Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G44446

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905157: positive regulation of photosynthesis0.00E+00
2GO:0015843: methylammonium transport0.00E+00
3GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
4GO:0019685: photosynthesis, dark reaction0.00E+00
5GO:0015678: high-affinity copper ion transport0.00E+00
6GO:1901918: negative regulation of exoribonuclease activity0.00E+00
7GO:0098586: cellular response to virus0.00E+00
8GO:0090470: shoot organ boundary specification0.00E+00
9GO:0017009: protein-phycocyanobilin linkage0.00E+00
10GO:0009304: tRNA transcription0.00E+00
11GO:0009661: chromoplast organization0.00E+00
12GO:0005997: xylulose metabolic process0.00E+00
13GO:0015882: L-ascorbic acid transport0.00E+00
14GO:0051246: regulation of protein metabolic process0.00E+00
15GO:0009658: chloroplast organization2.78E-08
16GO:2001141: regulation of RNA biosynthetic process2.84E-07
17GO:0016120: carotene biosynthetic process1.85E-06
18GO:0080005: photosystem stoichiometry adjustment6.59E-06
19GO:0000256: allantoin catabolic process6.59E-06
20GO:0055114: oxidation-reduction process1.32E-05
21GO:0010136: ureide catabolic process2.30E-05
22GO:0006145: purine nucleobase catabolic process5.04E-05
23GO:0006352: DNA-templated transcription, initiation6.23E-05
24GO:0071483: cellular response to blue light8.90E-05
25GO:0009902: chloroplast relocation8.90E-05
26GO:0010021: amylopectin biosynthetic process8.90E-05
27GO:0010207: photosystem II assembly1.14E-04
28GO:0035434: copper ion transmembrane transport1.39E-04
29GO:0010190: cytochrome b6f complex assembly1.99E-04
30GO:0009643: photosynthetic acclimation1.99E-04
31GO:0010189: vitamin E biosynthetic process2.69E-04
32GO:0010028: xanthophyll cycle3.84E-04
33GO:0010362: negative regulation of anion channel activity by blue light3.84E-04
34GO:0031426: polycistronic mRNA processing3.84E-04
35GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.84E-04
36GO:0071277: cellular response to calcium ion3.84E-04
37GO:0042371: vitamin K biosynthetic process3.84E-04
38GO:0071461: cellular response to redox state3.84E-04
39GO:0016117: carotenoid biosynthetic process3.86E-04
40GO:0009644: response to high light intensity4.61E-04
41GO:0071482: cellular response to light stimulus5.32E-04
42GO:0009657: plastid organization5.32E-04
43GO:0019252: starch biosynthetic process5.67E-04
44GO:0009821: alkaloid biosynthetic process6.38E-04
45GO:0009638: phototropism7.52E-04
46GO:0016122: xanthophyll metabolic process8.33E-04
47GO:0080185: effector dependent induction by symbiont of host immune response8.33E-04
48GO:0042853: L-alanine catabolic process8.33E-04
49GO:0046741: transport of virus in host, tissue to tissue8.33E-04
50GO:0010115: regulation of abscisic acid biosynthetic process8.33E-04
51GO:0009915: phloem sucrose loading8.33E-04
52GO:2000030: regulation of response to red or far red light8.33E-04
53GO:0042548: regulation of photosynthesis, light reaction8.33E-04
54GO:0006898: receptor-mediated endocytosis8.33E-04
55GO:0006435: threonyl-tRNA aminoacylation8.33E-04
56GO:1904143: positive regulation of carotenoid biosynthetic process8.33E-04
57GO:0042550: photosystem I stabilization8.33E-04
58GO:0071805: potassium ion transmembrane transport8.52E-04
59GO:0015995: chlorophyll biosynthetic process1.20E-03
60GO:0009767: photosynthetic electron transport chain1.31E-03
61GO:0005986: sucrose biosynthetic process1.31E-03
62GO:0005977: glycogen metabolic process1.35E-03
63GO:0006013: mannose metabolic process1.35E-03
64GO:0071836: nectar secretion1.35E-03
65GO:0006696: ergosterol biosynthetic process1.35E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.95E-03
67GO:0010371: regulation of gibberellin biosynthetic process1.95E-03
68GO:0006166: purine ribonucleoside salvage1.95E-03
69GO:0071484: cellular response to light intensity1.95E-03
