Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G35340

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:1901965: endoplasmic reticulum to chloroplast transport0.00E+00
4GO:0008298: intracellular mRNA localization0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
7GO:1901918: negative regulation of exoribonuclease activity0.00E+00
8GO:0098586: cellular response to virus0.00E+00
9GO:0017009: protein-phycocyanobilin linkage0.00E+00
10GO:0042821: pyridoxal biosynthetic process0.00E+00
11GO:0006021: inositol biosynthetic process2.72E-05
12GO:0018298: protein-chromophore linkage2.76E-05
13GO:0046855: inositol phosphate dephosphorylation6.48E-05
14GO:0048564: photosystem I assembly1.53E-04
15GO:0071277: cellular response to calcium ion1.91E-04
16GO:0009443: pyridoxal 5'-phosphate salvage1.91E-04
17GO:0031426: polycistronic mRNA processing1.91E-04
18GO:1904966: positive regulation of vitamin E biosynthetic process1.91E-04
19GO:1990052: ER to chloroplast lipid transport1.91E-04
20GO:1904964: positive regulation of phytol biosynthetic process1.91E-04
21GO:0006436: tryptophanyl-tRNA aminoacylation1.91E-04
22GO:0010729: positive regulation of hydrogen peroxide biosynthetic process1.91E-04
23GO:0071482: cellular response to light stimulus1.91E-04
24GO:0010362: negative regulation of anion channel activity by blue light1.91E-04
25GO:0019646: aerobic electron transport chain1.91E-04
26GO:0009657: plastid organization1.91E-04
27GO:0015979: photosynthesis3.44E-04
28GO:0080005: photosystem stoichiometry adjustment4.29E-04
29GO:0048314: embryo sac morphogenesis4.29E-04
30GO:0030187: melatonin biosynthetic process4.29E-04
31GO:0000256: allantoin catabolic process4.29E-04
32GO:0006568: tryptophan metabolic process4.29E-04
33GO:0046741: transport of virus in host, tissue to tissue4.29E-04
34GO:1902326: positive regulation of chlorophyll biosynthetic process4.29E-04
35GO:0034755: iron ion transmembrane transport4.29E-04
36GO:0006435: threonyl-tRNA aminoacylation4.29E-04
37GO:0006790: sulfur compound metabolic process4.34E-04
38GO:0010207: photosystem II assembly5.55E-04
39GO:0046854: phosphatidylinositol phosphorylation6.22E-04
40GO:1901672: positive regulation of systemic acquired resistance6.99E-04
41GO:0010136: ureide catabolic process6.99E-04
42GO:0051604: protein maturation6.99E-04
43GO:0009405: pathogenesis6.99E-04
44GO:0006013: mannose metabolic process6.99E-04
45GO:0002230: positive regulation of defense response to virus by host6.99E-04
46GO:0009644: response to high light intensity7.92E-04
47GO:0009052: pentose-phosphate shunt, non-oxidative branch9.97E-04
48GO:0046739: transport of virus in multicellular host9.97E-04
49GO:0043572: plastid fission9.97E-04
50GO:2001141: regulation of RNA biosynthetic process9.97E-04
51GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly9.97E-04
52GO:0006020: inositol metabolic process9.97E-04
53GO:0071484: cellular response to light intensity9.97E-04
54GO:0010239: chloroplast mRNA processing9.97E-04
55GO:0006145: purine nucleobase catabolic process9.97E-04
56GO:0009902: chloroplast relocation1.32E-03
57GO:0031935: regulation of chromatin silencing1.32E-03
58GO:0009765: photosynthesis, light harvesting1.32E-03
59GO:0016558: protein import into peroxisome matrix1.68E-03
60GO:0010117: photoprotection1.68E-03
61GO:0006282: regulation of DNA repair1.68E-03
62GO:0016123: xanthophyll biosynthetic process1.68E-03
63GO:0034052: positive regulation of plant-type hypersensitive response1.68E-03
64GO:0016120: carotene biosynthetic process1.68E-03
65GO:0009791: post-embryonic development1.71E-03
66GO:0006655: phosphatidylglycerol biosynthetic process2.07E-03
67GO:0010190: cytochrome b6f complex assembly2.07E-03
68GO:0009643: photosynthetic acclimation2.07E-03
69GO:0042549: photosystem II stabilization2.07E-03
70GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.07E-03
71GO:0042372: phylloquinone biosynthetic process2.49E-03
72GO:0010189: vitamin E biosynthetic process2.49E-03
73GO:0009816: defense response to bacterium, incompatible interaction2.78E-03
74GO:0009645: response to low light intensity stimulus2.93E-03
75GO:0048528: post-embryonic root development2.93E-03
76GO:1900056: negative regulation of leaf senescence2.93E-03
77GO:0006413: translational initiation2.95E-03
78GO:0009704: de-etiolation3.40E-03
79GO:0009642: response to light intensity3.40E-03
