Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G44575

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0016553: base conversion or substitution editing0.00E+00
2GO:0061635: regulation of protein complex stability0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0015717: triose phosphate transport0.00E+00
6GO:0016118: carotenoid catabolic process0.00E+00
7GO:0000023: maltose metabolic process0.00E+00
8GO:1905421: regulation of plant organ morphogenesis0.00E+00
9GO:0002184: cytoplasmic translational termination0.00E+00
10GO:0030155: regulation of cell adhesion0.00E+00
11GO:0019323: pentose catabolic process0.00E+00
12GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
13GO:0015979: photosynthesis4.71E-20
14GO:0006412: translation6.48E-15
15GO:0009735: response to cytokinin1.62E-14
16GO:0032544: plastid translation3.18E-14
17GO:0009768: photosynthesis, light harvesting in photosystem I2.87E-11
18GO:0009409: response to cold9.14E-11
19GO:0042254: ribosome biogenesis4.15E-10
20GO:0019464: glycine decarboxylation via glycine cleavage system1.38E-09
21GO:0018298: protein-chromophore linkage8.76E-09
22GO:0010206: photosystem II repair2.64E-07
23GO:0009773: photosynthetic electron transport in photosystem I8.54E-07
24GO:0043085: positive regulation of catalytic activity8.54E-07
25GO:0010207: photosystem II assembly2.15E-06
26GO:0030388: fructose 1,6-bisphosphate metabolic process4.48E-06
27GO:0042742: defense response to bacterium5.39E-06
28GO:0010196: nonphotochemical quenching5.87E-06
29GO:0009645: response to low light intensity stimulus5.87E-06
30GO:0045454: cell redox homeostasis6.19E-06
31GO:0005978: glycogen biosynthetic process8.86E-06
32GO:0009658: chloroplast organization1.57E-05
33GO:0006000: fructose metabolic process1.59E-05
34GO:0019252: starch biosynthetic process2.77E-05
35GO:0018119: peptidyl-cysteine S-nitrosylation3.94E-05
36GO:0005983: starch catabolic process4.93E-05
37GO:0006094: gluconeogenesis6.06E-05
38GO:0006546: glycine catabolic process6.35E-05
39GO:0010021: amylopectin biosynthetic process6.35E-05
40GO:0006109: regulation of carbohydrate metabolic process6.35E-05
41GO:0045727: positive regulation of translation6.35E-05
42GO:0010027: thylakoid membrane organization6.55E-05
43GO:0015995: chlorophyll biosynthetic process8.90E-05
44GO:0034599: cellular response to oxidative stress1.77E-04
45GO:0009644: response to high light intensity2.88E-04
46GO:0043489: RNA stabilization3.14E-04
47GO:0044262: cellular carbohydrate metabolic process3.14E-04
48GO:0080093: regulation of photorespiration3.14E-04
49GO:0031998: regulation of fatty acid beta-oxidation3.14E-04
50GO:1902458: positive regulation of stomatal opening3.14E-04
51GO:0000025: maltose catabolic process3.14E-04
52GO:0006662: glycerol ether metabolic process3.22E-04
53GO:0006002: fructose 6-phosphate metabolic process3.98E-04
54GO:0010205: photoinhibition5.66E-04
55GO:0016124: xanthophyll catabolic process6.87E-04
56GO:0019388: galactose catabolic process6.87E-04
57GO:0005976: polysaccharide metabolic process6.87E-04
58GO:0007154: cell communication6.87E-04
59GO:0016121: carotene catabolic process6.87E-04
60GO:1903426: regulation of reactive oxygen species biosynthetic process6.87E-04
61GO:0010270: photosystem II oxygen evolving complex assembly6.87E-04
62GO:0035304: regulation of protein dephosphorylation6.87E-04
63GO:0009629: response to gravity6.87E-04
64GO:0045037: protein import into chloroplast stroma8.70E-04
65GO:0009817: defense response to fungus, incompatible interaction9.50E-04
66GO:0009767: photosynthetic electron transport chain9.84E-04
67GO:0005986: sucrose biosynthetic process9.84E-04
68GO:0006518: peptide metabolic process1.11E-03
69GO:0010581: regulation of starch biosynthetic process1.11E-03
70GO:0035436: triose phosphate transmembrane transport1.11E-03