70GO:0046653: tetrahydrofolate metabolic process1.95E-03
71GO:0010239: chloroplast mRNA processing1.95E-03
72GO:0090307: mitotic spindle assembly1.95E-03
73GO:0006809: nitric oxide biosynthetic process1.95E-03
74GO:0015696: ammonium transport1.95E-03
75GO:0006168: adenine salvage1.95E-03
76GO:0043572: plastid fission1.95E-03
77GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center1.95E-03
78GO:0015979: photosynthesis2.10E-03
79GO:0006825: copper ion transport2.25E-03
80GO:0007017: microtubule-based process2.25E-03
81GO:0007623: circadian rhythm2.54E-03
82GO:0009765: photosynthesis, light harvesting2.62E-03
83GO:0031122: cytoplasmic microtubule organization2.62E-03
84GO:0015994: chlorophyll metabolic process2.62E-03
85GO:0072488: ammonium transmembrane transport2.62E-03
86GO:0016123: xanthophyll biosynthetic process3.35E-03
87GO:0044209: AMP salvage3.35E-03
88GO:0010117: photoprotection3.35E-03
89GO:0009904: chloroplast accumulation movement3.35E-03
90GO:0045038: protein import into chloroplast thylakoid membrane3.35E-03
91GO:0006813: potassium ion transport3.75E-03
92GO:0010197: polar nucleus fusion4.05E-03
93GO:0010182: sugar mediated signaling pathway4.05E-03
94GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.14E-03
95GO:0000741: karyogamy4.14E-03
96GO:0006561: proline biosynthetic process4.14E-03
97GO:0006096: glycolytic process4.64E-03
98GO:0009791: post-embryonic development4.67E-03
99GO:0009648: photoperiodism4.99E-03
100GO:0071470: cellular response to osmotic stress4.99E-03
101GO:0009903: chloroplast avoidance movement4.99E-03
102GO:0010019: chloroplast-nucleus signaling pathway4.99E-03
103GO:0010193: response to ozone5.00E-03
104GO:0048528: post-embryonic root development5.89E-03
105GO:1900056: negative regulation of leaf senescence5.89E-03
106GO:0010038: response to metal ion5.89E-03
107GO:0048564: photosystem I assembly6.85E-03
108GO:0009642: response to light intensity6.85E-03
109GO:0019375: galactolipid biosynthetic process6.85E-03
110GO:0009704: de-etiolation6.85E-03
111GO:0050821: protein stabilization6.85E-03
112GO:0009932: cell tip growth7.86E-03
113GO:0032544: plastid translation7.86E-03
114GO:0006810: transport8.22E-03
115GO:0009058: biosynthetic process8.39E-03
116GO:0098656: anion transmembrane transport8.92E-03
117GO:0034765: regulation of ion transmembrane transport8.92E-03
118GO:0090333: regulation of stomatal closure8.92E-03
119GO:0048507: meristem development8.92E-03
120GO:0000373: Group II intron splicing8.92E-03
121GO:0046686: response to cadmium ion9.32E-03
122GO:0018298: protein-chromophore linkage9.46E-03
123GO:1900426: positive regulation of defense response to bacterium1.00E-02
124GO:0009098: leucine biosynthetic process1.00E-02
125GO:0010380: regulation of chlorophyll biosynthetic process1.00E-02
126GO:0006811: ion transport1.04E-02
127GO:0007568: aging1.10E-02
128GO:0009641: shade avoidance1.12E-02
129GO:0006259: DNA metabolic process1.12E-02
130GO:0051555: flavonol biosynthetic process1.12E-02
131GO:0009970: cellular response to sulfate starvation1.12E-02
132GO:0006995: cellular response to nitrogen starvation1.12E-02
133GO:0009688: abscisic acid biosynthetic process1.12E-02
134GO:0045036: protein targeting to chloroplast1.12E-02
135GO:0045893: positive regulation of transcription, DNA-templated1.15E-02
136GO:0009637: response to blue light1.20E-02
137GO:0009853: photorespiration1.20E-02
138GO:0006265: DNA topological change1.24E-02
139GO:0043085: positive regulation of catalytic activity1.24E-02
140GO:0009773: photosynthetic electron transport in photosystem I1.24E-02
141GO:0008285: negative regulation of cell proliferation1.24E-02
142GO:0009750: response to fructose1.24E-02
143GO:0018119: peptidyl-cysteine S-nitrosylation1.24E-02
144GO:0016485: protein processing1.24E-02
145GO:0034599: cellular response to oxidative stress1.26E-02
146GO:0009725: response to hormone1.49E-02
147GO:0006006: glucose metabolic process1.49E-02
