Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G42970

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1903428: positive regulation of reactive oxygen species biosynthetic process0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0034337: RNA folding0.00E+00
4GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
5GO:2000505: regulation of energy homeostasis0.00E+00
6GO:0017038: protein import0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
9GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
10GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
11GO:0005996: monosaccharide metabolic process0.00E+00
12GO:0016118: carotenoid catabolic process0.00E+00
13GO:0015882: L-ascorbic acid transport0.00E+00
14GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
15GO:0015979: photosynthesis8.22E-29
16GO:0018298: protein-chromophore linkage6.88E-15
17GO:0009768: photosynthesis, light harvesting in photosystem I3.35E-14
18GO:0010207: photosystem II assembly6.31E-13
19GO:0010196: nonphotochemical quenching7.12E-11
20GO:0006000: fructose metabolic process1.29E-08
21GO:0010027: thylakoid membrane organization2.18E-08
22GO:0015995: chlorophyll biosynthetic process3.74E-08
23GO:0006546: glycine catabolic process1.84E-07
24GO:0009773: photosynthetic electron transport in photosystem I2.59E-07
25GO:0006094: gluconeogenesis4.95E-07
26GO:0042549: photosystem II stabilization8.17E-07
27GO:0009735: response to cytokinin1.12E-06
28GO:0030388: fructose 1,6-bisphosphate metabolic process2.23E-06
29GO:0035304: regulation of protein dephosphorylation2.23E-06
30GO:0010218: response to far red light2.28E-06
31GO:0009645: response to low light intensity stimulus2.33E-06
32GO:0009769: photosynthesis, light harvesting in photosystem II2.33E-06
33GO:0006002: fructose 6-phosphate metabolic process5.18E-06
34GO:0010114: response to red light6.37E-06
35GO:0010206: photosystem II repair7.27E-06
36GO:0009644: response to high light intensity7.78E-06
37GO:0090391: granum assembly8.14E-06
38GO:0010205: photoinhibition9.86E-06
39GO:0019684: photosynthesis, light reaction1.68E-05
40GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.87E-05
41GO:0042742: defense response to bacterium2.50E-05
42GO:0019253: reductive pentose-phosphate cycle3.23E-05
43GO:0009658: chloroplast organization3.27E-05
44GO:0019464: glycine decarboxylation via glycine cleavage system3.41E-05
45GO:0009637: response to blue light6.31E-05
46GO:0009772: photosynthetic electron transport in photosystem II1.47E-04
47GO:0019252: starch biosynthetic process1.91E-04
48GO:0065002: intracellular protein transmembrane transport2.18E-04
49GO:0080093: regulation of photorespiration2.18E-04
50GO:0043609: regulation of carbon utilization2.18E-04
51GO:0043007: maintenance of rDNA2.18E-04
52GO:0031998: regulation of fatty acid beta-oxidation2.18E-04
53GO:1902458: positive regulation of stomatal opening2.18E-04
54GO:0010028: xanthophyll cycle2.18E-04
55GO:0043953: protein transport by the Tat complex2.18E-04
56GO:1904966: positive regulation of vitamin E biosynthetic process2.18E-04
57GO:0051775: response to redox state2.18E-04
58GO:0071277: cellular response to calcium ion2.18E-04
59GO:0000481: maturation of 5S rRNA2.18E-04
60GO:1904964: positive regulation of phytol biosynthetic process2.18E-04
61GO:0032544: plastid translation2.33E-04
62GO:0006098: pentose-phosphate shunt2.82E-04
63GO:0090333: regulation of stomatal closure2.82E-04
64GO:0006729: tetrahydrobiopterin biosynthetic process4.86E-04
65GO:0016121: carotene catabolic process4.86E-04
66GO:1903426: regulation of reactive oxygen species biosynthetic process4.86E-04
