Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G32080

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1905421: regulation of plant organ morphogenesis0.00E+00
2GO:0002184: cytoplasmic translational termination0.00E+00
3GO:0030155: regulation of cell adhesion0.00E+00
4GO:0019323: pentose catabolic process0.00E+00
5GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
6GO:0016553: base conversion or substitution editing0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
9GO:0090279: regulation of calcium ion import0.00E+00
10GO:0005996: monosaccharide metabolic process0.00E+00
11GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
12GO:0015717: triose phosphate transport0.00E+00
13GO:1905177: tracheary element differentiation0.00E+00
14GO:0071474: cellular hyperosmotic response0.00E+00
15GO:0015979: photosynthesis3.89E-21
16GO:0009735: response to cytokinin3.44E-14
17GO:0032544: plastid translation4.50E-14
18GO:0006412: translation1.63E-13
19GO:0042254: ribosome biogenesis1.14E-08
20GO:0009409: response to cold1.48E-08
21GO:0042742: defense response to bacterium1.57E-07
22GO:0019464: glycine decarboxylation via glycine cleavage system5.69E-07
23GO:0009773: photosynthetic electron transport in photosystem I1.05E-06
24GO:0030388: fructose 1,6-bisphosphate metabolic process5.06E-06
25GO:0010196: nonphotochemical quenching6.86E-06
26GO:0009768: photosynthesis, light harvesting in photosystem I6.97E-06
27GO:0005978: glycogen biosynthetic process1.04E-05
28GO:0006000: fructose metabolic process1.79E-05
29GO:0019252: starch biosynthetic process3.31E-05
30GO:0018119: peptidyl-cysteine S-nitrosylation4.56E-05
31GO:0045454: cell redox homeostasis6.66E-05
32GO:0006094: gluconeogenesis6.97E-05
33GO:0006109: regulation of carbohydrate metabolic process7.06E-05
34GO:0045727: positive regulation of translation7.06E-05
35GO:0010021: amylopectin biosynthetic process7.06E-05
36GO:0010027: thylakoid membrane organization7.77E-05
37GO:0015995: chlorophyll biosynthetic process1.05E-04
38GO:0018298: protein-chromophore linkage1.27E-04
39GO:0009658: chloroplast organization1.54E-04
40GO:0042549: photosystem II stabilization1.60E-04
41GO:0009645: response to low light intensity stimulus2.83E-04
42GO:0000023: maltose metabolic process3.34E-04
43GO:0000025: maltose catabolic process3.34E-04
44GO:0005980: glycogen catabolic process3.34E-04
45GO:0043489: RNA stabilization3.34E-04
46GO:0044262: cellular carbohydrate metabolic process3.34E-04
47GO:0080093: regulation of photorespiration3.34E-04
48GO:0031998: regulation of fatty acid beta-oxidation3.34E-04
49GO:0009704: de-etiolation3.55E-04
50GO:0006002: fructose 6-phosphate metabolic process4.36E-04
51GO:0010206: photosystem II repair5.24E-04
52GO:0010270: photosystem II oxygen evolving complex assembly7.29E-04
53GO:0051262: protein tetramerization7.29E-04
54GO:0035304: regulation of protein dephosphorylation7.29E-04
55GO:0019388: galactose catabolic process7.29E-04
56GO:0005976: polysaccharide metabolic process7.29E-04
57GO:0043085: positive regulation of catalytic activity8.32E-04
58GO:0005983: starch catabolic process9.49E-04
59GO:0009817: defense response to fungus, incompatible interaction1.06E-03
60GO:0009767: photosynthetic electron transport chain1.07E-03
61GO:0005986: sucrose biosynthetic process1.07E-03
62GO:0048281: inflorescence morphogenesis1.18E-03
63GO:0006518: peptide metabolic process1.18E-03
64GO:0010623: programmed cell death involved in cell development1.18E-03
65GO:0080055: low-affinity nitrate transport1.18E-03
66GO:0035436: triose phosphate transmembrane transport1.18E-03
67GO:0090153: regulation of sphingolipid biosynthetic process1.18E-03
68GO:0016050: vesicle organization1.18E-03
69GO:0010207: photosystem II assembly1.21E-03
70GO:0019253: reductive pentose-phosphate cycle1.21E-03
71GO:0034599: cellular response to oxidative stress1.51E-03
