Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G35420

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
2GO:0006399: tRNA metabolic process0.00E+00
3GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
4GO:0070125: mitochondrial translational elongation0.00E+00
5GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
6GO:2000505: regulation of energy homeostasis0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:2000042: negative regulation of double-strand break repair via homologous recombination0.00E+00
9GO:0042821: pyridoxal biosynthetic process0.00E+00
10GO:0015882: L-ascorbic acid transport0.00E+00
11GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
12GO:0006114: glycerol biosynthetic process0.00E+00
13GO:0042820: vitamin B6 catabolic process0.00E+00
14GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
15GO:0008298: intracellular mRNA localization0.00E+00
16GO:0015979: photosynthesis7.45E-15
17GO:0090391: granum assembly2.68E-08
18GO:0018298: protein-chromophore linkage1.83E-07
19GO:0010027: thylakoid membrane organization2.43E-06
20GO:1902326: positive regulation of chlorophyll biosynthetic process3.77E-06
21GO:0009642: response to light intensity7.06E-06
22GO:0006021: inositol biosynthetic process5.45E-05
23GO:0010207: photosystem II assembly5.99E-05
24GO:0009768: photosynthesis, light harvesting in photosystem I1.16E-04
25GO:0042549: photosystem II stabilization1.25E-04
26GO:0046855: inositol phosphate dephosphorylation1.25E-04
27GO:0010114: response to red light2.02E-04
28GO:0010196: nonphotochemical quenching2.24E-04
29GO:0048564: photosystem I assembly2.83E-04
30GO:0065002: intracellular protein transmembrane transport2.87E-04
31GO:0043686: co-translational protein modification2.87E-04
32GO:0043087: regulation of GTPase activity2.87E-04
33GO:0043007: maintenance of rDNA2.87E-04
34GO:0010028: xanthophyll cycle2.87E-04
35GO:0034337: RNA folding2.87E-04
36GO:0010729: positive regulation of hydrogen peroxide biosynthetic process2.87E-04
37GO:0000476: maturation of 4.5S rRNA2.87E-04
38GO:0009443: pyridoxal 5'-phosphate salvage2.87E-04
39GO:0000967: rRNA 5'-end processing2.87E-04
40GO:0043953: protein transport by the Tat complex2.87E-04
41GO:0071277: cellular response to calcium ion2.87E-04
42GO:0000481: maturation of 5S rRNA2.87E-04
43GO:0009657: plastid organization3.49E-04
44GO:0010206: photosystem II repair4.20E-04
45GO:0009658: chloroplast organization5.35E-04
46GO:0006729: tetrahydrobiopterin biosynthetic process6.30E-04
47GO:0034470: ncRNA processing6.30E-04
48GO:0006741: NADP biosynthetic process6.30E-04
49GO:0019752: carboxylic acid metabolic process6.30E-04
50GO:0006435: threonyl-tRNA aminoacylation6.30E-04
51GO:0030187: melatonin biosynthetic process6.30E-04
52GO:0006432: phenylalanyl-tRNA aminoacylation6.30E-04
53GO:0018026: peptidyl-lysine monomethylation6.30E-04
54GO:0000256: allantoin catabolic process6.30E-04
55GO:0009773: photosynthetic electron transport in photosystem I6.69E-04
56GO:0043085: positive regulation of catalytic activity6.69E-04
57GO:0015995: chlorophyll biosynthetic process7.09E-04
58GO:0016311: dephosphorylation7.57E-04
59GO:0006790: sulfur compound metabolic process7.66E-04
60GO:0055114: oxidation-reduction process9.92E-04
61GO:0071492: cellular response to UV-A1.02E-03
62GO:0005977: glycogen metabolic process1.02E-03
63GO:0019674: NAD metabolic process1.02E-03
64GO:0009405: pathogenesis1.02E-03
65GO:0010136: ureide catabolic process1.02E-03
66GO:0009637: response to blue light1.08E-03
67GO:0046854: phosphatidylinositol phosphorylation1.09E-03
68GO:0019853: L-ascorbic acid biosynthetic process1.09E-03
69GO:0034599: cellular response to oxidative stress1.14E-03
70GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.46E-03
71GO:2001141: regulation of RNA biosynthetic process1.46E-03
72GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.46E-03
73GO:0019363: pyridine nucleotide biosynthetic process1.46E-03
74GO:0006020: inositol metabolic process1.46E-03
75GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity1.46E-03