67GO:0016124: xanthophyll catabolic process4.86E-04
68GO:0019388: galactose catabolic process4.86E-04
69GO:1902326: positive regulation of chlorophyll biosynthetic process4.86E-04
70GO:0006432: phenylalanyl-tRNA aminoacylation4.86E-04
71GO:0097054: L-glutamate biosynthetic process4.86E-04
72GO:0045037: protein import into chloroplast stroma5.22E-04
73GO:0005986: sucrose biosynthetic process5.92E-04
74GO:0006108: malate metabolic process5.92E-04
75GO:0006006: glucose metabolic process5.92E-04
76GO:0016050: vesicle organization7.90E-04
77GO:0005977: glycogen metabolic process7.90E-04
78GO:0071492: cellular response to UV-A7.90E-04
79GO:0061077: chaperone-mediated protein folding1.10E-03
80GO:0009269: response to desiccation1.10E-03
81GO:0009409: response to cold1.11E-03
82GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.13E-03
83GO:0006020: inositol metabolic process1.13E-03
84GO:0071484: cellular response to light intensity1.13E-03
85GO:0006107: oxaloacetate metabolic process1.13E-03
86GO:0006537: glutamate biosynthetic process1.13E-03
87GO:0009590: detection of gravity1.13E-03
88GO:0006810: transport1.32E-03
89GO:0010021: amylopectin biosynthetic process1.50E-03
90GO:0010109: regulation of photosynthesis1.50E-03
91GO:0019676: ammonia assimilation cycle1.50E-03
92GO:0015976: carbon utilization1.50E-03
93GO:0071486: cellular response to high light intensity1.50E-03
94GO:0009765: photosynthesis, light harvesting1.50E-03
95GO:0006109: regulation of carbohydrate metabolic process1.50E-03
96GO:0045727: positive regulation of translation1.50E-03
97GO:0015994: chlorophyll metabolic process1.50E-03
98GO:0030104: water homeostasis1.50E-03
99GO:0006021: inositol biosynthetic process1.50E-03
100GO:0006734: NADH metabolic process1.50E-03
101GO:0016117: carotenoid biosynthetic process1.54E-03
102GO:0006096: glycolytic process1.62E-03
103GO:0055114: oxidation-reduction process1.77E-03
104GO:0006097: glyoxylate cycle1.91E-03
105GO:0016123: xanthophyll biosynthetic process1.91E-03
106GO:0016120: carotene biosynthetic process1.91E-03
107GO:0006564: L-serine biosynthetic process1.91E-03
108GO:0010236: plastoquinone biosynthetic process1.91E-03
109GO:0045038: protein import into chloroplast thylakoid membrane1.91E-03
110GO:0046855: inositol phosphate dephosphorylation2.35E-03
111GO:0009635: response to herbicide2.35E-03
112GO:0050665: hydrogen peroxide biosynthetic process2.35E-03
113GO:0009854: oxidative photosynthetic carbon pathway2.83E-03
114GO:1901259: chloroplast rRNA processing2.83E-03
115GO:0010189: vitamin E biosynthetic process2.83E-03
116GO:0071446: cellular response to salicylic acid stimulus3.33E-03
117GO:0048564: photosystem I assembly3.86E-03
118GO:0005978: glycogen biosynthetic process3.86E-03
119GO:0009642: response to light intensity3.86E-03
120GO:0006605: protein targeting3.86E-03
121GO:0009704: de-etiolation3.86E-03
122GO:0032508: DNA duplex unwinding3.86E-03
123GO:2000070: regulation of response to water deprivation3.86E-03
124GO:2000031: regulation of salicylic acid mediated signaling pathway4.42E-03
125GO:0015996: chlorophyll catabolic process4.42E-03
126GO:0007186: G-protein coupled receptor signaling pathway4.42E-03
127GO:0098656: anion transmembrane transport5.00E-03
128GO:0009245: lipid A biosynthetic process5.00E-03
129GO:0006754: ATP biosynthetic process5.00E-03
130GO:0006099: tricarboxylic acid cycle5.46E-03
131GO:0009073: aromatic amino acid family biosynthetic process6.91E-03
132GO:0043085: positive regulation of catalytic activity6.91E-03
133GO:0000272: polysaccharide catabolic process6.91E-03
134GO:0018119: peptidyl-cysteine S-nitrosylation6.91E-03
