Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G44608

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018023: peptidyl-lysine trimethylation0.00E+00
2GO:0071474: cellular hyperosmotic response0.00E+00
3GO:1905421: regulation of plant organ morphogenesis0.00E+00
4GO:0002184: cytoplasmic translational termination0.00E+00
5GO:0030155: regulation of cell adhesion0.00E+00
6GO:0019323: pentose catabolic process0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0016553: base conversion or substitution editing0.00E+00
9GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
10GO:0090279: regulation of calcium ion import0.00E+00
11GO:0015717: triose phosphate transport0.00E+00
12GO:0009735: response to cytokinin4.77E-12
13GO:0015979: photosynthesis5.41E-12
14GO:0032544: plastid translation2.63E-11
15GO:0006412: translation2.81E-11
16GO:0009773: photosynthetic electron transport in photosystem I3.12E-08
17GO:0042254: ribosome biogenesis4.47E-08
18GO:0009409: response to cold9.72E-08
19GO:0030388: fructose 1,6-bisphosphate metabolic process7.32E-06
20GO:0006000: fructose metabolic process2.54E-05
21GO:0010206: photosystem II repair3.25E-05
22GO:0010021: amylopectin biosynthetic process9.74E-05
23GO:0019464: glycine decarboxylation via glycine cleavage system9.74E-05
24GO:0010207: photosystem II assembly1.28E-04
25GO:0010027: thylakoid membrane organization1.30E-04
26GO:0010190: cytochrome b6f complex assembly2.16E-04
27GO:0009768: photosynthesis, light harvesting in photosystem I2.37E-04
28GO:0009658: chloroplast organization2.92E-04
29GO:0009645: response to low light intensity stimulus3.76E-04
30GO:0080093: regulation of photorespiration4.05E-04
31GO:0031998: regulation of fatty acid beta-oxidation4.05E-04
32GO:0000023: maltose metabolic process4.05E-04
33GO:0000025: maltose catabolic process4.05E-04
34GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.05E-04
35GO:0005980: glycogen catabolic process4.05E-04
36GO:0043489: RNA stabilization4.05E-04
37GO:0044262: cellular carbohydrate metabolic process4.05E-04
38GO:0009644: response to high light intensity5.22E-04
39GO:0006002: fructose 6-phosphate metabolic process5.75E-04
40GO:0010205: photoinhibition8.13E-04
41GO:0031648: protein destabilization8.76E-04
42GO:0010270: photosystem II oxygen evolving complex assembly8.76E-04
43GO:0051262: protein tetramerization8.76E-04
44GO:0035304: regulation of protein dephosphorylation8.76E-04
45GO:0005976: polysaccharide metabolic process8.76E-04
46GO:1904961: quiescent center organization8.76E-04
47GO:0018026: peptidyl-lysine monomethylation8.76E-04
48GO:0043085: positive regulation of catalytic activity1.09E-03
49GO:0005983: starch catabolic process1.24E-03
50GO:0015995: chlorophyll biosynthetic process1.33E-03
51GO:0006094: gluconeogenesis1.41E-03
52GO:0005986: sucrose biosynthetic process1.41E-03
53GO:0016050: vesicle organization1.42E-03
54GO:0048281: inflorescence morphogenesis1.42E-03
55GO:0071367: cellular response to brassinosteroid stimulus1.42E-03
56GO:0006518: peptide metabolic process1.42E-03
57GO:0080055: low-affinity nitrate transport1.42E-03
58GO:0035436: triose phosphate transmembrane transport1.42E-03
59GO:0006979: response to oxidative stress1.44E-03
60GO:0018298: protein-chromophore linkage1.52E-03
61GO:0009266: response to temperature stimulus1.59E-03
62GO:0009631: cold acclimation1.83E-03
63GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly2.06E-03
64GO:0051085: chaperone mediated protein folding requiring cofactor2.06E-03
65GO:0006241: CTP biosynthetic process2.06E-03
66GO:0009052: pentose-phosphate shunt, non-oxidative branch2.06E-03
67GO:0010306: rhamnogalacturonan II biosynthetic process2.06E-03
68GO:0010731: protein glutathionylation2.06E-03
69GO:0006165: nucleoside diphosphate phosphorylation2.06E-03
70GO:0006228: UTP biosynthetic process2.06E-03
71GO:0010148: transpiration2.06E-03