71GO:0019253: reductive pentose-phosphate cycle1.11E-03
72GO:0090153: regulation of sphingolipid biosynthetic process1.11E-03
73GO:0016050: vesicle organization1.11E-03
74GO:0048281: inflorescence morphogenesis1.11E-03
75GO:0006289: nucleotide-excision repair1.52E-03
76GO:0010731: protein glutathionylation1.60E-03
77GO:0006424: glutamyl-tRNA aminoacylation1.60E-03
78GO:0009590: detection of gravity1.60E-03
79GO:0006165: nucleoside diphosphate phosphorylation1.60E-03
80GO:0006228: UTP biosynthetic process1.60E-03
81GO:0010148: transpiration1.60E-03
82GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.60E-03
83GO:0071484: cellular response to light intensity1.60E-03
84GO:0051085: chaperone mediated protein folding requiring cofactor1.60E-03
85GO:0009052: pentose-phosphate shunt, non-oxidative branch1.60E-03
86GO:0006241: CTP biosynthetic process1.60E-03
87GO:0046686: response to cadmium ion1.64E-03
88GO:0055114: oxidation-reduction process1.77E-03
89GO:0061077: chaperone-mediated protein folding1.84E-03
90GO:0006979: response to oxidative stress1.89E-03
91GO:0006552: leucine catabolic process2.14E-03
92GO:0015713: phosphoglycerate transport2.14E-03
93GO:0010037: response to carbon dioxide2.14E-03
94GO:0015976: carbon utilization2.14E-03
95GO:0009765: photosynthesis, light harvesting2.14E-03
96GO:0006183: GTP biosynthetic process2.14E-03
97GO:2000122: negative regulation of stomatal complex development2.14E-03
98GO:0032543: mitochondrial translation2.74E-03
99GO:0006544: glycine metabolic process2.74E-03
100GO:0045038: protein import into chloroplast thylakoid membrane2.74E-03
101GO:0006097: glyoxylate cycle2.74E-03
102GO:0006461: protein complex assembly2.74E-03
103GO:0006828: manganese ion transport3.38E-03
104GO:0009643: photosynthetic acclimation3.38E-03
105GO:0009635: response to herbicide3.38E-03
106GO:0006563: L-serine metabolic process3.38E-03
107GO:0042549: photosystem II stabilization3.38E-03
108GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.38E-03
109GO:0000470: maturation of LSU-rRNA3.38E-03
110GO:0009624: response to nematode4.03E-03
111GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.06E-03
112GO:0042026: protein refolding4.06E-03
113GO:1901259: chloroplast rRNA processing4.06E-03
114GO:0009955: adaxial/abaxial pattern specification4.06E-03
115GO:0070370: cellular heat acclimation4.80E-03
116GO:0022904: respiratory electron transport chain4.80E-03
117GO:0009769: photosynthesis, light harvesting in photosystem II4.80E-03
118GO:0010103: stomatal complex morphogenesis4.80E-03
119GO:2000070: regulation of response to water deprivation5.57E-03
120GO:0007186: G-protein coupled receptor signaling pathway6.39E-03
121GO:0009657: plastid organization6.39E-03
122GO:0015996: chlorophyll catabolic process6.39E-03
123GO:0019430: removal of superoxide radicals6.39E-03
124GO:0001558: regulation of cell growth6.39E-03
125GO:0006783: heme biosynthetic process7.24E-03
126GO:0006098: pentose-phosphate shunt7.24E-03
127GO:0010218: response to far red light7.74E-03
128GO:0007623: circadian rhythm8.09E-03
129GO:0010119: regulation of stomatal movement8.12E-03
130GO:0010380: regulation of chlorophyll biosynthetic process8.14E-03
131GO:0005982: starch metabolic process8.14E-03
132GO:0035999: tetrahydrofolate interconversion8.14E-03
133GO:0009637: response to blue light8.90E-03
134GO:0009853: photorespiration8.90E-03
135GO:0006782: protoporphyrinogen IX biosynthetic process9.07E-03
136GO:0008152: metabolic process9.16E-03
137GO:0000272: polysaccharide catabolic process1.00E-02
138GO:0006415: translational termination1.00E-02
139GO:0009750: response to fructose1.00E-02
140GO:0016485: protein processing1.00E-02
141GO:0019684: photosynthesis, light reaction1.00E-02
142GO:0006816: calcium ion transport1.00E-02
143GO:0010114: response to red light1.15E-02