72GO:0006289: nucleotide-excision repair1.66E-03
73GO:0006241: CTP biosynthetic process1.70E-03
74GO:0009052: pentose-phosphate shunt, non-oxidative branch1.70E-03
75GO:0010731: protein glutathionylation1.70E-03
76GO:0006424: glutamyl-tRNA aminoacylation1.70E-03
77GO:0006165: nucleoside diphosphate phosphorylation1.70E-03
78GO:0009590: detection of gravity1.70E-03
79GO:0006228: UTP biosynthetic process1.70E-03
80GO:0010148: transpiration1.70E-03
81GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.70E-03
82GO:1902358: sulfate transmembrane transport1.70E-03
83GO:0061077: chaperone-mediated protein folding2.02E-03
84GO:0015976: carbon utilization2.28E-03
85GO:0051322: anaphase2.28E-03
86GO:0009765: photosynthesis, light harvesting2.28E-03
87GO:0006183: GTP biosynthetic process2.28E-03
88GO:2000122: negative regulation of stomatal complex development2.28E-03
89GO:0010600: regulation of auxin biosynthetic process2.28E-03
90GO:0006546: glycine catabolic process2.28E-03
91GO:0006552: leucine catabolic process2.28E-03
92GO:0010508: positive regulation of autophagy2.28E-03
93GO:0015713: phosphoglycerate transport2.28E-03
94GO:0010037: response to carbon dioxide2.28E-03
95GO:0006979: response to oxidative stress2.32E-03
96GO:0009585: red, far-red light phototransduction2.89E-03
97GO:0032543: mitochondrial translation2.91E-03
98GO:0006544: glycine metabolic process2.91E-03
99GO:0006097: glyoxylate cycle2.91E-03
100GO:0006461: protein complex assembly2.91E-03
101GO:0006662: glycerol ether metabolic process3.30E-03
102GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.60E-03
103GO:0000470: maturation of LSU-rRNA3.60E-03
104GO:0009913: epidermal cell differentiation3.60E-03
105GO:0010190: cytochrome b6f complex assembly3.60E-03
106GO:0006828: manganese ion transport3.60E-03
107GO:0009643: photosynthetic acclimation3.60E-03
108GO:0006563: L-serine metabolic process3.60E-03
109GO:0009955: adaxial/abaxial pattern specification4.33E-03
110GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.33E-03
111GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)4.33E-03
112GO:1901259: chloroplast rRNA processing4.33E-03
113GO:0010161: red light signaling pathway5.11E-03
114GO:0070370: cellular heat acclimation5.11E-03
115GO:0008272: sulfate transport5.11E-03
116GO:0022904: respiratory electron transport chain5.11E-03
117GO:0010103: stomatal complex morphogenesis5.11E-03
118GO:0010928: regulation of auxin mediated signaling pathway5.94E-03
119GO:0001558: regulation of cell growth6.81E-03
120GO:0009657: plastid organization6.81E-03
121GO:0017004: cytochrome complex assembly6.81E-03
122GO:0006783: heme biosynthetic process7.73E-03
123GO:0010218: response to far red light8.49E-03
124GO:0010205: photoinhibition8.68E-03
125GO:0035999: tetrahydrofolate interconversion8.68E-03
126GO:0042761: very long-chain fatty acid biosynthetic process8.68E-03
127GO:0005982: starch metabolic process8.68E-03
128GO:0007623: circadian rhythm9.10E-03
129GO:0031627: telomeric loop formation9.69E-03
130GO:0006782: protoporphyrinogen IX biosynthetic process9.69E-03
131GO:0055114: oxidation-reduction process9.72E-03
132GO:0009853: photorespiration9.77E-03
133GO:0009637: response to blue light9.77E-03
134GO:0008152: metabolic process1.05E-02
135GO:0010015: root morphogenesis1.07E-02
136GO:0006816: calcium ion transport1.07E-02
137GO:0019684: photosynthesis, light reaction1.07E-02
138GO:0000272: polysaccharide catabolic process1.07E-02
139GO:0006415: translational termination1.07E-02
140GO:0009750: response to fructose1.07E-02
141GO:0016485: protein processing1.07E-02
142GO:0045037: protein import into chloroplast stroma1.18E-02
143GO:0010114: response to red light1.26E-02
144GO:0010102: lateral root morphogenesis1.29E-02
145GO:0006108: malate metabolic process1.29E-02
146GO:0006006: glucose metabolic process1.29E-02