135GO:0006790: sulfur compound metabolic process7.60E-03
136GO:0005983: starch catabolic process7.60E-03
137GO:0009767: photosynthetic electron transport chain8.30E-03
138GO:0009416: response to light stimulus8.37E-03
139GO:0010020: chloroplast fission9.03E-03
140GO:0046854: phosphatidylinositol phosphorylation9.79E-03
141GO:0005985: sucrose metabolic process9.79E-03
142GO:0006636: unsaturated fatty acid biosynthetic process1.06E-02
143GO:0071215: cellular response to abscisic acid stimulus1.48E-02
144GO:0005975: carbohydrate metabolic process1.49E-02
145GO:0046686: response to cadmium ion1.55E-02
146GO:0009561: megagametogenesis1.57E-02
147GO:0042631: cellular response to water deprivation1.75E-02
148GO:0042335: cuticle development1.75E-02
149GO:0010182: sugar mediated signaling pathway1.85E-02
150GO:0006662: glycerol ether metabolic process1.85E-02
151GO:0006814: sodium ion transport1.95E-02
152GO:0009646: response to absence of light1.95E-02
153GO:0015986: ATP synthesis coupled proton transport1.95E-02
154GO:0006412: translation2.02E-02
155GO:0006633: fatty acid biosynthetic process2.04E-02
156GO:0009791: post-embryonic development2.05E-02
157GO:0071554: cell wall organization or biogenesis2.15E-02
158GO:0010090: trichome morphogenesis2.36E-02
159GO:0009567: double fertilization forming a zygote and endosperm2.46E-02
160GO:0009627: systemic acquired resistance3.02E-02
161GO:0016311: dephosphorylation3.25E-02
162GO:0009817: defense response to fungus, incompatible interaction3.37E-02
163GO:0009813: flavonoid biosynthetic process3.49E-02
164GO:0042254: ribosome biogenesis3.54E-02
165GO:0006499: N-terminal protein myristoylation3.62E-02
166GO:0010119: regulation of stomatal movement3.74E-02
167GO:0009853: photorespiration3.99E-02
168GO:0016051: carbohydrate biosynthetic process3.99E-02
169GO:0034599: cellular response to oxidative stress4.12E-02
170GO:0006631: fatty acid metabolic process4.51E-02
171GO:0009744: response to sucrose4.78E-02
RankGO TermAdjusted P value
1GO:0046408: chlorophyll synthetase activity0.00E+00
2GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
3GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
4GO:0046554: malate dehydrogenase (NADP+) activity0.00E+00
5GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
6GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
7GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
8GO:0010242: oxygen evolving activity0.00E+00
9GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
10GO:0016166: phytoene dehydrogenase activity0.00E+00
11GO:0015229: L-ascorbic acid transporter activity0.00E+00
12GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
13GO:0016168: chlorophyll binding2.12E-15
14GO:0031409: pigment binding1.22E-14
15GO:0019843: rRNA binding2.00E-07
16GO:0008266: poly(U) RNA binding6.63E-07
17GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.23E-06
18GO:0004375: glycine dehydrogenase (decarboxylating) activity1.87E-05
19GO:0016851: magnesium chelatase activity1.87E-05
20GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.41E-05
21GO:0003959: NADPH dehydrogenase activity5.47E-05
22GO:0005528: FK506 binding5.49E-05
23GO:0016615: malate dehydrogenase activity8.04E-05
24GO:2001070: starch binding8.04E-05
25GO:0004332: fructose-bisphosphate aldolase activity8.04E-05
26GO:0030060: L-malate dehydrogenase activity1.11E-04
27GO:0016041: glutamate synthase (ferredoxin) activity2.18E-04
28GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity2.18E-04
29GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity2.18E-04
30GO:0050308: sugar-phosphatase activity2.18E-04