144GO:0006108: malate metabolic process1.21E-02
145GO:0006006: glucose metabolic process1.21E-02
146GO:0006810: transport1.25E-02
147GO:0010020: chloroplast fission1.32E-02
148GO:0006302: double-strand break repair1.32E-02
149GO:0005975: carbohydrate metabolic process1.34E-02
150GO:0005985: sucrose metabolic process1.43E-02
151GO:0006636: unsaturated fatty acid biosynthetic process1.54E-02
152GO:0006364: rRNA processing1.55E-02
153GO:0000027: ribosomal large subunit assembly1.66E-02
154GO:0009944: polarity specification of adaxial/abaxial axis1.66E-02
155GO:0007017: microtubule-based process1.78E-02
156GO:0051302: regulation of cell division1.78E-02
157GO:0006418: tRNA aminoacylation for protein translation1.78E-02
158GO:0043086: negative regulation of catalytic activity1.84E-02
159GO:0006096: glycolytic process1.84E-02
160GO:0009416: response to light stimulus1.88E-02
161GO:0051321: meiotic cell cycle1.91E-02
162GO:0016114: terpenoid biosynthetic process1.91E-02
163GO:0035428: hexose transmembrane transport2.03E-02
164GO:0007005: mitochondrion organization2.03E-02
165GO:0009411: response to UV2.16E-02
166GO:0001944: vasculature development2.16E-02
167GO:0006284: base-excision repair2.29E-02
168GO:0042631: cellular response to water deprivation2.57E-02
169GO:0010182: sugar mediated signaling pathway2.71E-02
170GO:0048868: pollen tube development2.71E-02
171GO:0046323: glucose import2.71E-02
172GO:0015986: ATP synthesis coupled proton transport2.85E-02
173GO:0006814: sodium ion transport2.85E-02
174GO:0009646: response to absence of light2.85E-02
175GO:0000302: response to reactive oxygen species3.15E-02
176GO:0042744: hydrogen peroxide catabolic process3.16E-02
177GO:0009790: embryo development3.24E-02
178GO:0030163: protein catabolic process3.45E-02
179GO:0009627: systemic acquired resistance4.42E-02
180GO:0016311: dephosphorylation4.76E-02
181GO:0008219: cell death4.93E-02
182GO:0048481: plant ovule development4.93E-02
183GO:0006508: proteolysis4.95E-02
RankGO TermAdjusted P value
1GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
2GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
3GO:0048039: ubiquinone binding0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0046408: chlorophyll synthetase activity0.00E+00
6GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
7GO:0030504: inorganic diphosphate transmembrane transporter activity0.00E+00
8GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
9GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
10GO:0005363: maltose transmembrane transporter activity0.00E+00
11GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
12GO:0019843: rRNA binding9.08E-25
13GO:0003735: structural constituent of ribosome8.69E-19
14GO:0008266: poly(U) RNA binding4.57E-12
15GO:0031409: pigment binding1.21E-11
16GO:0016168: chlorophyll binding3.92E-09
17GO:0004375: glycine dehydrogenase (decarboxylating) activity1.66E-07
18GO:0008047: enzyme activator activity5.97E-07
19GO:0051920: peroxiredoxin activity3.66E-06
20GO:0010297: heteropolysaccharide binding4.48E-06
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity4.48E-06
22GO:0005528: FK506 binding4.59E-06
23GO:0016209: antioxidant activity8.86E-06
24GO:0004324: ferredoxin-NADP+ reductase activity1.59E-05
25GO:0004791: thioredoxin-disulfide reductase activity2.39E-05
26GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.12E-05
27GO:0003959: NADPH dehydrogenase activity1.00E-04
28GO:0047134: protein-disulfide reductase activity2.61E-04
29GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.14E-04
30GO:0010242: oxygen evolving activity3.14E-04
31GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.14E-04
32GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.14E-04
33GO:0008158: hedgehog receptor activity3.14E-04
34GO:0004853: uroporphyrinogen decarboxylase activity3.14E-04
