4.13E-03
91GO:0016117: carotenoid biosynthetic process4.71E-03
92GO:0010118: stomatal movement5.09E-03
93GO:0009959: negative gravitropism5.11E-03
94GO:0006555: methionine metabolic process5.11E-03
95GO:0060918: auxin transport5.11E-03
96GO:0031053: primary miRNA processing5.11E-03
97GO:0006796: phosphate-containing compound metabolic process5.11E-03
98GO:0042793: transcription from plastid promoter5.11E-03
99GO:0033365: protein localization to organelle5.11E-03
100GO:0009117: nucleotide metabolic process5.11E-03
101GO:1901371: regulation of leaf morphogenesis5.11E-03
102GO:0000741: karyogamy5.11E-03
103GO:0009228: thiamine biosynthetic process5.11E-03
104GO:0010304: PSII associated light-harvesting complex II catabolic process5.11E-03
105GO:0016070: RNA metabolic process5.11E-03
106GO:0009585: red, far-red light phototransduction5.54E-03
107GO:0009646: response to absence of light5.91E-03
108GO:0010310: regulation of hydrogen peroxide metabolic process6.17E-03
109GO:0019509: L-methionine salvage from methylthioadenosine6.17E-03
110GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.17E-03
111GO:0010076: maintenance of floral meristem identity6.17E-03
112GO:0034389: lipid particle organization6.17E-03
113GO:0009903: chloroplast avoidance movement6.17E-03
114GO:0010019: chloroplast-nucleus signaling pathway6.17E-03
115GO:0048444: floral organ morphogenesis6.17E-03
116GO:0030026: cellular manganese ion homeostasis7.30E-03
117GO:0080111: DNA demethylation7.30E-03
118GO:0051510: regulation of unidimensional cell growth7.30E-03
119GO:0009658: chloroplast organization7.90E-03
120GO:0016559: peroxisome fission8.49E-03
121GO:0045292: mRNA cis splicing, via spliceosome8.49E-03
122GO:0010928: regulation of auxin mediated signaling pathway8.49E-03
123GO:0009704: de-etiolation8.49E-03
124GO:0000105: histidine biosynthetic process8.49E-03
125GO:0009231: riboflavin biosynthetic process8.49E-03
126GO:0010099: regulation of photomorphogenesis9.75E-03
127GO:0071482: cellular response to light stimulus9.75E-03
128GO:0019430: removal of superoxide radicals9.75E-03
129GO:0010100: negative regulation of photomorphogenesis9.75E-03
130GO:0032544: plastid translation9.75E-03
131GO:0098656: anion transmembrane transport1.11E-02
132GO:0009821: alkaloid biosynthetic process1.11E-02
133GO:0046916: cellular transition metal ion homeostasis1.11E-02
134GO:0019432: triglyceride biosynthetic process1.11E-02
135GO:0006783: heme biosynthetic process1.11E-02
136GO:0009056: catabolic process1.11E-02
137GO:0015780: nucleotide-sugar transport1.11E-02
138GO:0048573: photoperiodism, flowering1.16E-02
139GO:0055114: oxidation-reduction process1.20E-02
140GO:0009638: phototropism1.25E-02
141GO:0006779: porphyrin-containing compound biosynthetic process1.25E-02
142GO:1900865: chloroplast RNA modification1.25E-02
143GO:1900426: positive regulation of defense response to bacterium1.25E-02
144GO:0055062: phosphate ion homeostasis1.39E-02
145GO:0051555: flavonol biosynthetic process1.39E-02
146GO:0009688: abscisic acid biosynthetic process1.39E-02
147GO:0009641: shade avoidance1.39E-02
148GO:0006816: calcium ion transport1.54E-02
149GO:0043085: positive regulation of catalytic activity1.54E-02
150GO:0009682: induced systemic resistance1.54E-02
151GO:0006352: DNA-templated transcription, initiation1.54E-02
152GO:0018119: peptidyl-cysteine S-nitrosylation1.54E-02
153GO:0006810: transport1.58E-02
154GO:0009637: response to blue light1.64E-02
155GO:0006790: sulfur compound metabolic process1.70E-02
156GO:0045037: protein import into chloroplast stroma1.70E-02
157GO:0010582: floral meristem determinacy1.70E-02
