Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G33560

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015746: citrate transport0.00E+00
2GO:0030149: sphingolipid catabolic process0.00E+00
3GO:0023052: signaling0.00E+00
4GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
5GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
6GO:0001881: receptor recycling0.00E+00
7GO:0006592: ornithine biosynthetic process0.00E+00
8GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
9GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
10GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c1.85E-04
11GO:0010044: response to aluminum ion1.85E-04
12GO:0046686: response to cadmium ion2.19E-04
13GO:0031540: regulation of anthocyanin biosynthetic process2.35E-04
14GO:0006102: isocitrate metabolic process2.35E-04
15GO:1990022: RNA polymerase III complex localization to nucleus2.53E-04
16GO:0044376: RNA polymerase II complex import to nucleus2.53E-04
17GO:0010265: SCF complex assembly2.53E-04
18GO:0015798: myo-inositol transport2.53E-04
19GO:1990542: mitochondrial transmembrane transport2.53E-04
20GO:0006436: tryptophanyl-tRNA aminoacylation2.53E-04
21GO:0051603: proteolysis involved in cellular protein catabolic process2.61E-04
22GO:0006096: glycolytic process3.24E-04
23GO:0006511: ubiquitin-dependent protein catabolic process3.78E-04
24GO:0006695: cholesterol biosynthetic process5.59E-04
25GO:0006101: citrate metabolic process5.59E-04
26GO:0019752: carboxylic acid metabolic process5.59E-04
27GO:0051788: response to misfolded protein5.59E-04
28GO:0097054: L-glutamate biosynthetic process5.59E-04
29GO:1990069: stomatal opening5.59E-04
30GO:0019222: regulation of metabolic process5.59E-04
31GO:0002237: response to molecule of bacterial origin8.19E-04
32GO:0046168: glycerol-3-phosphate catabolic process9.07E-04
33GO:0008333: endosome to lysosome transport9.07E-04
34GO:0045793: positive regulation of cell size9.07E-04
35GO:0006099: tricarboxylic acid cycle9.12E-04
36GO:0006487: protein N-linked glycosylation1.12E-03
37GO:0006537: glutamate biosynthetic process1.29E-03
38GO:0009647: skotomorphogenesis1.29E-03
39GO:0006072: glycerol-3-phosphate metabolic process1.29E-03
40GO:0009743: response to carbohydrate1.29E-03
41GO:0006168: adenine salvage1.29E-03
42GO:0071786: endoplasmic reticulum tubular network organization1.29E-03
43GO:0006882: cellular zinc ion homeostasis1.29E-03
44GO:0001676: long-chain fatty acid metabolic process1.29E-03
45GO:0032877: positive regulation of DNA endoreduplication1.29E-03
46GO:0046836: glycolipid transport1.29E-03
47GO:0006166: purine ribonucleoside salvage1.29E-03
48GO:0051365: cellular response to potassium ion starvation1.73E-03
49GO:0048442: sepal development1.73E-03
50GO:0071219: cellular response to molecule of bacterial origin1.73E-03
51GO:0010363: regulation of plant-type hypersensitive response1.73E-03
52GO:0006621: protein retention in ER lumen1.73E-03
53GO:0080142: regulation of salicylic acid biosynthetic process1.73E-03
54GO:0019676: ammonia assimilation cycle1.73E-03
55GO:0051781: positive regulation of cell division1.73E-03
56GO:0055114: oxidation-reduction process1.97E-03
57GO:0045116: protein neddylation2.21E-03
58GO:2000762: regulation of phenylpropanoid metabolic process2.21E-03
59GO:0006564: L-serine biosynthetic process2.21E-03
60GO:0036065: fucosylation2.21E-03
61GO:0006097: glyoxylate cycle2.21E-03
62GO:1902183: regulation of shoot apical meristem development2.21E-03
63GO:0044209: AMP salvage2.21E-03
64GO:0006623: protein targeting to vacuole2.54E-03
65GO:0009735: response to cytokinin2.62E-03
66GO:0043248: proteasome assembly2.72E-03
67GO:1901001: negative regulation of response to salt stress3.27E-03
68GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.27E-03