148GO:0009744: response to sucrose1.55E-02
149GO:0010114: response to red light1.55E-02
150GO:0009266: response to temperature stimulus1.63E-02
151GO:0010020: chloroplast fission1.63E-02
152GO:0007015: actin filament organization1.63E-02
153GO:0010223: secondary shoot formation1.63E-02
154GO:0019253: reductive pentose-phosphate cycle1.63E-02
155GO:0009636: response to toxic substance1.75E-02
156GO:0042343: indole glucosinolate metabolic process1.77E-02
157GO:0006071: glycerol metabolic process1.91E-02
158GO:0006833: water transport1.91E-02
159GO:0080147: root hair cell development2.05E-02
160GO:0009863: salicylic acid mediated signaling pathway2.05E-02
161GO:0006364: rRNA processing2.10E-02
162GO:0009585: red, far-red light phototransduction2.10E-02
163GO:0010073: meristem maintenance2.20E-02
164GO:0051302: regulation of cell division2.20E-02
165GO:0098542: defense response to other organism2.36E-02
166GO:0031408: oxylipin biosynthetic process2.36E-02
167GO:0006366: transcription from RNA polymerase II promoter2.36E-02
168GO:0019748: secondary metabolic process2.51E-02
169GO:0016226: iron-sulfur cluster assembly2.51E-02
170GO:0080092: regulation of pollen tube growth2.51E-02
171GO:0010227: floral organ abscission2.67E-02
172GO:0006817: phosphate ion transport2.84E-02
173GO:0009306: protein secretion2.84E-02
174GO:0009416: response to light stimulus2.92E-02
175GO:0009624: response to nematode2.99E-02
176GO:0006979: response to oxidative stress3.06E-02
177GO:0010118: stomatal movement3.18E-02
178GO:0006606: protein import into nucleus3.18E-02
179GO:0042335: cuticle development3.18E-02
180GO:0034220: ion transmembrane transport3.18E-02
181GO:0042391: regulation of membrane potential3.18E-02
182GO:0006662: glycerol ether metabolic process3.35E-02
183GO:0045454: cell redox homeostasis3.37E-02
184GO:0007059: chromosome segregation3.53E-02
185GO:0008654: phospholipid biosynthetic process3.71E-02
186GO:0000302: response to reactive oxygen species3.89E-02
187GO:0019761: glucosinolate biosynthetic process4.08E-02
188GO:0006457: protein folding4.25E-02
189GO:0009409: response to cold4.95E-02
RankGO TermAdjusted P value
1GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0045436: lycopene beta cyclase activity0.00E+00
4GO:0009673: low-affinity phosphate transmembrane transporter activity0.00E+00
5GO:0008115: sarcosine oxidase activity0.00E+00
6GO:0010301: xanthoxin dehydrogenase activity0.00E+00
7GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
8GO:0010276: phytol kinase activity0.00E+00
9GO:0009976: tocopherol cyclase activity0.00E+00
10GO:0015229: L-ascorbic acid transporter activity0.00E+00
11GO:0045435: lycopene epsilon cyclase activity0.00E+00
12GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
13GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity0.00E+00
14GO:0046905: phytoene synthase activity0.00E+00
15GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
16GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
17GO:0001053: plastid sigma factor activity8.21E-07
18GO:0016987: sigma factor activity8.21E-07
19GO:0004373: glycogen (starch) synthase activity2.30E-05
20GO:0004848: ureidoglycolate hydrolase activity2.30E-05
21GO:0016851: magnesium chelatase activity5.04E-05
22GO:0009011: starch synthase activity8.90E-05
23GO:0000293: ferric-chelate reductase activity1.99E-04
24GO:0015079: potassium ion transmembrane transporter activity2.12E-04
25GO:0016491: oxidoreductase activity2.39E-04
26GO:0019899: enzyme binding3.47E-04
27GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.84E-04
28GO:0035671: enone reductase activity3.84E-04
29GO:0046480: galactolipid galactosyltransferase activity3.84E-04
30GO:0046906: tetrapyrrole binding3.84E-04
31GO:0004451: isocitrate lyase activity3.84E-04
32GO:0004856: xylulokinase activity3.84E-04
33GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.84E-04
