co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G42540

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009856: pollination	0.00E+00
2	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
3	GO:0010100: negative regulation of photomorphogenesis	7.59E-08
4	GO:0007623: circadian rhythm	3.01E-07
5	GO:0000305: response to oxygen radical	3.77E-05
6	GO:1903409: reactive oxygen species biosynthetic process	3.77E-05
7	GO:0009909: regulation of flower development	6.42E-05
8	GO:0043100: pyrimidine nucleobase salvage	9.40E-05
9	GO:0042754: negative regulation of circadian rhythm	9.40E-05
10	GO:0016570: histone modification	1.63E-04
11	GO:0019419: sulfate reduction	1.63E-04
12	GO:1902476: chloride transmembrane transport	2.40E-04
13	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.40E-04
14	GO:0010600: regulation of auxin biosynthetic process	3.24E-04
15	GO:0006749: glutathione metabolic process	3.24E-04
16	GO:0071483: cellular response to blue light	3.24E-04
17	GO:0009902: chloroplast relocation	3.24E-04
18	GO:0010236: plastoquinone biosynthetic process	4.13E-04
19	GO:0045454: cell redox homeostasis	6.01E-04
20	GO:0009640: photomorphogenesis	6.76E-04
21	GO:0006368: transcription elongation from RNA polymerase II promoter	7.07E-04
22	GO:0019745: pentacyclic triterpenoid biosynthetic process	7.07E-04
23	GO:0006821: chloride transport	7.07E-04
24	GO:0070370: cellular heat acclimation	7.07E-04
25	GO:0031540: regulation of anthocyanin biosynthetic process	8.13E-04
26	GO:0048574: long-day photoperiodism, flowering	9.23E-04
27	GO:0006355: regulation of transcription, DNA-templated	9.56E-04
28	GO:0009835: fruit ripening	1.04E-03
29	GO:0051555: flavonol biosynthetic process	1.28E-03
30	GO:0000103: sulfate assimilation	1.28E-03
31	GO:0000272: polysaccharide catabolic process	1.40E-03
32	GO:0055114: oxidation-reduction process	1.62E-03
33	GO:0009785: blue light signaling pathway	1.67E-03
34	GO:0019344: cysteine biosynthetic process	2.25E-03
35	GO:0051017: actin filament bundle assembly	2.25E-03
36	GO:0009739: response to gibberellin	2.38E-03
37	GO:0008299: isoprenoid biosynthetic process	2.40E-03
38	GO:0010017: red or far-red light signaling pathway	2.72E-03
39	GO:0040007: growth	2.89E-03
40	GO:0048653: anther development	3.40E-03
41	GO:0042631: cellular response to water deprivation	3.40E-03
42	GO:0009741: response to brassinosteroid	3.58E-03
43	GO:0042752: regulation of circadian rhythm	3.76E-03
44	GO:0009723: response to ethylene	3.78E-03
45	GO:0009851: auxin biosynthetic process	3.94E-03
46	GO:0080167: response to karrikin	4.05E-03
47	GO:0009567: double fertilization forming a zygote and endosperm	4.70E-03
48	GO:0042128: nitrate assimilation	5.73E-03
49	GO:0009751: response to salicylic acid	5.87E-03
50	GO:0015995: chlorophyll biosynthetic process	5.94E-03
51	GO:0009753: response to jasmonic acid	6.39E-03
52	GO:0008152: metabolic process	6.56E-03
53	GO:0009813: flavonoid biosynthetic process	6.60E-03
54	GO:0006351: transcription, DNA-templated	6.77E-03
55	GO:0006811: ion transport	6.82E-03
56	GO:0006855: drug transmembrane transport	9.99E-03
57	GO:0009585: red, far-red light phototransduction	1.11E-02
58	GO:0006813: potassium ion transport	1.11E-02
59	GO:0010224: response to UV-B	1.13E-02
60	GO:0006857: oligopeptide transport	1.16E-02
61	GO:0009624: response to nematode	1.42E-02
62	GO:0045490: pectin catabolic process	2.09E-02
63	GO:0010228: vegetative to reproductive phase transition of meristem	2.16E-02
64	GO:0010468: regulation of gene expression	2.37E-02
65	GO:0009733: response to auxin	2.41E-02
66	GO:0009658: chloroplast organization	2.85E-02
67	GO:0046686: response to cadmium ion	3.35E-02
68	GO:0010200: response to chitin	3.40E-02
69	GO:0015979: photosynthesis	3.65E-02