69GO:0009612: response to mechanical stimulus3.27E-03
70GO:0006694: steroid biosynthetic process3.27E-03
71GO:0006914: autophagy3.29E-03
72GO:0048528: post-embryonic root development3.86E-03
73GO:0071446: cellular response to salicylic acid stimulus3.86E-03
74GO:1900056: negative regulation of leaf senescence3.86E-03
75GO:0016126: sterol biosynthetic process3.92E-03
76GO:0009627: systemic acquired resistance4.38E-03
77GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.48E-03
78GO:0009642: response to light intensity4.48E-03
79GO:0009690: cytokinin metabolic process4.48E-03
80GO:0050821: protein stabilization4.48E-03
81GO:0048658: anther wall tapetum development4.48E-03
82GO:0055085: transmembrane transport4.66E-03
83GO:0009751: response to salicylic acid4.76E-03
84GO:0006526: arginine biosynthetic process5.13E-03
85GO:0010204: defense response signaling pathway, resistance gene-independent5.13E-03
86GO:0007389: pattern specification process5.13E-03
87GO:0098656: anion transmembrane transport5.81E-03
88GO:0009821: alkaloid biosynthetic process5.81E-03
89GO:0009245: lipid A biosynthetic process5.81E-03
90GO:0080144: amino acid homeostasis5.81E-03
91GO:0006098: pentose-phosphate shunt5.81E-03
92GO:0010112: regulation of systemic acquired resistance5.81E-03
93GO:0006754: ATP biosynthetic process5.81E-03
94GO:0048589: developmental growth5.81E-03
95GO:0009060: aerobic respiration5.81E-03
96GO:0015780: nucleotide-sugar transport5.81E-03
97GO:0071577: zinc II ion transmembrane transport6.52E-03
98GO:1900426: positive regulation of defense response to bacterium6.52E-03
99GO:0006995: cellular response to nitrogen starvation7.26E-03
100GO:0006032: chitin catabolic process7.26E-03
101GO:0048441: petal development7.26E-03
102GO:0043069: negative regulation of programmed cell death7.26E-03
103GO:0048829: root cap development7.26E-03
104GO:0006631: fatty acid metabolic process7.70E-03
105GO:0009698: phenylpropanoid metabolic process8.04E-03
106GO:0072593: reactive oxygen species metabolic process8.04E-03
107GO:0000272: polysaccharide catabolic process8.04E-03
108GO:0016485: protein processing8.04E-03
109GO:0008361: regulation of cell size8.83E-03
110GO:0006820: anion transport8.83E-03
111GO:0016925: protein sumoylation8.83E-03
112GO:0006829: zinc II ion transport9.66E-03
113GO:0006006: glucose metabolic process9.66E-03
114GO:0050826: response to freezing9.66E-03
115GO:0006094: gluconeogenesis9.66E-03
116GO:0006855: drug transmembrane transport9.76E-03
117GO:0007034: vacuolar transport1.05E-02
118GO:0009969: xyloglucan biosynthetic process1.14E-02
119GO:0090351: seedling development1.14E-02
120GO:0006071: glycerol metabolic process1.23E-02
121GO:0009651: response to salt stress1.27E-02
122GO:0009116: nucleoside metabolic process1.32E-02
123GO:0006289: nucleotide-excision repair1.32E-02
124GO:0006418: tRNA aminoacylation for protein translation1.42E-02
125GO:0009695: jasmonic acid biosynthetic process1.42E-02
126GO:0031408: oxylipin biosynthetic process1.52E-02
127GO:0015992: proton transport1.52E-02
128GO:0045454: cell redox homeostasis1.56E-02
129GO:0035428: hexose transmembrane transport1.62E-02
130GO:0019748: secondary metabolic process1.62E-02
131GO:0009409: response to cold1.77E-02
132GO:0010584: pollen exine formation1.83E-02
133GO:0006284: base-excision repair1.83E-02
134GO:0042147: retrograde transport, endosome to Golgi1.94E-02
135GO:0015991: ATP hydrolysis coupled proton transport2.05E-02
136GO:0042631: cellular response to water deprivation2.05E-02
137GO:0080022: primary root development2.05E-02
138GO:0034220: ion transmembrane transport2.05E-02
139GO:0000413: protein peptidyl-prolyl isomerization2.05E-02
140GO:0010051: xylem and phloem pattern formation2.05E-02
141GO:0010118: stomatal movement2.05E-02
142GO:0006520: cellular amino acid metabolic process2.16E-02