72GO:0034599: cellular response to oxidative stress2.17E-03
73GO:0006289: nucleotide-excision repair2.20E-03
74GO:0045454: cell redox homeostasis2.64E-03
75GO:0010037: response to carbon dioxide2.76E-03
76GO:0006808: regulation of nitrogen utilization2.76E-03
77GO:0015976: carbon utilization2.76E-03
78GO:0010023: proanthocyanidin biosynthetic process2.76E-03
79GO:0009765: photosynthesis, light harvesting2.76E-03
80GO:0006109: regulation of carbohydrate metabolic process2.76E-03
81GO:0006183: GTP biosynthetic process2.76E-03
82GO:0045727: positive regulation of translation2.76E-03
83GO:2000122: negative regulation of stomatal complex development2.76E-03
84GO:0010600: regulation of auxin biosynthetic process2.76E-03
85GO:0006546: glycine catabolic process2.76E-03
86GO:0006552: leucine catabolic process2.76E-03
87GO:0015713: phosphoglycerate transport2.76E-03
88GO:0010017: red or far-red light signaling pathway2.93E-03
89GO:0006097: glyoxylate cycle3.54E-03
90GO:0006461: protein complex assembly3.54E-03
91GO:0006544: glycine metabolic process3.54E-03
92GO:0046686: response to cadmium ion4.08E-03
93GO:0042742: defense response to bacterium4.28E-03
94GO:0006563: L-serine metabolic process4.38E-03
95GO:0042549: photosystem II stabilization4.38E-03
96GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway4.38E-03
97GO:0000470: maturation of LSU-rRNA4.38E-03
98GO:0006828: manganese ion transport4.38E-03
99GO:0006662: glycerol ether metabolic process4.38E-03
100GO:0009643: photosynthetic acclimation4.38E-03
101GO:0009635: response to herbicide4.38E-03
102GO:0019252: starch biosynthetic process5.06E-03
103GO:0009955: adaxial/abaxial pattern specification5.27E-03
104GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.27E-03
105GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)5.27E-03
106GO:0042026: protein refolding5.27E-03
107GO:1901259: chloroplast rRNA processing5.27E-03
108GO:0010103: stomatal complex morphogenesis6.23E-03
109GO:0010161: red light signaling pathway6.23E-03
110GO:0070370: cellular heat acclimation6.23E-03
111GO:0010196: nonphotochemical quenching6.23E-03
112GO:0009769: photosynthesis, light harvesting in photosystem II6.23E-03
113GO:0022904: respiratory electron transport chain6.23E-03
114GO:0010928: regulation of auxin mediated signaling pathway7.25E-03
115GO:0030091: protein repair7.25E-03
116GO:0005978: glycogen biosynthetic process7.25E-03
117GO:0009704: de-etiolation7.25E-03
118GO:0017004: cytochrome complex assembly8.32E-03
119GO:0001558: regulation of cell growth8.32E-03
120GO:0009657: plastid organization8.32E-03
121GO:0006526: arginine biosynthetic process8.32E-03
122GO:0055114: oxidation-reduction process8.62E-03
123GO:0009627: systemic acquired resistance8.77E-03
124GO:0051865: protein autoubiquitination9.45E-03
125GO:0006783: heme biosynthetic process9.45E-03
126GO:0006810: transport9.78E-03
127GO:0009817: defense response to fungus, incompatible interaction1.03E-02
128GO:0005982: starch metabolic process1.06E-02
129GO:0035999: tetrahydrofolate interconversion1.06E-02
130GO:0042761: very long-chain fatty acid biosynthetic process1.06E-02
131GO:0043069: negative regulation of programmed cell death1.19E-02
132GO:0048829: root cap development1.19E-02
133GO:0031627: telomeric loop formation1.19E-02
134GO:0010119: regulation of stomatal movement1.19E-02
135GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
136GO:0009750: response to fructose1.31E-02
137GO:0016485: protein processing1.31E-02
138GO:0006816: calcium ion transport1.31E-02
139GO:0019684: photosynthesis, light reaction1.31E-02
140GO:0007623: circadian rhythm1.31E-02
141GO:0009073: aromatic amino acid family biosynthetic process1.31E-02
142GO:0006415: translational termination1.31E-02
143GO:0045037: protein import into chloroplast stroma1.45E-02
144GO:0009718: anthocyanin-containing compound biosynthetic process1.58E-02