70	GO:0045892: negative regulation of transcription, DNA-templated	3.82E-02
71	GO:0016042: lipid catabolic process	4.30E-02
72	GO:0009737: response to abscisic acid	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0000250: lanosterol synthase activity	0.00E+00
2	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
3	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
4	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
5	GO:0000989: transcription factor activity, transcription factor binding	1.09E-07
6	GO:0008106: alcohol dehydrogenase (NADP+) activity	8.75E-07
7	GO:0001530: lipopolysaccharide binding	3.77E-05
8	GO:0009671: nitrate:proton symporter activity	3.77E-05
9	GO:0004362: glutathione-disulfide reductase activity	9.40E-05
10	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	9.40E-05
11	GO:0050347: trans-octaprenyltranstransferase activity	9.40E-05
12	GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	9.40E-05
13	GO:0009973: adenylyl-sulfate reductase activity	9.40E-05
14	GO:1990269: RNA polymerase II C-terminal domain phosphoserine binding	9.40E-05
15	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	9.40E-05
16	GO:0001076: transcription factor activity, RNA polymerase II transcription factor binding	1.63E-04
17	GO:0008270: zinc ion binding	3.00E-04
18	GO:0016866: intramolecular transferase activity	3.24E-04
19	GO:0005253: anion channel activity	3.24E-04
20	GO:0045431: flavonol synthase activity	4.13E-04
21	GO:0005247: voltage-gated chloride channel activity	5.07E-04
22	GO:0000210: NAD+ diphosphatase activity	5.07E-04
23	GO:0016161: beta-amylase activity	6.05E-04
24	GO:0003700: transcription factor activity, sequence-specific DNA binding	7.83E-04
25	GO:0030674: protein binding, bridging	8.13E-04
26	GO:0016491: oxidoreductase activity	9.99E-04
27	GO:0019904: protein domain specific binding	1.40E-03
28	GO:0008324: cation transmembrane transporter activity	2.40E-03
29	GO:0042802: identical protein binding	2.70E-03
30	GO:0030570: pectate lyase activity	2.89E-03
31	GO:0004527: exonuclease activity	3.58E-03
32	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.51E-03
33	GO:0009055: electron carrier activity	6.39E-03
34	GO:0015238: drug transmembrane transporter activity	6.60E-03
35	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.51E-03
36	GO:0050661: NADP binding	8.23E-03
37	GO:0015293: symporter activity	9.73E-03
38	GO:0016787: hydrolase activity	1.01E-02
39	GO:0015035: protein disulfide oxidoreductase activity	1.45E-02
40	GO:0015297: antiporter activity	2.02E-02
41	GO:0046872: metal ion binding	2.07E-02
42	GO:0005215: transporter activity	2.38E-02
43	GO:0016788: hydrolase activity, acting on ester bonds	2.89E-02
44	GO:0003682: chromatin binding	2.97E-02
45	GO:0050660: flavin adenine dinucleotide binding	3.16E-02
46	GO:0052689: carboxylic ester hydrolase activity	3.57E-02
47	GO:0004871: signal transducer activity	3.91E-02
48	GO:0004519: endonuclease activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0031313: extrinsic component of endosome membrane	0.00E+00
2	GO:0031234: extrinsic component of cytoplasmic side of plasma membrane	3.77E-05
3	GO:0016593: Cdc73/Paf1 complex	3.24E-04
4	GO:0009526: plastid envelope	3.24E-04
5	GO:0034707: chloride channel complex	5.07E-04
6	GO:0005884: actin filament	1.40E-03
7	GO:0005578: proteinaceous extracellular matrix	1.67E-03
8	GO:0031012: extracellular matrix	1.67E-03
9	GO:0031969: chloroplast membrane	4.05E-03
10	GO:0005834: heterotrimeric G-protein complex	1.30E-02
11	GO:0009543: chloroplast thylakoid lumen	1.66E-02
12	GO:0005622: intracellular	1.88E-02
13	GO:0009705: plant-type vacuole membrane	2.09E-02
14	GO:0005615: extracellular space	2.26E-02
15	GO:0046658: anchored component of plasma membrane	2.55E-02
16	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.05E-02