143GO:0010154: fruit development2.16E-02
144GO:0046323: glucose import2.16E-02
145GO:0015986: ATP synthesis coupled proton transport2.27E-02
146GO:0048825: cotyledon development2.39E-02
147GO:0010183: pollen tube guidance2.39E-02
148GO:0009749: response to glucose2.39E-02
149GO:0002229: defense response to oomycetes2.51E-02
150GO:0010193: response to ozone2.51E-02
151GO:0016132: brassinosteroid biosynthetic process2.51E-02
152GO:0016036: cellular response to phosphate starvation2.60E-02
153GO:0030163: protein catabolic process2.75E-02
154GO:0007623: circadian rhythm2.79E-02
155GO:0010150: leaf senescence2.79E-02
156GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.12E-02
157GO:0000910: cytokinesis3.13E-02
158GO:0009615: response to virus3.26E-02
159GO:0009617: response to bacterium3.33E-02
160GO:0006979: response to oxidative stress3.36E-02
161GO:0006950: response to stress3.66E-02
162GO:0009817: defense response to fungus, incompatible interaction3.93E-02
163GO:0009832: plant-type cell wall biogenesis4.08E-02
164GO:0009826: unidimensional cell growth4.14E-02
165GO:0010119: regulation of stomatal movement4.36E-02
166GO:0009631: cold acclimation4.36E-02
167GO:0010043: response to zinc ion4.36E-02
168GO:0009853: photorespiration4.66E-02
169GO:0045087: innate immune response4.66E-02
170GO:0015031: protein transport4.69E-02
RankGO TermAdjusted P value
1GO:0016881: acid-amino acid ligase activity0.00E+00
2GO:0008117: sphinganine-1-phosphate aldolase activity0.00E+00
3GO:0010290: chlorophyll catabolite transmembrane transporter activity0.00E+00
4GO:0015930: glutamate synthase activity0.00E+00
5GO:0052873: FMN reductase (NADPH) activity0.00E+00
6GO:0009918: sterol delta7 reductase activity0.00E+00
7GO:0015431: glutathione S-conjugate-exporting ATPase activity0.00E+00
8GO:0003796: lysozyme activity0.00E+00
9GO:0005212: structural constituent of eye lens0.00E+00
10GO:0008777: acetylornithine deacetylase activity0.00E+00
11GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
12GO:0008752: FMN reductase activity0.00E+00
13GO:0047598: 7-dehydrocholesterol reductase activity0.00E+00
14GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
15GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
16GO:0004298: threonine-type endopeptidase activity1.09E-09
17GO:0008233: peptidase activity9.11E-07
18GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity7.01E-05
19GO:0051287: NAD binding2.06E-04
20GO:0015137: citrate transmembrane transporter activity2.53E-04
21GO:0000824: inositol tetrakisphosphate 3-kinase activity2.53E-04
22GO:0047326: inositol tetrakisphosphate 5-kinase activity2.53E-04
23GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.53E-04
24GO:0004321: fatty-acyl-CoA synthase activity2.53E-04
25GO:0019786: Atg8-specific protease activity2.53E-04
26GO:0004830: tryptophan-tRNA ligase activity2.53E-04
27GO:0016041: glutamate synthase (ferredoxin) activity2.53E-04
28GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.53E-04
29GO:0003994: aconitate hydratase activity5.59E-04
30GO:0018708: thiol S-methyltransferase activity5.59E-04
31GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity5.59E-04
32GO:0004775: succinate-CoA ligase (ADP-forming) activity5.59E-04
33GO:0019779: Atg8 activating enzyme activity5.59E-04
34GO:0005366: myo-inositol:proton symporter activity5.59E-04
35GO:0008517: folic acid transporter activity5.59E-04
36GO:0004776: succinate-CoA ligase (GDP-forming) activity5.59E-04
37GO:0004634: phosphopyruvate hydratase activity5.59E-04
38GO:0004618: phosphoglycerate kinase activity5.59E-04
39GO:0019781: NEDD8 activating enzyme activity5.59E-04
40GO:0004617: phosphoglycerate dehydrogenase activity5.59E-04
41GO:0008559: xenobiotic-transporting ATPase activity5.62E-04
42GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity9.07E-04