147GO:0009644: response to high light intensity1.37E-02
148GO:0009266: response to temperature stimulus1.41E-02
149GO:0010020: chloroplast fission1.41E-02
150GO:0006810: transport1.50E-02
151GO:0005985: sucrose metabolic process1.53E-02
152GO:0010025: wax biosynthetic process1.65E-02
153GO:0046686: response to cadmium ion1.68E-02
154GO:0006364: rRNA processing1.71E-02
155GO:0009944: polarity specification of adaxial/abaxial axis1.77E-02
156GO:0000027: ribosomal large subunit assembly1.77E-02
157GO:0051302: regulation of cell division1.90E-02
158GO:0006418: tRNA aminoacylation for protein translation1.90E-02
159GO:0007017: microtubule-based process1.90E-02
160GO:0006096: glycolytic process2.02E-02
161GO:0043086: negative regulation of catalytic activity2.02E-02
162GO:0016114: terpenoid biosynthetic process2.03E-02
163GO:0080167: response to karrikin2.08E-02
164GO:0009416: response to light stimulus2.16E-02
165GO:0010017: red or far-red light signaling pathway2.17E-02
166GO:0035428: hexose transmembrane transport2.17E-02
167GO:0009686: gibberellin biosynthetic process2.31E-02
168GO:0009411: response to UV2.31E-02
169GO:0001944: vasculature development2.31E-02
170GO:0010089: xylem development2.45E-02
171GO:0006284: base-excision repair2.45E-02
172GO:0042631: cellular response to water deprivation2.74E-02
173GO:0042335: cuticle development2.74E-02
174GO:0000413: protein peptidyl-prolyl isomerization2.74E-02
175GO:0048868: pollen tube development2.89E-02
176GO:0046323: glucose import2.89E-02
177GO:0009646: response to absence of light3.05E-02
178GO:0015986: ATP synthesis coupled proton transport3.05E-02
179GO:0048825: cotyledon development3.20E-02
180GO:0000302: response to reactive oxygen species3.36E-02
181GO:0009790: embryo development3.55E-02
182GO:0030163: protein catabolic process3.69E-02
183GO:0071281: cellular response to iron ion3.69E-02
184GO:0000910: cytokinesis4.19E-02
185GO:0005975: carbohydrate metabolic process4.27E-02
RankGO TermAdjusted P value
1GO:0051738: xanthophyll binding0.00E+00
2GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
3GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity0.00E+00
4GO:0004174: electron-transferring-flavoprotein dehydrogenase activity0.00E+00
5GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
6GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
7GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
8GO:0048039: ubiquinone binding0.00E+00
9GO:0004822: isoleucine-tRNA ligase activity0.00E+00
10GO:0009899: ent-kaurene synthase activity0.00E+00
11GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor0.00E+00
12GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
13GO:0019843: rRNA binding5.11E-21
14GO:0003735: structural constituent of ribosome4.07E-16
15GO:0008266: poly(U) RNA binding6.18E-10
16GO:0005528: FK506 binding2.03E-09
17GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.35E-07
18GO:0051920: peroxiredoxin activity4.29E-06
19GO:0031409: pigment binding4.41E-06
20GO:0016168: chlorophyll binding5.02E-06
21GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.06E-06
22GO:0010297: heteropolysaccharide binding5.06E-06
23GO:0016209: antioxidant activity1.04E-05
24GO:0004324: ferredoxin-NADP+ reductase activity1.79E-05
25GO:0004375: glycine dehydrogenase (decarboxylating) activity3.96E-05
26GO:0016851: magnesium chelatase activity3.96E-05
27GO:0003959: NADPH dehydrogenase activity1.11E-04
28GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.34E-04
29GO:0005227: calcium activated cation channel activity3.34E-04
30GO:0008184: glycogen phosphorylase activity3.34E-04
31GO:0004856: xylulokinase activity3.34E-04
32GO:0009496: plastoquinol--plastocyanin reductase activity3.34E-04
33GO:0004134: 4-alpha-glucanotransferase activity3.34E-04
34GO:0004645: phosphorylase activity3.34E-04
35GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.34E-04