145GO:0010628: positive regulation of gene expression1.58E-02
146GO:0010102: lateral root morphogenesis1.58E-02
147GO:0006108: malate metabolic process1.58E-02
148GO:0008152: metabolic process1.62E-02
149GO:0019253: reductive pentose-phosphate cycle1.73E-02
150GO:0006302: double-strand break repair1.73E-02
151GO:0010020: chloroplast fission1.73E-02
152GO:0005985: sucrose metabolic process1.87E-02
153GO:0010025: wax biosynthetic process2.02E-02
154GO:0006636: unsaturated fatty acid biosynthetic process2.02E-02
155GO:0009944: polarity specification of adaxial/abaxial axis2.18E-02
156GO:0000027: ribosomal large subunit assembly2.18E-02
157GO:0009585: red, far-red light phototransduction2.28E-02
158GO:0051302: regulation of cell division2.33E-02
159GO:0006418: tRNA aminoacylation for protein translation2.33E-02
160GO:0007017: microtubule-based process2.33E-02
161GO:0019915: lipid storage2.50E-02
162GO:0061077: chaperone-mediated protein folding2.50E-02
163GO:0051321: meiotic cell cycle2.50E-02
164GO:0016114: terpenoid biosynthetic process2.50E-02
165GO:0007005: mitochondrion organization2.66E-02
166GO:0030245: cellulose catabolic process2.66E-02
167GO:2000022: regulation of jasmonic acid mediated signaling pathway2.66E-02
168GO:0001944: vasculature development2.83E-02
169GO:0009686: gibberellin biosynthetic process2.83E-02
170GO:0009411: response to UV2.83E-02
171GO:0006284: base-excision repair3.01E-02
172GO:0009624: response to nematode3.24E-02
173GO:0048868: pollen tube development3.55E-02
174GO:0006520: cellular amino acid metabolic process3.55E-02
175GO:0015986: ATP synthesis coupled proton transport3.74E-02
176GO:0006814: sodium ion transport3.74E-02
177GO:0009646: response to absence of light3.74E-02
178GO:0071554: cell wall organization or biogenesis4.12E-02
179GO:0000302: response to reactive oxygen species4.12E-02
180GO:0030163: protein catabolic process4.52E-02
181GO:0009790: embryo development4.72E-02
182GO:0006310: DNA recombination4.73E-02
183GO:0006629: lipid metabolic process4.82E-02
RankGO TermAdjusted P value
1GO:0009899: ent-kaurene synthase activity0.00E+00
2GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
3GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
4GO:0051738: xanthophyll binding0.00E+00
5GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
6GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
7GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
8GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
9GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
10GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
11GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
12GO:0048039: ubiquinone binding0.00E+00
13GO:0004822: isoleucine-tRNA ligase activity0.00E+00
14GO:0019843: rRNA binding2.13E-18
15GO:0003735: structural constituent of ribosome9.56E-15
16GO:0008266: poly(U) RNA binding4.87E-06
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity7.32E-06
18GO:0005528: FK506 binding1.02E-05
19GO:0047372: acylglycerol lipase activity7.04E-05
20GO:0016168: chlorophyll binding1.43E-04
21GO:0031409: pigment binding1.78E-04
22GO:0051920: peroxiredoxin activity2.91E-04
23GO:0004602: glutathione peroxidase activity2.91E-04
24GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity4.05E-04
25GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity4.05E-04
26GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity4.05E-04
27GO:0005227: calcium activated cation channel activity4.05E-04
28GO:0008184: glycogen phosphorylase activity4.05E-04
29GO:0004856: xylulokinase activity4.05E-04
30GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.05E-04
31GO:0004134: 4-alpha-glucanotransferase activity4.05E-04
32GO:0080132: fatty acid alpha-hydroxylase activity4.05E-04
33GO:0004645: phosphorylase activity4.05E-04
34GO:0010242: oxygen evolving activity4.05E-04
35GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity4.05E-04
36GO:0004853: uroporphyrinogen decarboxylase activity4.05E-04
37GO:0045485: omega-6 fatty acid desaturase activity4.05E-04
38GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.05E-04
39GO:0016209: antioxidant activity4.71E-04
40GO:0003755: peptidyl-prolyl cis-trans isomerase activity5.87E-04
41GO:0008967: phosphoglycolate phosphatase activity8.76E-04
42GO:0010297: heteropolysaccharide binding8.76E-04
43GO:0033201: alpha-1,4-glucan synthase activity8.76E-04
44GO:0004750: ribulose-phosphate 3-epimerase activity8.76E-04
45GO:0018708: thiol S-methyltransferase activity8.76E-04
46GO:0003844: 1,4-alpha-glucan branching enzyme activity8.76E-04
47GO:0008047: enzyme activator activity9.46E-04
48GO:0031072: heat shock protein binding1.41E-03
49GO:0030267: glyoxylate reductase (NADP) activity1.42E-03
50GO:0071917: triose-phosphate transmembrane transporter activity1.42E-03
51GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.42E-03
52GO:0080054: low-affinity nitrate transmembrane transporter activity1.42E-03
53GO:0043169: cation binding1.42E-03
54GO:0004373: glycogen (starch) synthase activity1.42E-03
55GO:0017150: tRNA dihydrouridine synthase activity1.42E-03
56GO:0002161: aminoacyl-tRNA editing activity1.42E-03
57GO:0004148: dihydrolipoyl dehydrogenase activity1.42E-03
58GO:0017108: 5'-flap endonuclease activity1.42E-03
59GO:0045174: glutathione dehydrogenase (ascorbate) activity1.42E-03
60GO:0004222: metalloendopeptidase activity1.72E-03
61GO:0004550: nucleoside diphosphate kinase activity2.06E-03
62GO:0043023: ribosomal large subunit binding2.06E-03
63GO:0004375: glycine dehydrogenase (decarboxylating) activity2.06E-03
64GO:0019201: nucleotide kinase activity2.06E-03
65GO:0004252: serine-type endopeptidase activity2.06E-03
66GO:0016149: translation release factor activity, codon specific2.06E-03
67GO:0016851: magnesium chelatase activity2.06E-03
68GO:0016491: oxidoreductase activity2.74E-03
69GO:0015120: phosphoglycerate transmembrane transporter activity2.76E-03
70GO:0016279: protein-lysine N-methyltransferase activity2.76E-03
71GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.76E-03
72GO:0019104: DNA N-glycosylase activity2.76E-03
73GO:0009011: starch synthase activity2.76E-03
74GO:0019199: transmembrane receptor protein kinase activity2.76E-03
75GO:0042277: peptide binding2.76E-03
76GO:0004372: glycine hydroxymethyltransferase activity3.54E-03
77GO:0016773: phosphotransferase activity, alcohol group as acceptor3.54E-03
78GO:0047134: protein-disulfide reductase activity3.76E-03
79GO:0016615: malate dehydrogenase activity4.38E-03
80GO:2001070: starch binding4.38E-03
81GO:0004130: cytochrome-c peroxidase activity4.38E-03
82GO:0004791: thioredoxin-disulfide reductase activity4.71E-03
83GO:0050662: coenzyme binding4.71E-03
84GO:0033743: peptide-methionine (R)-S-oxide reductase activity5.27E-03
85GO:0004017: adenylate kinase activity5.27E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity5.27E-03
87GO:0030060: L-malate dehydrogenase activity5.27E-03
88GO:0005261: cation channel activity5.27E-03
89GO:0048038: quinone binding5.42E-03
90GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor6.17E-03
91GO:0051082: unfolded protein binding6.52E-03
92GO:0004033: aldo-keto reductase (NADP) activity7.25E-03
93GO:0015078: hydrogen ion transmembrane transporter activity8.32E-03
94GO:0003747: translation release factor activity9.45E-03
95GO:0008236: serine-type peptidase activity9.75E-03
96GO:0005384: manganese ion transmembrane transporter activity1.06E-02
97GO:0044183: protein binding involved in protein folding1.31E-02
98GO:0003691: double-stranded telomeric DNA binding1.31E-02
99GO:0008378: galactosyltransferase activity1.45E-02
100GO:0000049: tRNA binding1.45E-02
101GO:0003824: catalytic activity1.49E-02
102GO:0005315: inorganic phosphate transmembrane transporter activity1.58E-02