80GO:0009637: response to blue light4.33E-03
81GO:0009821: alkaloid biosynthetic process4.40E-03
82GO:0090305: nucleic acid phosphodiester bond hydrolysis4.40E-03
83GO:0090333: regulation of stomatal closure4.40E-03
84GO:0048507: meristem development4.40E-03
85GO:1900426: positive regulation of defense response to bacterium4.93E-03
86GO:0009638: phototropism4.93E-03
87GO:0010380: regulation of chlorophyll biosynthetic process4.93E-03
88GO:0045036: protein targeting to chloroplast5.48E-03
89GO:0010114: response to red light5.57E-03
90GO:0009658: chloroplast organization5.61E-03
91GO:0006415: translational termination6.06E-03
92GO:0006879: cellular iron ion homeostasis6.06E-03
93GO:0006352: DNA-templated transcription, initiation6.06E-03
94GO:0009773: photosynthetic electron transport in photosystem I6.06E-03
95GO:0016024: CDP-diacylglycerol biosynthetic process6.66E-03
96GO:0009767: photosynthetic electron transport chain7.28E-03
97GO:0010224: response to UV-B7.77E-03
98GO:0010020: chloroplast fission7.91E-03
99GO:0019853: L-ascorbic acid biosynthetic process8.57E-03
100GO:0055114: oxidation-reduction process8.66E-03
101GO:0006863: purine nucleobase transport9.25E-03
102GO:0009768: photosynthesis, light harvesting in photosystem I1.07E-02
103GO:0051302: regulation of cell division1.07E-02
104GO:0008299: isoprenoid biosynthetic process1.07E-02
105GO:0006418: tRNA aminoacylation for protein translation1.07E-02
106GO:0007017: microtubule-based process1.07E-02
107GO:0006396: RNA processing1.10E-02
108GO:0051321: meiotic cell cycle1.14E-02
109GO:0016117: carotenoid biosynthetic process1.45E-02
110GO:0010118: stomatal movement1.53E-02
111GO:0008654: phospholipid biosynthetic process1.79E-02
112GO:0007623: circadian rhythm1.86E-02
113GO:0010193: response to ozone1.88E-02
114GO:0000302: response to reactive oxygen species1.88E-02
115GO:0006635: fatty acid beta-oxidation1.88E-02
116GO:0002229: defense response to oomycetes1.88E-02
117GO:0031047: gene silencing by RNA1.97E-02
118GO:0016032: viral process1.97E-02
119GO:0009793: embryo development ending in seed dormancy2.20E-02
120GO:0010468: regulation of gene expression2.22E-02
121GO:0051607: defense response to virus2.34E-02
122GO:0010027: thylakoid membrane organization2.44E-02
123GO:0042128: nitrate assimilation2.64E-02
124GO:0015995: chlorophyll biosynthetic process2.74E-02
125GO:0048481: plant ovule development2.95E-02
126GO:0009817: defense response to fungus, incompatible interaction2.95E-02
127GO:0000160: phosphorelay signal transduction system3.05E-02
128GO:0009813: flavonoid biosynthetic process3.05E-02
129GO:0007568: aging3.27E-02
130GO:0009910: negative regulation of flower development3.27E-02
131GO:0055085: transmembrane transport3.36E-02
132GO:0000724: double-strand break repair via homologous recombination3.38E-02
133GO:0006457: protein folding3.45E-02
134GO:0046686: response to cadmium ion3.49E-02
135GO:0009853: photorespiration3.49E-02
136GO:0080167: response to karrikin3.56E-02
137GO:0046777: protein autophosphorylation3.81E-02
138GO:0031347: regulation of defense response4.78E-02
RankGO TermAdjusted P value
1GO:0010276: phytol kinase activity0.00E+00
2GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
3GO:0050281: serine-glyoxylate transaminase activity0.00E+00
4GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
5GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
6GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
7GO:0045435: lycopene epsilon cyclase activity0.00E+00
8GO:0004760: serine-pyruvate transaminase activity0.00E+00
9GO:0042623: ATPase activity, coupled0.00E+00
10GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
11GO:0052832: inositol monophosphate 3-phosphatase activity1.74E-06
12GO:0008934: inositol monophosphate 1-phosphatase activity1.74E-06
13GO:0052833: inositol monophosphate 4-phosphatase activity1.74E-06
14GO:0070402: NADPH binding6.40E-06
15GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.02E-05
16GO:0008080: N-acetyltransferase activity1.19E-04
17GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity1.91E-04
18GO:0004830: tryptophan-tRNA ligase activity1.91E-04
19GO:0030941: chloroplast targeting sequence binding1.91E-04
20GO:0010347: L-galactose-1-phosphate phosphatase activity1.91E-04
21GO:0004425: indole-3-glycerol-phosphate synthase activity1.91E-04
22GO:0016168: chlorophyll binding2.91E-04