31GO:0019203: carbohydrate phosphatase activity2.18E-04
32GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity2.18E-04
33GO:0045485: omega-6 fatty acid desaturase activity2.18E-04
34GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.18E-04
35GO:0008746: NAD(P)+ transhydrogenase activity2.18E-04
36GO:0010291: carotene beta-ring hydroxylase activity4.86E-04
37GO:0047746: chlorophyllase activity4.86E-04
38GO:0010297: heteropolysaccharide binding4.86E-04
39GO:0009977: proton motive force dependent protein transmembrane transporter activity4.86E-04
40GO:0004617: phosphoglycerate dehydrogenase activity4.86E-04
41GO:0004047: aminomethyltransferase activity4.86E-04
42GO:0052832: inositol monophosphate 3-phosphatase activity4.86E-04
43GO:0016630: protochlorophyllide reductase activity4.86E-04
44GO:0008934: inositol monophosphate 1-phosphatase activity4.86E-04
45GO:0004614: phosphoglucomutase activity4.86E-04
46GO:0019156: isoamylase activity4.86E-04
47GO:0052833: inositol monophosphate 4-phosphatase activity4.86E-04
48GO:0004826: phenylalanine-tRNA ligase activity4.86E-04
49GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.86E-04
50GO:0008967: phosphoglycolate phosphatase activity4.86E-04
51GO:0031072: heat shock protein binding5.92E-04
52GO:0003746: translation elongation factor activity6.61E-04
53GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor7.90E-04
54GO:0015462: ATPase-coupled protein transmembrane transporter activity7.90E-04
55GO:0004324: ferredoxin-NADP+ reductase activity7.90E-04
56GO:0005504: fatty acid binding7.90E-04
57GO:0003913: DNA photolyase activity7.90E-04
58GO:0005198: structural molecule activity1.05E-03
59GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.10E-03
60GO:0008508: bile acid:sodium symporter activity1.13E-03
61GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity1.13E-03
62GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity1.13E-03
63GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity1.13E-03
64GO:0022891: substrate-specific transmembrane transporter activity1.31E-03
65GO:0045430: chalcone isomerase activity1.50E-03
66GO:0043495: protein anchor1.50E-03
67GO:0008891: glycolate oxidase activity1.50E-03
68GO:0005509: calcium ion binding1.75E-03
69GO:0051538: 3 iron, 4 sulfur cluster binding1.91E-03
70GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity1.91E-03
71GO:0048038: quinone binding2.20E-03
72GO:0031177: phosphopantetheine binding2.35E-03
73GO:0004556: alpha-amylase activity2.35E-03
74GO:0042578: phosphoric ester hydrolase activity2.35E-03
75GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity2.83E-03
76GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.83E-03
77GO:0004017: adenylate kinase activity2.83E-03
78GO:0000035: acyl binding2.83E-03
79GO:0005515: protein binding3.19E-03
80GO:0009881: photoreceptor activity3.33E-03
81GO:0019899: enzyme binding3.33E-03
82GO:0046872: metal ion binding3.41E-03
83GO:0016491: oxidoreductase activity3.55E-03
84GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process3.86E-03
85GO:0008135: translation factor activity, RNA binding4.42E-03
86GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.00E-03
87GO:0042802: identical protein binding5.56E-03
88GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity5.62E-03
89GO:0030234: enzyme regulator activity6.25E-03
90GO:0008047: enzyme activator activity6.25E-03
91GO:0000049: tRNA binding7.60E-03
92GO:0003735: structural constituent of ribosome7.96E-03
93GO:0051287: NAD binding8.15E-03
94GO:0004089: carbonate dehydratase activity8.30E-03
95GO:0005315: inorganic phosphate transmembrane transporter activity8.30E-03