103GO:0004089: carbonate dehydratase activity1.58E-02
104GO:0015095: magnesium ion transmembrane transporter activity1.58E-02
105GO:0004565: beta-galactosidase activity1.58E-02
106GO:0004857: enzyme inhibitor activity2.18E-02
107GO:0001046: core promoter sequence-specific DNA binding2.18E-02
108GO:0004601: peroxidase activity2.28E-02
109GO:0008408: 3'-5' exonuclease activity2.50E-02
110GO:0022891: substrate-specific transmembrane transporter activity2.83E-02
111GO:0008810: cellulase activity2.83E-02
112GO:0008514: organic anion transmembrane transporter activity3.01E-02
113GO:0003756: protein disulfide isomerase activity3.01E-02
114GO:0004812: aminoacyl-tRNA ligase activity3.19E-02
115GO:0015035: protein disulfide oxidoreductase activity3.34E-02
116GO:0004518: nuclease activity4.32E-02
117GO:0030170: pyridoxal phosphate binding4.49E-02
118GO:0000156: phosphorelay response regulator activity4.52E-02
119GO:0003684: damaged DNA binding4.73E-02
120GO:0005200: structural constituent of cytoskeleton4.93E-02
121GO:0008237: metallopeptidase activity4.93E-02
RankGO TermAdjusted P value
1GO:0044391: ribosomal subunit0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
5GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
6GO:0033557: Slx1-Slx4 complex0.00E+00
7GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
8GO:0009507: chloroplast5.65E-83
9GO:0009570: chloroplast stroma1.06E-60
10GO:0009941: chloroplast envelope3.97E-57
11GO:0009535: chloroplast thylakoid membrane4.97E-48
12GO:0009534: chloroplast thylakoid2.20E-46
13GO:0009579: thylakoid3.16E-37
14GO:0009543: chloroplast thylakoid lumen2.34E-15
15GO:0005840: ribosome1.93E-14
16GO:0010287: plastoglobule4.76E-14
17GO:0031977: thylakoid lumen2.18E-10
18GO:0010319: stromule7.94E-09
19GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.18E-07
20GO:0009706: chloroplast inner membrane2.12E-06
21GO:0016020: membrane2.73E-06
22GO:0030095: chloroplast photosystem II4.87E-06
23GO:0048046: apoplast7.84E-06
24GO:0009533: chloroplast stromal thylakoid1.11E-05
25GO:0009523: photosystem II5.72E-05
26GO:0009295: nucleoid1.05E-04
27GO:0009508: plastid chromosome1.06E-04
28GO:0055035: plastid thylakoid membrane1.51E-04
29GO:0030076: light-harvesting complex1.52E-04
30GO:0009654: photosystem II oxygen evolving complex2.37E-04
31GO:0009782: photosystem I antenna complex4.05E-04
32GO:0000791: euchromatin4.05E-04
33GO:0009501: amyloplast4.71E-04
34GO:0009538: photosystem I reaction center4.71E-04
35GO:0009522: photosystem I5.73E-04
36GO:0019898: extrinsic component of membrane6.28E-04
37GO:0009536: plastid7.85E-04
38GO:0030093: chloroplast photosystem I8.76E-04
39GO:0030870: Mre11 complex8.76E-04
40GO:0000311: plastid large ribosomal subunit1.24E-03
41GO:0010007: magnesium chelatase complex1.42E-03
42GO:0015934: large ribosomal subunit1.83E-03
43GO:0005960: glycine cleavage complex2.06E-03
44GO:0042651: thylakoid membrane2.43E-03
45GO:0015935: small ribosomal subunit2.67E-03
46GO:0009517: PSII associated light-harvesting complex II2.76E-03
47GO:0000795: synaptonemal complex3.54E-03
48GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)4.38E-03
49GO:0009840: chloroplastic endopeptidase Clp complex5.27E-03
50GO:0031305: integral component of mitochondrial inner membrane7.25E-03
51GO:0031969: chloroplast membrane7.77E-03
52GO:0000783: nuclear telomere cap complex8.32E-03
53GO:0022625: cytosolic large ribosomal subunit8.39E-03
54GO:0005763: mitochondrial small ribosomal subunit9.45E-03
55GO:0042644: chloroplast nucleoid9.45E-03
56GO:0045298: tubulin complex9.45E-03
57GO:0005740: mitochondrial envelope1.19E-02
58GO:0000312: plastid small ribosomal subunit1.73E-02
59GO:0009532: plastid stroma2.50E-02
60GO:0022626: cytosolic ribosome3.08E-02
61GO:0005623: cell4.16E-02
62GO:0000785: chromatin4.32E-02
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Gene type



Gene DE type