35GO:0045485: omega-6 fatty acid desaturase activity3.14E-04
36GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.14E-04
37GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.14E-04
38GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity3.14E-04
39GO:0004856: xylulokinase activity3.14E-04
40GO:0009496: plastoquinol--plastocyanin reductase activity3.14E-04
41GO:0004134: 4-alpha-glucanotransferase activity3.14E-04
42GO:0003755: peptidyl-prolyl cis-trans isomerase activity3.26E-04
43GO:0050662: coenzyme binding3.54E-04
44GO:0004614: phosphoglucomutase activity6.87E-04
45GO:0008967: phosphoglycolate phosphatase activity6.87E-04
46GO:0004618: phosphoglycerate kinase activity6.87E-04
47GO:0033201: alpha-1,4-glucan synthase activity6.87E-04
48GO:0004750: ribulose-phosphate 3-epimerase activity6.87E-04
49GO:0003844: 1,4-alpha-glucan branching enzyme activity6.87E-04
50GO:0031072: heat shock protein binding9.84E-04
51GO:0004222: metalloendopeptidase activity1.07E-03
52GO:0016491: oxidoreductase activity1.10E-03
53GO:0002161: aminoacyl-tRNA editing activity1.11E-03
54GO:0004148: dihydrolipoyl dehydrogenase activity1.11E-03
55GO:0045174: glutathione dehydrogenase (ascorbate) activity1.11E-03
56GO:0030267: glyoxylate reductase (NADP) activity1.11E-03
57GO:0071917: triose-phosphate transmembrane transporter activity1.11E-03
58GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.11E-03
59GO:0043169: cation binding1.11E-03
60GO:0004373: glycogen (starch) synthase activity1.11E-03
61GO:0005504: fatty acid binding1.11E-03
62GO:0004857: enzyme inhibitor activity1.52E-03
63GO:0016149: translation release factor activity, codon specific1.60E-03
64GO:0004550: nucleoside diphosphate kinase activity1.60E-03
65GO:0016851: magnesium chelatase activity1.60E-03
66GO:0043023: ribosomal large subunit binding1.60E-03
67GO:0009011: starch synthase activity2.14E-03
68GO:0008878: glucose-1-phosphate adenylyltransferase activity2.14E-03
69GO:0019199: transmembrane receptor protein kinase activity2.14E-03
70GO:0042277: peptide binding2.14E-03
71GO:0015120: phosphoglycerate transmembrane transporter activity2.14E-03
72GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.14E-03
73GO:0019104: DNA N-glycosylase activity2.14E-03
74GO:0045430: chalcone isomerase activity2.14E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor2.74E-03
76GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity2.74E-03
77GO:0004372: glycine hydroxymethyltransferase activity2.74E-03
78GO:0004601: peroxidase activity3.14E-03
79GO:0004130: cytochrome-c peroxidase activity3.38E-03
80GO:0016615: malate dehydrogenase activity3.38E-03
81GO:2001070: starch binding3.38E-03
82GO:0004332: fructose-bisphosphate aldolase activity3.38E-03
83GO:0048038: quinone binding3.72E-03
84GO:0051082: unfolded protein binding4.03E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.06E-03
86GO:0004602: glutathione peroxidase activity4.06E-03
87GO:0030060: L-malate dehydrogenase activity4.06E-03
88GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.06E-03
89GO:0015035: protein disulfide oxidoreductase activity4.18E-03
90GO:0005515: protein binding4.78E-03
91GO:0004252: serine-type endopeptidase activity6.13E-03
92GO:0015078: hydrogen ion transmembrane transporter activity6.39E-03
93GO:0008236: serine-type peptidase activity6.67E-03
94GO:0046872: metal ion binding6.99E-03
95GO:0003747: translation release factor activity7.24E-03
96GO:0005384: manganese ion transmembrane transporter activity8.14E-03
97GO:0044183: protein binding involved in protein folding1.00E-02
98GO:0000049: tRNA binding1.11E-02
99GO:0004565: beta-galactosidase activity1.21E-02
100GO:0005315: inorganic phosphate transmembrane transporter activity1.21E-02
101GO:0004089: carbonate dehydratase activity1.21E-02