76GO:0006145: purine nucleobase catabolic process1.46E-03
77GO:0009052: pentose-phosphate shunt, non-oxidative branch1.46E-03
78GO:0042823: pyridoxal phosphate biosynthetic process1.46E-03
79GO:0046739: transport of virus in multicellular host1.46E-03
80GO:0009644: response to high light intensity1.64E-03
81GO:0055085: transmembrane transport1.81E-03
82GO:0010021: amylopectin biosynthetic process1.96E-03
83GO:0015976: carbon utilization1.96E-03
84GO:0071486: cellular response to high light intensity1.96E-03
85GO:0009765: photosynthesis, light harvesting1.96E-03
86GO:0006109: regulation of carbohydrate metabolic process1.96E-03
87GO:0015994: chlorophyll metabolic process1.96E-03
88GO:0031365: N-terminal protein amino acid modification2.50E-03
89GO:0016558: protein import into peroxisome matrix2.50E-03
90GO:0006564: L-serine biosynthetic process2.50E-03
91GO:0006662: glycerol ether metabolic process2.64E-03
92GO:0009793: embryo development ending in seed dormancy3.05E-03
93GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.08E-03
94GO:0009920: cell plate formation involved in plant-type cell wall biogenesis3.08E-03
95GO:0042793: transcription from plastid promoter3.08E-03
96GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione3.08E-03
97GO:0080167: response to karrikin3.56E-03
98GO:0010189: vitamin E biosynthetic process3.71E-03
99GO:0071470: cellular response to osmotic stress3.71E-03
100GO:0009645: response to low light intensity stimulus4.38E-03
101GO:0009231: riboflavin biosynthetic process5.08E-03
102GO:0016559: peroxisome fission5.08E-03
103GO:0030091: protein repair5.08E-03
104GO:0009704: de-etiolation5.08E-03
105GO:0032508: DNA duplex unwinding5.08E-03
106GO:0017004: cytochrome complex assembly5.82E-03
107GO:0071482: cellular response to light stimulus5.82E-03
108GO:0032544: plastid translation5.82E-03
109GO:0006413: translational initiation6.23E-03
110GO:0098656: anion transmembrane transport6.60E-03
111GO:0009821: alkaloid biosynthetic process6.60E-03
112GO:0090333: regulation of stomatal closure6.60E-03
113GO:0010218: response to far red light6.77E-03
114GO:0007568: aging7.10E-03
115GO:0006949: syncytium formation8.26E-03
116GO:0019684: photosynthesis, light reaction9.14E-03
117GO:0009089: lysine biosynthetic process via diaminopimelate9.14E-03
118GO:0006415: translational termination9.14E-03
119GO:0006352: DNA-templated transcription, initiation9.14E-03
120GO:0006006: glucose metabolic process1.10E-02
121GO:0010020: chloroplast fission1.20E-02
122GO:0019253: reductive pentose-phosphate cycle1.20E-02
123GO:0006863: purine nucleobase transport1.40E-02
124GO:0006833: water transport1.40E-02
125GO:0080147: root hair cell development1.51E-02
126GO:0019953: sexual reproduction1.62E-02
127GO:0008299: isoprenoid biosynthetic process1.62E-02
128GO:0007017: microtubule-based process1.62E-02
129GO:0048511: rhythmic process1.73E-02
130GO:0019915: lipid storage1.73E-02
131GO:0009625: response to insect1.96E-02
132GO:0006012: galactose metabolic process1.96E-02
133GO:0045454: cell redox homeostasis1.96E-02
134GO:0009831: plant-type cell wall modification involved in multidimensional cell growth1.96E-02
135GO:0006396: RNA processing2.00E-02
136GO:0009561: megagametogenesis2.08E-02
137GO:0034220: ion transmembrane transport2.33E-02
138GO:0048868: pollen tube development2.46E-02
139GO:0042752: regulation of circadian rhythm2.59E-02
140GO:0019252: starch biosynthetic process2.72E-02
141GO:0008654: phospholipid biosynthetic process2.72E-02
142GO:0009791: post-embryonic development2.72E-02
143GO:0006810: transport2.78E-02
144GO:0006635: fatty acid beta-oxidation2.86E-02
145GO:0002229: defense response to oomycetes2.86E-02
146GO:0010193: response to ozone2.86E-02
147GO:0016032: viral process3.00E-02
148GO:0019761: glucosinolate biosynthetic process3.00E-02
149GO:0046686: response to cadmium ion3.06E-02
150GO:0009828: plant-type cell wall loosening3.28E-02
151GO:0009567: double fertilization forming a zygote and endosperm3.28E-02
152GO:0007623: circadian rhythm3.35E-02