36GO:0010242: oxygen evolving activity3.34E-04
37GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.34E-04
38GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.34E-04
39GO:0008158: hedgehog receptor activity3.34E-04
40GO:0004853: uroporphyrinogen decarboxylase activity3.34E-04
41GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.34E-04
42GO:0050662: coenzyme binding3.99E-04
43GO:0008047: enzyme activator activity7.22E-04
44GO:0033201: alpha-1,4-glucan synthase activity7.29E-04
45GO:0004750: ribulose-phosphate 3-epimerase activity7.29E-04
46GO:0018708: thiol S-methyltransferase activity7.29E-04
47GO:0003844: 1,4-alpha-glucan branching enzyme activity7.29E-04
48GO:0004614: phosphoglucomutase activity7.29E-04
49GO:0008967: phosphoglycolate phosphatase activity7.29E-04
50GO:0004618: phosphoglycerate kinase activity7.29E-04
51GO:0080054: low-affinity nitrate transmembrane transporter activity1.18E-03
52GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.18E-03
53GO:0043169: cation binding1.18E-03
54GO:0004373: glycogen (starch) synthase activity1.18E-03
55GO:0002161: aminoacyl-tRNA editing activity1.18E-03
56GO:0004148: dihydrolipoyl dehydrogenase activity1.18E-03
57GO:0045174: glutathione dehydrogenase (ascorbate) activity1.18E-03
58GO:0030267: glyoxylate reductase (NADP) activity1.18E-03
59GO:0071917: triose-phosphate transmembrane transporter activity1.18E-03
60GO:0004222: metalloendopeptidase activity1.20E-03
61GO:0016491: oxidoreductase activity1.37E-03
62GO:0004857: enzyme inhibitor activity1.66E-03
63GO:0016149: translation release factor activity, codon specific1.70E-03
64GO:0004550: nucleoside diphosphate kinase activity1.70E-03
65GO:0043023: ribosomal large subunit binding1.70E-03
66GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.28E-03
67GO:0019104: DNA N-glycosylase activity2.28E-03
68GO:0009011: starch synthase activity2.28E-03
69GO:0008878: glucose-1-phosphate adenylyltransferase activity2.28E-03
70GO:0019199: transmembrane receptor protein kinase activity2.28E-03
71GO:0042277: peptide binding2.28E-03
72GO:0015120: phosphoglycerate transmembrane transporter activity2.28E-03
73GO:0047134: protein-disulfide reductase activity2.84E-03
74GO:0004372: glycine hydroxymethyltransferase activity2.91E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor2.91E-03
76GO:0004040: amidase activity2.91E-03
77GO:0004791: thioredoxin-disulfide reductase activity3.55E-03
78GO:2001070: starch binding3.60E-03
79GO:0004332: fructose-bisphosphate aldolase activity3.60E-03
80GO:0004130: cytochrome-c peroxidase activity3.60E-03
81GO:0016615: malate dehydrogenase activity3.60E-03
82GO:0004601: peroxidase activity3.62E-03
83GO:0048038: quinone binding4.08E-03
84GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.33E-03
85GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.33E-03
86GO:0004602: glutathione peroxidase activity4.33E-03
87GO:0030060: L-malate dehydrogenase activity4.33E-03
88GO:0005261: cation channel activity4.33E-03
89GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.64E-03
90GO:0008271: secondary active sulfate transmembrane transporter activity6.81E-03
91GO:0015078: hydrogen ion transmembrane transporter activity6.81E-03
92GO:0004252: serine-type endopeptidase activity6.89E-03
93GO:0008236: serine-type peptidase activity7.32E-03
94GO:0003747: translation release factor activity7.73E-03
95GO:0005384: manganese ion transmembrane transporter activity8.68E-03
96GO:0003691: double-stranded telomeric DNA binding1.07E-02
97GO:0015386: potassium:proton antiporter activity1.07E-02
98GO:0015116: sulfate transmembrane transporter activity1.18E-02
99GO:0000049: tRNA binding1.18E-02
100GO:0005515: protein binding1.28E-02
101GO:0004022: alcohol dehydrogenase (NAD) activity1.29E-02
102GO:0004089: carbonate dehydratase activity1.29E-02