96GO:0004857: enzyme inhibitor activity1.14E-02
97GO:0051082: unfolded protein binding1.30E-02
98GO:0008514: organic anion transmembrane transporter activity1.57E-02
99GO:0003756: protein disulfide isomerase activity1.57E-02
100GO:0047134: protein-disulfide reductase activity1.66E-02
101GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.67E-02
102GO:0046933: proton-transporting ATP synthase activity, rotational mechanism1.85E-02
103GO:0004791: thioredoxin-disulfide reductase activity1.95E-02
104GO:0050662: coenzyme binding1.95E-02
105GO:0010181: FMN binding1.95E-02
106GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.36E-02
107GO:0008483: transaminase activity2.57E-02
108GO:0016413: O-acetyltransferase activity2.68E-02
109GO:0016597: amino acid binding2.68E-02
110GO:0008757: S-adenosylmethionine-dependent methyltransferase activity3.25E-02
111GO:0000287: magnesium ion binding3.41E-02
112GO:0003993: acid phosphatase activity4.12E-02
113GO:0050661: NADP binding4.38E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009783: photosystem II antenna complex0.00E+00
4GO:0010368: chloroplast isoamylase complex0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0009515: granal stacked thylakoid0.00E+00
7GO:0009507: chloroplast7.06E-88
8GO:0009534: chloroplast thylakoid2.55E-68
9GO:0009535: chloroplast thylakoid membrane1.47E-67
10GO:0009941: chloroplast envelope4.23E-57
11GO:0009579: thylakoid2.73E-46
12GO:0009570: chloroplast stroma2.78E-43
13GO:0010287: plastoglobule1.48E-23
14GO:0009543: chloroplast thylakoid lumen4.02E-18
15GO:0030095: chloroplast photosystem II3.88E-15
16GO:0031977: thylakoid lumen6.52E-14
17GO:0009522: photosystem I7.88E-13
18GO:0048046: apoplast3.32E-12
19GO:0009523: photosystem II8.07E-11
20GO:0030076: light-harvesting complex1.26E-10
21GO:0009538: photosystem I reaction center1.55E-10
22GO:0009654: photosystem II oxygen evolving complex3.89E-10
23GO:0042651: thylakoid membrane3.89E-10
24GO:0019898: extrinsic component of membrane5.01E-09
25GO:0009706: chloroplast inner membrane8.90E-08
26GO:0009517: PSII associated light-harvesting complex II1.84E-07
27GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)7.27E-06
28GO:0010007: magnesium chelatase complex8.14E-06
29GO:0016020: membrane8.74E-06
30GO:0010319: stromule1.85E-05
31GO:0005960: glycine cleavage complex1.87E-05
32GO:0005840: ribosome2.96E-05
33GO:0031361: integral component of thylakoid membrane2.18E-04
34GO:0009782: photosystem I antenna complex2.18E-04
35GO:0031969: chloroplast membrane3.83E-04
36GO:0000427: plastid-encoded plastid RNA polymerase complex4.86E-04
37GO:0032040: small-subunit processome5.22E-04
38GO:0009508: plastid chromosome5.92E-04
39GO:0009528: plastid inner membrane7.90E-04
40GO:0033281: TAT protein transport complex7.90E-04
41GO:0009509: chromoplast7.90E-04
42GO:0009532: plastid stroma1.10E-03
43GO:0009544: chloroplast ATP synthase complex1.50E-03
44GO:0009527: plastid outer membrane1.50E-03
45GO:0055035: plastid thylakoid membrane1.91E-03
46GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)2.35E-03
47GO:0016021: integral component of membrane2.43E-03
48GO:0009295: nucleoid2.82E-03
49GO:0009533: chloroplast stromal thylakoid3.33E-03
50GO:0005759: mitochondrial matrix3.64E-03
51GO:0022626: cytosolic ribosome7.82E-03
52GO:0015935: small ribosomal subunit1.30E-02
53GO:0005623: cell1.67E-02
54GO:0009536: plastid3.26E-02
55GO:0009707: chloroplast outer membrane3.37E-02
56GO:0015934: large ribosomal subunit3.74E-02
57GO:0005777: peroxisome3.76E-02
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Gene type



Gene DE type