23GO:0004829: threonine-tRNA ligase activity4.29E-04
24GO:0019200: carbohydrate kinase activity4.29E-04
25GO:0016491: oxidoreductase activity6.88E-04
26GO:0003955: NAD(P)H dehydrogenase (quinone) activity6.99E-04
27GO:0004751: ribose-5-phosphate isomerase activity6.99E-04
28GO:0004148: dihydrolipoyl dehydrogenase activity6.99E-04
29GO:0005528: FK506 binding7.65E-04
30GO:0016851: magnesium chelatase activity9.97E-04
31GO:0016149: translation release factor activity, codon specific9.97E-04
32GO:0009882: blue light photoreceptor activity9.97E-04
33GO:0048027: mRNA 5'-UTR binding9.97E-04
34GO:0022891: substrate-specific transmembrane transporter activity1.09E-03
35GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity1.32E-03
36GO:0001053: plastid sigma factor activity1.32E-03
37GO:0005319: lipid transporter activity1.32E-03
38GO:0051861: glycolipid binding1.32E-03
39GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.32E-03
40GO:0008453: alanine-glyoxylate transaminase activity1.32E-03
41GO:0016987: sigma factor activity1.32E-03
42GO:0043495: protein anchor1.32E-03
43GO:0016853: isomerase activity1.59E-03
44GO:0010181: FMN binding1.59E-03
45GO:0004605: phosphatidate cytidylyltransferase activity2.07E-03
46GO:0004559: alpha-mannosidase activity2.49E-03
47GO:0009055: electron carrier activity2.92E-03
48GO:0019899: enzyme binding2.93E-03
49GO:0004033: aldo-keto reductase (NADP) activity3.40E-03
50GO:0003747: translation release factor activity4.40E-03
51GO:0045309: protein phosphorylated amino acid binding4.93E-03
52GO:0016844: strictosidine synthase activity4.93E-03
53GO:0005381: iron ion transmembrane transporter activity4.93E-03
54GO:0051537: 2 iron, 2 sulfur cluster binding6.02E-03
55GO:0019904: protein domain specific binding6.06E-03
56GO:0003755: peptidyl-prolyl cis-trans isomerase activity6.50E-03
57GO:0000155: phosphorelay sensor kinase activity7.28E-03
58GO:0031625: ubiquitin protein ligase binding8.31E-03
59GO:0031409: pigment binding9.25E-03
60GO:0003954: NADH dehydrogenase activity9.94E-03
61GO:0005345: purine nucleobase transmembrane transporter activity1.07E-02
62GO:0003727: single-stranded RNA binding1.37E-02
63GO:0004812: aminoacyl-tRNA ligase activity1.45E-02
64GO:0004402: histone acetyltransferase activity1.53E-02
65GO:0048038: quinone binding1.88E-02
66GO:0004518: nuclease activity1.97E-02
67GO:0016887: ATPase activity2.11E-02
68GO:0003743: translation initiation factor activity2.17E-02
69GO:0042802: identical protein binding2.36E-02
70GO:0008168: methyltransferase activity2.77E-02
71GO:0008236: serine-type peptidase activity2.84E-02
72GO:0050897: cobalt ion binding3.27E-02
73GO:0030145: manganese ion binding3.27E-02
74GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.49E-02
75GO:0008233: peptidase activity3.50E-02
76GO:0061630: ubiquitin protein ligase activity3.74E-02
77GO:0043621: protein self-association4.41E-02
RankGO TermAdjusted P value
1GO:0009507: chloroplast2.77E-42
2GO:0009535: chloroplast thylakoid membrane7.17E-15
3GO:0009570: chloroplast stroma7.69E-10
4GO:0009543: chloroplast thylakoid lumen3.95E-09
5GO:0009534: chloroplast thylakoid1.43E-07
6GO:0009941: chloroplast envelope1.99E-07
7GO:0031969: chloroplast membrane3.49E-05
8GO:0031977: thylakoid lumen6.14E-05
9GO:0009523: photosystem II1.46E-04
10GO:0009782: photosystem I antenna complex1.91E-04
11GO:0031304: intrinsic component of mitochondrial inner membrane4.29E-04
12GO:0009579: thylakoid4.97E-04
13GO:0030095: chloroplast photosystem II5.55E-04
14GO:0010007: magnesium chelatase complex6.99E-04
15GO:0009654: photosystem II oxygen evolving complex8.41E-04
16GO:0009526: plastid envelope1.32E-03
17GO:0030286: dynein complex1.32E-03
18GO:0055035: plastid thylakoid membrane1.68E-03
19GO:0019898: extrinsic component of membrane1.71E-03
20GO:0010287: plastoglobule2.00E-03
21GO:0005778: peroxisomal membrane2.34E-03
22GO:0031359: integral component of chloroplast outer membrane2.93E-03
23GO:0009707: chloroplast outer membrane3.42E-03
24GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.40E-03
25GO:0042644: chloroplast nucleoid4.40E-03
26GO:0009508: plastid chromosome7.28E-03
27GO:0030076: light-harvesting complex8.57E-03
28GO:0005875: microtubule associated complex9.25E-03
29GO:0042651: thylakoid membrane1.07E-02
30GO:0009295: nucleoid2.25E-02
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Gene type



Gene DE type