158GO:0006099: tricarboxylic acid cycle1.71E-02
159GO:0007623: circadian rhythm1.75E-02
160GO:0009451: RNA modification1.80E-02
161GO:0032259: methylation1.85E-02
162GO:0009767: photosynthetic electron transport chain1.86E-02
163GO:0030048: actin filament-based movement1.86E-02
164GO:0009785: blue light signaling pathway1.86E-02
165GO:0006108: malate metabolic process1.86E-02
166GO:0050826: response to freezing1.86E-02
167GO:0010075: regulation of meristem growth1.86E-02
168GO:0006839: mitochondrial transport1.87E-02
169GO:0034605: cellular response to heat2.03E-02
170GO:0006541: glutamine metabolic process2.03E-02
171GO:0019253: reductive pentose-phosphate cycle2.03E-02
172GO:0009266: response to temperature stimulus2.03E-02
173GO:0009640: photomorphogenesis2.12E-02
174GO:0007031: peroxisome organization2.20E-02
175GO:0000162: tryptophan biosynthetic process2.38E-02
176GO:0006071: glycerol metabolic process2.38E-02
177GO:0006289: nucleotide-excision repair2.56E-02
178GO:2000377: regulation of reactive oxygen species metabolic process2.56E-02
179GO:0007017: microtubule-based process2.74E-02
180GO:0019915: lipid storage2.94E-02
181GO:2000022: regulation of jasmonic acid mediated signaling pathway3.13E-02
182GO:0007005: mitochondrion organization3.13E-02
183GO:0006012: galactose metabolic process3.33E-02
184GO:0009693: ethylene biosynthetic process3.33E-02
185GO:0070417: cellular response to cold3.74E-02
186GO:0009958: positive gravitropism4.17E-02
187GO:0006520: cellular amino acid metabolic process4.17E-02
188GO:0010197: polar nucleus fusion4.17E-02
189GO:0046777: protein autophosphorylation4.29E-02
190GO:0042752: regulation of circadian rhythm4.39E-02
191GO:0009416: response to light stimulus4.56E-02
192GO:0008654: phospholipid biosynthetic process4.62E-02
193GO:0009851: auxin biosynthetic process4.62E-02
194GO:0080156: mitochondrial mRNA modification4.85E-02
195GO:0048510: regulation of timing of transition from vegetative to reproductive phase4.85E-02
196GO:0002229: defense response to oomycetes4.85E-02
RankGO TermAdjusted P value
1GO:0033819: lipoyl(octanoyl) transferase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0045436: lycopene beta cyclase activity0.00E+00
4GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity0.00E+00
5GO:0018738: S-formylglutathione hydrolase activity0.00E+00
6GO:0050486: intramolecular transferase activity, transferring hydroxy groups0.00E+00
7GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity0.00E+00
8GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
9GO:0080101: phosphatidyl-N-dimethylethanolamine N-methyltransferase activity0.00E+00
10GO:0046905: phytoene synthase activity0.00E+00
11GO:0004417: hydroxyethylthiazole kinase activity0.00E+00
12GO:0000773: phosphatidyl-N-methylethanolamine N-methyltransferase activity0.00E+00
13GO:0000254: C-4 methylsterol oxidase activity4.93E-07
14GO:0004848: ureidoglycolate hydrolase activity3.33E-05
15GO:0046480: galactolipid galactosyltransferase activity4.70E-04
16GO:0046906: tetrapyrrole binding4.70E-04
17GO:0080079: cellobiose glucosidase activity4.70E-04
18GO:0033984: indole-3-glycerol-phosphate lyase activity4.70E-04
19GO:0015085: calcium ion transmembrane transporter activity4.70E-04
20GO:0016783: sulfurtransferase activity4.70E-04
21GO:0004424: imidazoleglycerol-phosphate dehydratase activity4.70E-04
22GO:0004071: aspartate-ammonia ligase activity4.70E-04
23GO:0004325: ferrochelatase activity4.70E-04
24GO:0051996: squalene synthase activity4.70E-04
25GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity4.70E-04