34GO:0016783: sulfurtransferase activity3.84E-04
35GO:0046481: digalactosyldiacylglycerol synthase activity3.84E-04
36GO:0051996: squalene synthase activity3.84E-04
37GO:0004328: formamidase activity3.84E-04
38GO:0030941: chloroplast targeting sequence binding3.84E-04
39GO:0005375: copper ion transmembrane transporter activity5.32E-04
40GO:0048038: quinone binding6.19E-04
41GO:0003899: DNA-directed 5'-3' RNA polymerase activity6.47E-04
42GO:0016844: strictosidine synthase activity7.52E-04
43GO:0033201: alpha-1,4-glucan synthase activity8.33E-04
44GO:0004829: threonine-tRNA ligase activity8.33E-04
45GO:0019156: isoamylase activity8.33E-04
46GO:0004310: farnesyl-diphosphate farnesyltransferase activity8.33E-04
47GO:0004046: aminoacylase activity8.33E-04
48GO:0003862: 3-isopropylmalate dehydrogenase activity8.33E-04
49GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity8.33E-04
50GO:0005089: Rho guanyl-nucleotide exchange factor activity1.01E-03
51GO:0005315: inorganic phosphate transmembrane transporter activity1.31E-03
52GO:0015089: high-affinity copper ion transmembrane transporter activity1.35E-03
53GO:0008430: selenium binding1.35E-03
54GO:0004180: carboxypeptidase activity1.35E-03
55GO:0046524: sucrose-phosphate synthase activity1.35E-03
56GO:0003913: DNA photolyase activity1.35E-03
57GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.35E-03
58GO:0050307: sucrose-phosphate phosphatase activity1.35E-03
59GO:0032947: protein complex scaffold1.35E-03
60GO:0004148: dihydrolipoyl dehydrogenase activity1.35E-03
61GO:0004096: catalase activity1.35E-03
62GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.95E-03
63GO:0035250: UDP-galactosyltransferase activity1.95E-03
64GO:0003999: adenine phosphoribosyltransferase activity1.95E-03
65GO:0048027: mRNA 5'-UTR binding1.95E-03
66GO:0004792: thiosulfate sulfurtransferase activity1.95E-03
67GO:0022890: inorganic cation transmembrane transporter activity1.95E-03
68GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides1.95E-03
69GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.95E-03
70GO:0009882: blue light photoreceptor activity1.95E-03
71GO:0051861: glycolipid binding2.62E-03
72GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.62E-03
73GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity2.62E-03
74GO:0008453: alanine-glyoxylate transaminase activity2.62E-03
75GO:0043015: gamma-tubulin binding2.62E-03
76GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.62E-03
77GO:0051011: microtubule minus-end binding3.35E-03
78GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen3.35E-03
79GO:0016773: phosphotransferase activity, alcohol group as acceptor3.35E-03
80GO:0004605: phosphatidate cytidylyltransferase activity4.14E-03
81GO:0004709: MAP kinase kinase kinase activity4.14E-03
82GO:0004556: alpha-amylase activity4.14E-03
83GO:0008519: ammonium transmembrane transporter activity4.14E-03
84GO:0016853: isomerase activity4.35E-03
85GO:0016157: sucrose synthase activity4.99E-03
86GO:0005242: inward rectifier potassium channel activity4.99E-03
87GO:0015631: tubulin binding4.99E-03
88GO:0004559: alpha-mannosidase activity4.99E-03
89GO:0008237: metallopeptidase activity6.44E-03
90GO:0016887: ATPase activity7.14E-03
91GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity7.86E-03
92GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen8.11E-03
93GO:0008889: glycerophosphodiester phosphodiesterase activity8.92E-03
94GO:0045309: protein phosphorylated amino acid binding1.00E-02
95GO:0005506: iron ion binding1.03E-02
96GO:0050897: cobalt ion binding1.10E-02
97GO:0019904: protein domain specific binding1.24E-02
98GO:0015386: potassium:proton antiporter activity1.24E-02
99GO:0001054: RNA polymerase I activity1.24E-02
100GO:0001056: RNA polymerase III activity1.37E-02
101GO:0031072: heat shock protein binding1.49E-02
102GO:0000155: phosphorelay sensor kinase activity1.49E-02