153GO:0009627: systemic acquired resistance4.02E-02
154GO:0042128: nitrate assimilation4.02E-02
155GO:0009817: defense response to fungus, incompatible interaction4.49E-02
156GO:0009735: response to cytokinin4.65E-02
157GO:0009407: toxin catabolic process4.81E-02
158GO:0006811: ion transport4.81E-02
RankGO TermAdjusted P value
1GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0050281: serine-glyoxylate transaminase activity0.00E+00
4GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
5GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
6GO:0043136: glycerol-3-phosphatase activity0.00E+00
7GO:0000121: glycerol-1-phosphatase activity0.00E+00
8GO:0010349: L-galactose dehydrogenase activity0.00E+00
9GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
10GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
11GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
12GO:0004760: serine-pyruvate transaminase activity0.00E+00
13GO:0042623: ATPase activity, coupled0.00E+00
14GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
15GO:0010276: phytol kinase activity0.00E+00
16GO:0015229: L-ascorbic acid transporter activity0.00E+00
17GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
18GO:0016168: chlorophyll binding2.41E-09
19GO:0052832: inositol monophosphate 3-phosphatase activity3.77E-06
20GO:0008934: inositol monophosphate 1-phosphatase activity3.77E-06
21GO:0052833: inositol monophosphate 4-phosphatase activity3.77E-06
22GO:0022891: substrate-specific transmembrane transporter activity7.94E-06
23GO:0070402: NADPH binding1.35E-05
24GO:0043495: protein anchor5.45E-05
25GO:0031409: pigment binding8.51E-05
26GO:0004462: lactoylglutathione lyase activity1.25E-04
27GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.71E-04
28GO:0019899: enzyme binding2.24E-04
29GO:0004033: aldo-keto reductase (NADP) activity2.83E-04
30GO:0042736: NADH kinase activity2.87E-04
31GO:0010347: L-galactose-1-phosphate phosphatase activity2.87E-04
32GO:0016784: 3-mercaptopyruvate sulfurtransferase activity2.87E-04
33GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity2.87E-04
34GO:0042586: peptide deformylase activity2.87E-04
35GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity2.87E-04
36GO:0008047: enzyme activator activity5.80E-04
37GO:0047746: chlorophyllase activity6.30E-04
38GO:0009977: proton motive force dependent protein transmembrane transporter activity6.30E-04
39GO:0004617: phosphoglycerate dehydrogenase activity6.30E-04
40GO:0004826: phenylalanine-tRNA ligase activity6.30E-04
41GO:0004829: threonine-tRNA ligase activity6.30E-04
42GO:0019172: glyoxalase III activity6.30E-04
43GO:0019156: isoamylase activity6.30E-04
44GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.30E-04
45GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase6.30E-04
46GO:0031072: heat shock protein binding8.67E-04
47GO:0030267: glyoxylate reductase (NADP) activity1.02E-03
48GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.02E-03
49GO:0004148: dihydrolipoyl dehydrogenase activity1.02E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.02E-03
51GO:0005528: FK506 binding1.34E-03
52GO:0004792: thiosulfate sulfurtransferase activity1.46E-03
53GO:0016851: magnesium chelatase activity1.46E-03
54GO:0016149: translation release factor activity, codon specific1.46E-03
55GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.81E-03
56GO:0051287: NAD binding1.89E-03
57GO:0016279: protein-lysine N-methyltransferase activity1.96E-03
58GO:0001053: plastid sigma factor activity1.96E-03
59GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.96E-03
60GO:0008453: alanine-glyoxylate transaminase activity1.96E-03
61GO:0004045: aminoacyl-tRNA hydrolase activity1.96E-03
62GO:0016987: sigma factor activity1.96E-03
63GO:0047134: protein-disulfide reductase activity2.27E-03
64GO:0004791: thioredoxin-disulfide reductase activity2.84E-03
65GO:0016853: isomerase activity2.84E-03
66GO:0004605: phosphatidate cytidylyltransferase activity3.08E-03
67GO:0000293: ferric-chelate reductase activity3.08E-03