26GO:0016784: 3-mercaptopyruvate sulfurtransferase activity4.70E-04
27GO:0008080: N-acetyltransferase activity6.93E-04
28GO:0071949: FAD binding8.55E-04
29GO:0048038: quinone binding9.05E-04
30GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity1.01E-03
31GO:0016415: octanoyltransferase activity1.01E-03
32GO:0004766: spermidine synthase activity1.01E-03
33GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.01E-03
34GO:0000064: L-ornithine transmembrane transporter activity1.01E-03
35GO:0004046: aminoacylase activity1.01E-03
36GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.01E-03
37GO:0003862: 3-isopropylmalate dehydrogenase activity1.01E-03
38GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity1.01E-03
39GO:0035241: protein-arginine omega-N monomethyltransferase activity1.01E-03
40GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.01E-03
41GO:0017118: lipoyltransferase activity1.01E-03
42GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity1.01E-03
43GO:0010331: gibberellin binding1.01E-03
44GO:0004180: carboxypeptidase activity1.65E-03
45GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity1.65E-03
46GO:0010277: chlorophyllide a oxygenase [overall] activity1.65E-03
47GO:0046524: sucrose-phosphate synthase activity1.65E-03
48GO:0032947: protein complex scaffold1.65E-03
49GO:0000900: translation repressor activity, nucleic acid binding1.65E-03
50GO:0019003: GDP binding1.65E-03
51GO:0003861: 3-isopropylmalate dehydratase activity1.65E-03
52GO:0003935: GTP cyclohydrolase II activity1.65E-03
53GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity1.65E-03
54GO:0008469: histone-arginine N-methyltransferase activity1.65E-03
55GO:0016491: oxidoreductase activity1.69E-03
56GO:0035529: NADH pyrophosphatase activity2.39E-03
57GO:0004792: thiosulfate sulfurtransferase activity2.39E-03
58GO:0016851: magnesium chelatase activity2.39E-03
59GO:0000339: RNA cap binding2.39E-03
60GO:0009882: blue light photoreceptor activity2.39E-03
61GO:0047627: adenylylsulfatase activity2.39E-03
62GO:0005319: lipid transporter activity3.22E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.22E-03
64GO:0015369: calcium:proton antiporter activity3.22E-03
65GO:0016987: sigma factor activity3.22E-03
66GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor3.22E-03
67GO:0015368: calcium:cation antiporter activity3.22E-03
68GO:0001053: plastid sigma factor activity3.22E-03
69GO:0004834: tryptophan synthase activity3.22E-03
70GO:0004356: glutamate-ammonia ligase activity4.13E-03
71GO:0051537: 2 iron, 2 sulfur cluster binding4.18E-03
72GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity5.11E-03
73GO:0004784: superoxide dismutase activity5.11E-03
74GO:0004144: diacylglycerol O-acyltransferase activity6.17E-03
75GO:0030060: L-malate dehydrogenase activity6.17E-03
76GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups7.15E-03
77GO:0004518: nuclease activity7.26E-03
78GO:0005338: nucleotide-sugar transmembrane transporter activity7.30E-03
79GO:0004427: inorganic diphosphatase activity7.30E-03
80GO:0016621: cinnamoyl-CoA reductase activity7.30E-03
81GO:0019899: enzyme binding7.30E-03
82GO:0008168: methyltransferase activity7.45E-03
83GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity8.49E-03
84GO:0004034: aldose 1-epimerase activity8.49E-03
85GO:0004525: ribonuclease III activity8.49E-03
86GO:0003824: catalytic activity8.53E-03
87GO:0046914: transition metal ion binding9.75E-03
88GO:0005515: protein binding1.04E-02
89GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.20E-02
90GO:0008236: serine-type peptidase activity1.23E-02