102GO:0015095: magnesium ion transmembrane transporter activity1.21E-02
103GO:0005198: structural molecule activity1.29E-02
104GO:0008408: 3'-5' exonuclease activity1.91E-02
105GO:0003824: catalytic activity2.14E-02
106GO:0008514: organic anion transmembrane transporter activity2.29E-02
107GO:0003756: protein disulfide isomerase activity2.29E-02
108GO:0004812: aminoacyl-tRNA ligase activity2.43E-02
109GO:0016787: hydrolase activity2.57E-02
110GO:0005355: glucose transmembrane transporter activity2.85E-02
111GO:0015144: carbohydrate transmembrane transporter activity3.32E-02
112GO:0003684: damaged DNA binding3.61E-02
113GO:0005351: sugar:proton symporter activity3.74E-02
114GO:0005200: structural constituent of cytoskeleton3.77E-02
115GO:0008237: metallopeptidase activity3.77E-02
116GO:0005509: calcium ion binding4.68E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
5GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
6GO:0009507: chloroplast1.15E-120
7GO:0009941: chloroplast envelope9.92E-90
8GO:0009570: chloroplast stroma1.43E-85
9GO:0009534: chloroplast thylakoid1.65E-67
10GO:0009579: thylakoid8.39E-66
11GO:0009535: chloroplast thylakoid membrane9.85E-62
12GO:0010287: plastoglobule2.84E-23
13GO:0009543: chloroplast thylakoid lumen1.06E-19
14GO:0005840: ribosome1.21E-19
15GO:0010319: stromule2.07E-18
16GO:0031977: thylakoid lumen4.40E-16
17GO:0048046: apoplast7.84E-13
18GO:0009522: photosystem I4.33E-10
19GO:0030095: chloroplast photosystem II4.60E-10
20GO:0016020: membrane5.33E-10
21GO:0030076: light-harvesting complex7.00E-10
22GO:0009706: chloroplast inner membrane2.89E-08
23GO:0005960: glycine cleavage complex1.66E-07
24GO:0009523: photosystem II1.05E-06
25GO:0009508: plastid chromosome1.61E-06
26GO:0009295: nucleoid2.51E-06
27GO:0009654: photosystem II oxygen evolving complex5.74E-06
28GO:0009533: chloroplast stromal thylakoid5.87E-06
29GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.77E-05
30GO:0019898: extrinsic component of membrane2.77E-05
31GO:0000311: plastid large ribosomal subunit4.93E-05
32GO:0042651: thylakoid membrane1.40E-04
33GO:0031969: chloroplast membrane2.04E-04
34GO:0000791: euchromatin3.14E-04
35GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex3.14E-04
36GO:0009783: photosystem II antenna complex3.14E-04
37GO:0009547: plastid ribosome3.14E-04
38GO:0009782: photosystem I antenna complex3.14E-04
39GO:0009501: amyloplast3.24E-04
40GO:0009538: photosystem I reaction center3.24E-04
41GO:0030093: chloroplast photosystem I6.87E-04
42GO:0030870: Mre11 complex6.87E-04
43GO:0000427: plastid-encoded plastid RNA polymerase complex6.87E-04
44GO:0009536: plastid9.29E-04
45GO:0010007: magnesium chelatase complex1.11E-03
46GO:0009528: plastid inner membrane1.11E-03
47GO:0015934: large ribosomal subunit1.14E-03
48GO:0015935: small ribosomal subunit1.84E-03
49GO:0009532: plastid stroma1.84E-03
50GO:0009527: plastid outer membrane2.14E-03
51GO:0055035: plastid thylakoid membrane2.74E-03
52GO:0009512: cytochrome b6f complex2.74E-03
53GO:0000795: synaptonemal complex2.74E-03
54GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.38E-03
55GO:0009840: chloroplastic endopeptidase Clp complex4.06E-03
56GO:0022625: cytosolic large ribosomal subunit4.71E-03
57GO:0022626: cytosolic ribosome4.97E-03
58GO:0031305: integral component of mitochondrial inner membrane5.57E-03
59GO:0042644: chloroplast nucleoid7.24E-03
60GO:0045298: tubulin complex7.24E-03
61GO:0005763: mitochondrial small ribosomal subunit7.24E-03
62GO:0005740: mitochondrial envelope9.07E-03
63GO:0000312: plastid small ribosomal subunit1.32E-02
64GO:0000785: chromatin3.30E-02
65GO:0005759: mitochondrial matrix3.49E-02
66GO:0030529: intracellular ribonucleoprotein complex4.09E-02
67GO:0009707: chloroplast outer membrane4.93E-02
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Gene type



Gene DE type