103GO:0015095: magnesium ion transmembrane transporter activity1.29E-02
104GO:0031072: heat shock protein binding1.29E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding1.37E-02
106GO:0005509: calcium ion binding1.86E-02
107GO:0015079: potassium ion transmembrane transporter activity1.90E-02
108GO:0022891: substrate-specific transmembrane transporter activity2.31E-02
109GO:0015035: protein disulfide oxidoreductase activity2.51E-02
110GO:0004812: aminoacyl-tRNA ligase activity2.60E-02
111GO:0001085: RNA polymerase II transcription factor binding2.89E-02
112GO:0016787: hydrolase activity3.05E-02
113GO:0005355: glucose transmembrane transporter activity3.05E-02
114GO:0030170: pyridoxal phosphate binding3.38E-02
115GO:0003684: damaged DNA binding3.85E-02
116GO:0005200: structural constituent of cytoskeleton4.02E-02
117GO:0008237: metallopeptidase activity4.02E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0017133: mitochondrial electron transfer flavoprotein complex0.00E+00
3GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
4GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex0.00E+00
5GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
6GO:0044391: ribosomal subunit0.00E+00
7GO:0009507: chloroplast2.93E-98
8GO:0009570: chloroplast stroma2.11E-77
9GO:0009941: chloroplast envelope1.82E-73
10GO:0009534: chloroplast thylakoid8.40E-63
11GO:0009579: thylakoid2.18E-59
12GO:0009535: chloroplast thylakoid membrane7.30E-53
13GO:0009543: chloroplast thylakoid lumen2.19E-24
14GO:0031977: thylakoid lumen3.78E-21
15GO:0010287: plastoglobule1.40E-19
16GO:0005840: ribosome8.25E-17
17GO:0010319: stromule1.98E-14
18GO:0048046: apoplast6.17E-09
19GO:0016020: membrane2.78E-08
20GO:0030095: chloroplast photosystem II4.68E-08
21GO:0009654: photosystem II oxygen evolving complex1.66E-07
22GO:0009523: photosystem II1.33E-06
23GO:0019898: extrinsic component of membrane1.33E-06
24GO:0030076: light-harvesting complex3.44E-06
25GO:0009533: chloroplast stromal thylakoid6.86E-06
26GO:0009538: photosystem I reaction center1.04E-05
27GO:0010007: magnesium chelatase complex1.79E-05
28GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.06E-05
29GO:0009522: photosystem I2.88E-05
30GO:0005960: glycine cleavage complex3.96E-05
31GO:0009295: nucleoid6.23E-05
32GO:0009508: plastid chromosome6.97E-05
33GO:0009536: plastid9.51E-05
34GO:0055035: plastid thylakoid membrane1.11E-04
35GO:0009706: chloroplast inner membrane1.23E-04
36GO:0031969: chloroplast membrane2.51E-04
37GO:0009782: photosystem I antenna complex3.34E-04
38GO:0009501: amyloplast3.55E-04
39GO:0000427: plastid-encoded plastid RNA polymerase complex7.29E-04
40GO:0030093: chloroplast photosystem I7.29E-04
41GO:0000311: plastid large ribosomal subunit9.49E-04
42GO:0015934: large ribosomal subunit1.28E-03
43GO:0042651: thylakoid membrane1.84E-03
44GO:0015935: small ribosomal subunit2.02E-03
45GO:0009517: PSII associated light-harvesting complex II2.28E-03
46GO:0009512: cytochrome b6f complex2.91E-03
47GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.60E-03
48GO:0009840: chloroplastic endopeptidase Clp complex4.33E-03
49GO:0022625: cytosolic large ribosomal subunit5.43E-03
50GO:0031305: integral component of mitochondrial inner membrane5.94E-03
51GO:0000783: nuclear telomere cap complex6.81E-03
52GO:0042644: chloroplast nucleoid7.73E-03
53GO:0045298: tubulin complex7.73E-03
54GO:0005763: mitochondrial small ribosomal subunit7.73E-03
55GO:0005740: mitochondrial envelope9.69E-03
56GO:0009574: preprophase band1.29E-02
57GO:0000312: plastid small ribosomal subunit1.41E-02
58GO:0009532: plastid stroma2.03E-02
59GO:0005623: cell3.13E-02
60GO:0005759: mitochondrial matrix3.82E-02
61GO:0030529: intracellular ribonucleoprotein complex4.37E-02
62GO:0005667: transcription factor complex4.72E-02
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Gene type



Gene DE type