43GO:0003955: NAD(P)H dehydrogenase (quinone) activity9.07E-04
44GO:0004557: alpha-galactosidase activity9.07E-04
45GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity9.07E-04
46GO:0052692: raffinose alpha-galactosidase activity9.07E-04
47GO:0017089: glycolipid transporter activity1.29E-03
48GO:0003999: adenine phosphoribosyltransferase activity1.29E-03
49GO:0004449: isocitrate dehydrogenase (NAD+) activity1.29E-03
50GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.29E-03
51GO:0035198: miRNA binding1.29E-03
52GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.29E-03
53GO:0017077: oxidative phosphorylation uncoupler activity1.29E-03
54GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.43E-03
55GO:0070628: proteasome binding1.73E-03
56GO:0046923: ER retention sequence binding1.73E-03
57GO:0004576: oligosaccharyl transferase activity1.73E-03
58GO:0019776: Atg8 ligase activity1.73E-03
59GO:0010011: auxin binding1.73E-03
60GO:0051861: glycolipid binding1.73E-03
61GO:0008641: small protein activating enzyme activity2.21E-03
62GO:0004040: amidase activity2.21E-03
63GO:0031386: protein tag2.21E-03
64GO:0051538: 3 iron, 4 sulfur cluster binding2.21E-03
65GO:0046873: metal ion transmembrane transporter activity2.21E-03
66GO:0016887: ATPase activity2.42E-03
67GO:0004872: receptor activity2.54E-03
68GO:0004332: fructose-bisphosphate aldolase activity2.72E-03
69GO:0031593: polyubiquitin binding2.72E-03
70GO:0031177: phosphopantetheine binding2.72E-03
71GO:0000035: acyl binding3.27E-03
72GO:0102391: decanoate--CoA ligase activity3.27E-03
73GO:0004602: glutathione peroxidase activity3.27E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity3.27E-03
75GO:0051920: peroxiredoxin activity3.27E-03
76GO:0008237: metallopeptidase activity3.49E-03
77GO:0016831: carboxy-lyase activity3.86E-03
78GO:0005338: nucleotide-sugar transmembrane transporter activity3.86E-03
79GO:0008121: ubiquinol-cytochrome-c reductase activity3.86E-03
80GO:0004467: long-chain fatty acid-CoA ligase activity3.86E-03
81GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity3.86E-03
82GO:0004722: protein serine/threonine phosphatase activity4.07E-03
83GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.48E-03
84GO:0015288: porin activity4.48E-03
85GO:0016209: antioxidant activity4.48E-03
86GO:0008308: voltage-gated anion channel activity5.13E-03
87GO:0005507: copper ion binding5.70E-03
88GO:0008417: fucosyltransferase activity5.81E-03
89GO:0016207: 4-coumarate-CoA ligase activity5.81E-03
90GO:0008889: glycerophosphodiester phosphodiesterase activity5.81E-03
91GO:0000989: transcription factor activity, transcription factor binding5.81E-03
92GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.81E-03
93GO:0045309: protein phosphorylated amino acid binding6.52E-03
94GO:0016844: strictosidine synthase activity6.52E-03
95GO:0003993: acid phosphatase activity6.77E-03
96GO:0004568: chitinase activity7.26E-03
97GO:0051539: 4 iron, 4 sulfur cluster binding7.38E-03
98GO:0019904: protein domain specific binding8.04E-03
99GO:0004129: cytochrome-c oxidase activity8.04E-03
100GO:0008794: arsenate reductase (glutaredoxin) activity8.04E-03
101GO:0005524: ATP binding8.09E-03
102GO:0000287: magnesium ion binding9.19E-03
103GO:0004601: peroxidase activity9.41E-03
104GO:0008266: poly(U) RNA binding1.05E-02
105GO:0003712: transcription cofactor activity1.14E-02
106GO:0043130: ubiquitin binding1.32E-02
107GO:0051536: iron-sulfur cluster binding1.32E-02
108GO:0031418: L-ascorbic acid binding1.32E-02
109GO:0005385: zinc ion transmembrane transporter activity1.32E-02
110GO:0008324: cation transmembrane transporter activity1.42E-02
111GO:0004812: aminoacyl-tRNA ligase activity1.94E-02
112GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.07E-02
