Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G42960

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018316: peptide cross-linking via L-cystine0.00E+00
2GO:0015995: chlorophyll biosynthetic process2.56E-05
3GO:1904966: positive regulation of vitamin E biosynthetic process5.18E-05
4GO:1904964: positive regulation of phytol biosynthetic process5.18E-05
5GO:0042371: vitamin K biosynthetic process5.18E-05
6GO:0071454: cellular response to anoxia5.18E-05
7GO:0009767: photosynthetic electron transport chain7.84E-05
8GO:0015979: photosynthesis1.07E-04
9GO:0080153: negative regulation of reductive pentose-phosphate cycle1.27E-04
10GO:1902326: positive regulation of chlorophyll biosynthetic process1.27E-04
11GO:0080005: photosystem stoichiometry adjustment1.27E-04
12GO:0030187: melatonin biosynthetic process1.27E-04
13GO:0009405: pathogenesis2.17E-04
14GO:0090391: granum assembly2.17E-04
15GO:0046739: transport of virus in multicellular host3.17E-04
16GO:0016123: xanthophyll biosynthetic process5.39E-04
17GO:0018298: protein-chromophore linkage6.24E-04
18GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway6.60E-04
19GO:0000741: karyogamy6.60E-04
20GO:0009643: photosynthetic acclimation6.60E-04
21GO:0010019: chloroplast-nucleus signaling pathway7.87E-04
22GO:0009772: photosynthetic electron transport in photosystem II9.18E-04
23GO:0009744: response to sucrose9.96E-04
24GO:0048564: photosystem I assembly1.06E-03
25GO:0009051: pentose-phosphate shunt, oxidative branch1.35E-03
26GO:0000373: Group II intron splicing1.35E-03
27GO:0006949: syncytium formation1.67E-03
28GO:0009773: photosynthetic electron transport in photosystem I1.84E-03
29GO:0043085: positive regulation of catalytic activity1.84E-03
30GO:0045037: protein import into chloroplast stroma2.01E-03
31GO:0009725: response to hormone2.19E-03
32GO:0006006: glucose metabolic process2.19E-03
33GO:0034605: cellular response to heat2.38E-03
34GO:0019253: reductive pentose-phosphate cycle2.38E-03
35GO:0010207: photosystem II assembly2.38E-03
36GO:0007017: microtubule-based process3.16E-03
37GO:0080092: regulation of pollen tube growth3.59E-03
38GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.80E-03
39GO:0009306: protein secretion4.03E-03
40GO:0016117: carotenoid biosynthetic process4.26E-03
41GO:0070417: cellular response to cold4.26E-03
42GO:0010197: polar nucleus fusion4.72E-03
43GO:0015986: ATP synthesis coupled proton transport4.96E-03
44GO:0010193: response to ozone5.46E-03
45GO:0016032: viral process5.71E-03
46GO:0080167: response to karrikin6.08E-03
47GO:0009828: plant-type cell wall loosening6.23E-03
48GO:0007568: aging9.36E-03
49GO:0009644: response to high light intensity1.26E-02
50GO:0009664: plant-type cell wall organization1.40E-02
51GO:0009735: response to cytokinin1.46E-02
52GO:0010224: response to UV-B1.51E-02
53GO:0009416: response to light stimulus1.60E-02
54GO:0009742: brassinosteroid mediated signaling pathway1.97E-02
55GO:0055085: transmembrane transport2.03E-02
56GO:0007623: circadian rhythm2.79E-02
57GO:0010468: regulation of gene expression3.17E-02
58GO:0009826: unidimensional cell growth3.71E-02
59GO:0009658: chloroplast organization3.81E-02
60GO:0042254: ribosome biogenesis3.86E-02
61GO:0009860: pollen tube growth4.02E-02
62GO:0015031: protein transport4.10E-02
63GO:0046777: protein autophosphorylation4.66E-02
64GO:0006810: transport4.73E-02
RankGO TermAdjusted P value
1GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
2GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity0.00E+00
3GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
4GO:0019899: enzyme binding1.52E-05
5GO:0046906: tetrapyrrole binding5.18E-05
6GO:0022891: substrate-specific transmembrane transporter activity1.94E-04
7GO:0010277: chlorophyllide a oxygenase [overall] activity2.17E-04
8GO:0004345: glucose-6-phosphate dehydrogenase activity4.24E-04
9GO:0043495: protein anchor4.24E-04
10GO:0016168: chlorophyll binding5.10E-04
11GO:0051537: 2 iron, 2 sulfur cluster binding1.07E-03
12GO:0005089: Rho guanyl-nucleotide exchange factor activity1.84E-03
13GO:0019843: rRNA binding2.32E-03
14GO:0008565: protein transporter activity2.77E-03
15GO:0008080: N-acetyltransferase activity4.72E-03
16GO:0046933: proton-transporting ATP synthase activity, rotational mechanism4.72E-03
17GO:0004872: receptor activity5.21E-03
18GO:0048038: quinone binding5.46E-03
19GO:0005506: iron ion binding6.35E-03
20GO:0016491: oxidoreductase activity9.20E-03
21GO:0009055: electron carrier activity9.62E-03
22GO:0050661: NADP binding1.09E-02
23GO:0003735: structural constituent of ribosome1.55E-02
24GO:0003777: microtubule motor activity1.58E-02
25GO:0016746: transferase activity, transferring acyl groups1.93E-02
26GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.26E-02
27GO:0042802: identical protein binding3.31E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast1.62E-17
2GO:0009535: chloroplast thylakoid membrane3.15E-15
3GO:0009579: thylakoid1.50E-08
4GO:0009570: chloroplast stroma1.85E-06
5GO:0009941: chloroplast envelope4.22E-06
6GO:0009706: chloroplast inner membrane7.94E-06
7GO:0030095: chloroplast photosystem II9.00E-05
8GO:0009654: photosystem II oxygen evolving complex1.45E-04
9GO:0042651: thylakoid membrane1.45E-04
10GO:0033281: TAT protein transport complex2.17E-04
11GO:0009543: chloroplast thylakoid lumen2.30E-04
12GO:0009523: photosystem II3.13E-04
13GO:0030286: dynein complex4.24E-04
14GO:0009534: chloroplast thylakoid5.69E-04
15GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)6.60E-04
16GO:0031977: thylakoid lumen9.22E-04
17GO:0009539: photosystem II reaction center1.20E-03
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.35E-03
19GO:0016324: apical plasma membrane1.67E-03
20GO:0043234: protein complex2.76E-03
21GO:0005875: microtubule associated complex2.76E-03
22GO:0019898: extrinsic component of membrane5.21E-03
23GO:0010319: stromule6.49E-03
24GO:0005840: ribosome6.88E-03
25GO:0015934: large ribosomal subunit9.36E-03
26GO:0010287: plastoglobule2.14E-02
27GO:0005623: cell2.26E-02
28GO:0031969: chloroplast membrane4.44E-02
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Gene type



Gene DE type