68GO:0004556: alpha-amylase activity3.08E-03
69GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.71E-03
70GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.71E-03
71GO:0004017: adenylate kinase activity3.71E-03
72GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity3.71E-03
73GO:0019843: rRNA binding4.52E-03
74GO:0008135: translation factor activity, RNA binding5.82E-03
75GO:0003951: NAD+ kinase activity5.82E-03
76GO:0003747: translation release factor activity6.60E-03
77GO:0016844: strictosidine synthase activity7.41E-03
78GO:0003746: translation elongation factor activity7.78E-03
79GO:0003993: acid phosphatase activity8.14E-03
80GO:0005089: Rho guanyl-nucleotide exchange factor activity9.14E-03
81GO:0042802: identical protein binding9.25E-03
82GO:0000049: tRNA binding1.01E-02
83GO:0004089: carbonate dehydratase activity1.10E-02
84GO:0008081: phosphoric diester hydrolase activity1.10E-02
85GO:0005315: inorganic phosphate transmembrane transporter activity1.10E-02
86GO:0005198: structural molecule activity1.13E-02
87GO:0046872: metal ion binding1.49E-02
88GO:0004857: enzyme inhibitor activity1.51E-02
89GO:0031625: ubiquitin protein ligase binding1.51E-02
90GO:0005345: purine nucleobase transmembrane transporter activity1.62E-02
91GO:0004176: ATP-dependent peptidase activity1.73E-02
92GO:0051082: unfolded protein binding1.94E-02
93GO:0015035: protein disulfide oxidoreductase activity2.00E-02
94GO:0003727: single-stranded RNA binding2.08E-02
95GO:0008514: organic anion transmembrane transporter activity2.08E-02
96GO:0003756: protein disulfide isomerase activity2.08E-02
97GO:0016491: oxidoreductase activity2.31E-02
98GO:0008080: N-acetyltransferase activity2.46E-02
99GO:0003924: GTPase activity2.56E-02
100GO:0048038: quinone binding2.86E-02
101GO:0016597: amino acid binding3.57E-02
102GO:0015250: water channel activity3.72E-02
103GO:0003743: translation initiation factor activity3.91E-02
104GO:0005096: GTPase activator activity4.65E-02
105GO:0030145: manganese ion binding4.97E-02
106GO:0050897: cobalt ion binding4.97E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0010368: chloroplast isoamylase complex0.00E+00
4GO:0009515: granal stacked thylakoid0.00E+00
5GO:0009507: chloroplast4.90E-63
6GO:0009535: chloroplast thylakoid membrane1.25E-43
7GO:0009534: chloroplast thylakoid2.55E-30
8GO:0009570: chloroplast stroma1.89E-22
9GO:0009941: chloroplast envelope3.71E-16
10GO:0009543: chloroplast thylakoid lumen2.52E-15
11GO:0009579: thylakoid7.45E-13
12GO:0009523: photosystem II3.50E-10
13GO:0031977: thylakoid lumen2.52E-08
14GO:0010287: plastoglobule6.67E-07
15GO:0030095: chloroplast photosystem II1.60E-06
16GO:0009538: photosystem I reaction center7.06E-06
17GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.42E-05
18GO:0009654: photosystem II oxygen evolving complex1.16E-04
19GO:0031361: integral component of thylakoid membrane2.87E-04
20GO:0009782: photosystem I antenna complex2.87E-04
21GO:0019898: extrinsic component of membrane3.27E-04
22GO:0000427: plastid-encoded plastid RNA polymerase complex6.30E-04
23GO:0009508: plastid chromosome8.67E-04
24GO:0010007: magnesium chelatase complex1.02E-03
25GO:0033281: TAT protein transport complex1.02E-03
26GO:0030076: light-harvesting complex1.09E-03
27GO:0042651: thylakoid membrane1.47E-03
28GO:0030286: dynein complex1.96E-03
29GO:0009522: photosystem I2.84E-03
30GO:0009295: nucleoid4.19E-03
31GO:0005759: mitochondrial matrix6.05E-03
32GO:0012511: monolayer-surrounded lipid storage body9.14E-03
33GO:0032040: small-subunit processome1.01E-02
34GO:0009574: preprophase band1.10E-02
35GO:0031969: chloroplast membrane1.56E-02
36GO:0016020: membrane1.70E-02
37GO:0009706: chloroplast inner membrane1.94E-02
38GO:0005623: cell2.49E-02
39GO:0005778: peroxisomal membrane3.42E-02
40GO:0030529: intracellular ribonucleoprotein complex3.72E-02
41GO:0009707: chloroplast outer membrane4.49E-02
42GO:0005840: ribosome4.63E-02
43GO:0015934: large ribosomal subunit4.97E-02
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Gene type



Gene DE type