103GO:0004364: glutathione transferase activity1.49E-02
104GO:0008081: phosphoric diester hydrolase activity1.49E-02
105GO:0004022: alcohol dehydrogenase (NAD) activity1.49E-02
106GO:0042802: identical protein binding1.60E-02
107GO:0051536: iron-sulfur cluster binding2.05E-02
108GO:0001046: core promoter sequence-specific DNA binding2.05E-02
109GO:0003777: microtubule motor activity2.32E-02
110GO:0004176: ATP-dependent peptidase activity2.36E-02
111GO:0022891: substrate-specific transmembrane transporter activity2.67E-02
112GO:0008514: organic anion transmembrane transporter activity2.84E-02
113GO:0003727: single-stranded RNA binding2.84E-02
114GO:0047134: protein-disulfide reductase activity3.01E-02
115GO:0005249: voltage-gated potassium channel activity3.18E-02
116GO:0030551: cyclic nucleotide binding3.18E-02
117GO:0008080: N-acetyltransferase activity3.35E-02
118GO:0004791: thioredoxin-disulfide reductase activity3.53E-02
119GO:0015299: solute:proton antiporter activity3.53E-02
120GO:0010181: FMN binding3.53E-02
121GO:0004872: receptor activity3.71E-02
122GO:0016762: xyloglucan:xyloglucosyl transferase activity3.89E-02
123GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.27E-02
124GO:0008565: protein transporter activity4.46E-02
125GO:0016791: phosphatase activity4.46E-02
126GO:0008483: transaminase activity4.66E-02
127GO:0005200: structural constituent of cytoskeleton4.66E-02
128GO:0009055: electron carrier activity4.75E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast3.20E-37
2GO:0009535: chloroplast thylakoid membrane1.29E-16
3GO:0031969: chloroplast membrane7.81E-08
4GO:0009941: chloroplast envelope1.12E-06
5GO:0009534: chloroplast thylakoid1.96E-06
6GO:0009570: chloroplast stroma2.47E-06
7GO:0009706: chloroplast inner membrane2.12E-05
8GO:0030286: dynein complex8.90E-05
9GO:0009707: chloroplast outer membrane1.80E-04
10GO:0031972: chloroplast intermembrane space3.84E-04
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)6.38E-04
12GO:0008274: gamma-tubulin ring complex8.33E-04
13GO:0045254: pyruvate dehydrogenase complex8.33E-04
14GO:0009569: chloroplast starch grain8.33E-04
15GO:0080085: signal recognition particle, chloroplast targeting8.33E-04
16GO:0010319: stromule8.52E-04
17GO:0033281: TAT protein transport complex1.35E-03
18GO:0010007: magnesium chelatase complex1.35E-03
19GO:0010287: plastoglobule1.43E-03
20GO:0000923: equatorial microtubule organizing center1.95E-03
21GO:0009654: photosystem II oxygen evolving complex2.25E-03
22GO:0031977: thylakoid lumen2.31E-03
23GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.62E-03
24GO:0009579: thylakoid3.80E-03
25GO:0005773: vacuole5.07E-03
26GO:0009536: plastid5.58E-03
27GO:0031359: integral component of chloroplast outer membrane5.89E-03
28GO:0009501: amyloplast6.85E-03
29GO:0031982: vesicle6.85E-03
30GO:0009543: chloroplast thylakoid lumen7.84E-03
31GO:0009514: glyoxysome7.86E-03
32GO:0009539: photosystem II reaction center7.86E-03
33GO:0005786: signal recognition particle, endoplasmic reticulum targeting7.86E-03
34GO:0005736: DNA-directed RNA polymerase I complex8.92E-03
35GO:0000922: spindle pole8.92E-03
36GO:0042644: chloroplast nucleoid8.92E-03
37GO:0005666: DNA-directed RNA polymerase III complex1.00E-02
38GO:0005759: mitochondrial matrix1.05E-02
39GO:0016324: apical plasma membrane1.12E-02
40GO:0005777: peroxisome1.15E-02
41GO:0030095: chloroplast photosystem II1.63E-02
42GO:0005875: microtubule associated complex1.91E-02
43GO:0042651: thylakoid membrane2.20E-02
44GO:0045271: respiratory chain complex I2.20E-02
45GO:0009532: plastid stroma2.36E-02
46GO:0005747: mitochondrial respiratory chain complex I2.56E-02
47GO:0019898: extrinsic component of membrane3.71E-02
48GO:0009523: photosystem II3.71E-02
49GO:0005623: cell3.84E-02
50GO:0009295: nucleoid4.66E-02
51GO:0005778: peroxisomal membrane4.66E-02
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Gene type



Gene DE type