91GO:0001055: RNA polymerase II activity1.25E-02
92GO:0016844: strictosidine synthase activity1.25E-02
93GO:0008047: enzyme activator activity1.39E-02
94GO:0004713: protein tyrosine kinase activity1.39E-02
95GO:0046872: metal ion binding1.40E-02
96GO:0004222: metalloendopeptidase activity1.42E-02
97GO:0016787: hydrolase activity1.46E-02
98GO:0004860: protein kinase inhibitor activity1.54E-02
99GO:0004129: cytochrome-c oxidase activity1.54E-02
100GO:0042803: protein homodimerization activity1.54E-02
101GO:0001054: RNA polymerase I activity1.54E-02
102GO:0008378: galactosyltransferase activity1.70E-02
103GO:0001056: RNA polymerase III activity1.70E-02
104GO:0015266: protein channel activity1.86E-02
105GO:0005315: inorganic phosphate transmembrane transporter activity1.86E-02
106GO:0031072: heat shock protein binding1.86E-02
107GO:0005506: iron ion binding1.87E-02
108GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.03E-02
109GO:0004185: serine-type carboxypeptidase activity2.12E-02
110GO:0042802: identical protein binding2.36E-02
111GO:0003887: DNA-directed DNA polymerase activity2.38E-02
112GO:0051536: iron-sulfur cluster binding2.56E-02
113GO:0051287: NAD binding2.57E-02
114GO:0003899: DNA-directed 5'-3' RNA polymerase activity2.86E-02
115GO:0004176: ATP-dependent peptidase activity2.94E-02
116GO:0008514: organic anion transmembrane transporter activity3.54E-02
117GO:0022857: transmembrane transporter activity3.82E-02
118GO:0016853: isomerase activity4.39E-02
119GO:0050662: coenzyme binding4.39E-02
120GO:0004386: helicase activity4.42E-02
RankGO TermAdjusted P value
1GO:0030427: site of polarized growth0.00E+00
2GO:0009507: chloroplast4.60E-28
3GO:0009535: chloroplast thylakoid membrane1.27E-09
4GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.02E-06
5GO:0009536: plastid1.40E-06
6GO:0009570: chloroplast stroma1.77E-04
7GO:0043190: ATP-binding cassette (ABC) transporter complex4.70E-04
8GO:0000152: nuclear ubiquitin ligase complex4.70E-04
9GO:0005845: mRNA cap binding complex4.70E-04
10GO:0009941: chloroplast envelope7.19E-04
11GO:0031969: chloroplast membrane7.26E-04
12GO:0005846: nuclear cap binding complex1.01E-03
13GO:0016604: nuclear body1.01E-03
14GO:0016605: PML body1.65E-03
15GO:0009707: chloroplast outer membrane2.02E-03
16GO:0042646: plastid nucleoid2.39E-03
17GO:0042651: thylakoid membrane3.04E-03
18GO:0030286: dynein complex3.22E-03
19GO:0009517: PSII associated light-harvesting complex II3.22E-03
20GO:0055035: plastid thylakoid membrane4.13E-03
21GO:0009840: chloroplastic endopeptidase Clp complex6.17E-03
22GO:0000123: histone acetyltransferase complex7.30E-03
23GO:0031359: integral component of chloroplast outer membrane7.30E-03
24GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)8.49E-03
25GO:0045273: respiratory chain complex II8.49E-03
26GO:0009706: chloroplast inner membrane8.69E-03
27GO:0009295: nucleoid8.76E-03
28GO:0005779: integral component of peroxisomal membrane9.75E-03
29GO:0005811: lipid particle9.75E-03
30GO:0046930: pore complex9.75E-03
31GO:0042644: chloroplast nucleoid1.11E-02
32GO:0005623: cell1.20E-02
33GO:0005773: vacuole1.22E-02
34GO:0009508: plastid chromosome1.86E-02
35GO:0005764: lysosome2.03E-02
36GO:0000419: DNA-directed RNA polymerase V complex2.38E-02
37GO:0043234: protein complex2.38E-02
38GO:0005875: microtubule associated complex2.38E-02
39GO:0015935: small ribosomal subunit2.94E-02
40GO:0005744: mitochondrial inner membrane presequence translocase complex3.54E-02
41GO:0005789: endoplasmic reticulum membrane4.22E-02
42GO:0009523: photosystem II4.62E-02
<
Gene type



Gene DE type