113GO:0001085: RNA polymerase II transcription factor binding2.16E-02
114GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.16E-02
115GO:0005199: structural constituent of cell wall2.16E-02
116GO:0005355: glucose transmembrane transporter activity2.27E-02
117GO:0010181: FMN binding2.27E-02
118GO:0005351: sugar:proton symporter activity2.72E-02
119GO:0003684: damaged DNA binding2.87E-02
120GO:0016597: amino acid binding3.13E-02
121GO:0015250: water channel activity3.26E-02
122GO:0030247: polysaccharide binding3.66E-02
123GO:0015238: drug transmembrane transporter activity4.08E-02
124GO:0008168: methyltransferase activity4.14E-02
125GO:0004222: metalloendopeptidase activity4.22E-02
126GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding4.36E-02
127GO:0050897: cobalt ion binding4.36E-02
128GO:0016788: hydrolase activity, acting on ester bonds4.38E-02
129GO:0003746: translation elongation factor activity4.66E-02
130GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.66E-02
131GO:0008422: beta-glucosidase activity4.95E-02
RankGO TermAdjusted P value
1GO:0000502: proteasome complex1.50E-12
2GO:0005839: proteasome core complex1.09E-09
3GO:0005774: vacuolar membrane8.55E-09
4GO:0005773: vacuole1.75E-07
5GO:0005783: endoplasmic reticulum2.07E-07
6GO:0005829: cytosol1.31E-05
7GO:0005776: autophagosome4.39E-05
8GO:0008250: oligosaccharyltransferase complex7.01E-05
9GO:0005794: Golgi apparatus8.26E-05
10GO:0005741: mitochondrial outer membrane1.02E-04
11GO:0009506: plasmodesma1.55E-04
12GO:0005789: endoplasmic reticulum membrane2.07E-04
13GO:0009510: plasmodesmatal desmotubule2.53E-04
14GO:0019773: proteasome core complex, alpha-subunit complex2.90E-04
15GO:0005886: plasma membrane5.48E-04
16GO:0000015: phosphopyruvate hydratase complex5.59E-04
17GO:0000325: plant-type vacuole7.70E-04
18GO:0005750: mitochondrial respiratory chain complex III8.19E-04
19GO:0046861: glyoxysomal membrane9.07E-04
20GO:0009530: primary cell wall9.07E-04
21GO:0005618: cell wall9.57E-04
22GO:0016020: membrane1.16E-03
23GO:0005775: vacuolar lumen1.29E-03
24GO:0009331: glycerol-3-phosphate dehydrogenase complex1.29E-03
25GO:0071782: endoplasmic reticulum tubular network1.29E-03
26GO:0031410: cytoplasmic vesicle1.48E-03
27GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)1.73E-03
28GO:0005746: mitochondrial respiratory chain2.21E-03
29GO:0030904: retromer complex2.72E-03
30GO:0005771: multivesicular body2.72E-03
31GO:0005788: endoplasmic reticulum lumen4.15E-03
32GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane4.48E-03
33GO:0000421: autophagosome membrane4.48E-03
34GO:0009514: glyoxysome5.13E-03
35GO:0046930: pore complex5.13E-03
36GO:0031090: organelle membrane5.81E-03
37GO:0016021: integral component of membrane6.71E-03
38GO:0005740: mitochondrial envelope7.26E-03
39GO:0017119: Golgi transport complex7.26E-03
40GO:0008541: proteasome regulatory particle, lid subcomplex8.04E-03
41GO:0090406: pollen tube8.35E-03
42GO:0030176: integral component of endoplasmic reticulum membrane1.14E-02
43GO:0005753: mitochondrial proton-transporting ATP synthase complex1.14E-02
44GO:0005758: mitochondrial intermembrane space1.32E-02
45GO:0009507: chloroplast1.36E-02
46GO:0070469: respiratory chain1.42E-02
47GO:0009570: chloroplast stroma2.21E-02
48GO:0009504: cell plate2.39E-02
49GO:0005759: mitochondrial matrix2.54E-02
50GO:0032580: Golgi cisterna membrane2.87E-02
51GO:0005667: transcription factor complex3.52E-02
52GO:0048046: apoplast3.77E-02
53GO:0022626: cytosolic ribosome3.92E-02
54GO:0009707: chloroplast outer membrane3.93E-02
55GO:0015934: large ribosomal subunit4.36E-02
56GO:0009536: plastid4.45E-02
57GO:0009505: plant-type cell wall4.59E-02
58GO:0005777: peroxisome4.89E-02
59GO:0005819: spindle4.95E-02
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Gene type



Gene DE type