co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G32070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
2	GO:0098586: cellular response to virus	0.00E+00
3	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
8	GO:0015882: L-ascorbic acid transport	0.00E+00
9	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
10	GO:0008298: intracellular mRNA localization	0.00E+00
11	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
12	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
13	GO:0070125: mitochondrial translational elongation	0.00E+00
14	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
15	GO:0015979: photosynthesis	2.12E-08
16	GO:0090391: granum assembly	2.80E-08
17	GO:0018298: protein-chromophore linkage	1.98E-07
18	GO:0042853: L-alanine catabolic process	3.89E-06
19	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.89E-06
20	GO:0080005: photosystem stoichiometry adjustment	3.89E-06
21	GO:0009642: response to light intensity	7.38E-06
22	GO:0009773: photosynthetic electron transport in photosystem I	3.32E-05
23	GO:0010027: thylakoid membrane organization	5.34E-05
24	GO:0009765: photosynthesis, light harvesting	5.61E-05
25	GO:0006021: inositol biosynthetic process	5.61E-05
26	GO:0009902: chloroplast relocation	5.61E-05
27	GO:0010207: photosystem II assembly	6.23E-05
28	GO:0009658: chloroplast organization	9.56E-05
29	GO:0046855: inositol phosphate dephosphorylation	1.29E-04
30	GO:0009643: photosynthetic acclimation	1.29E-04
31	GO:0010196: nonphotochemical quenching	2.30E-04
32	GO:0009644: response to high light intensity	2.41E-04
33	GO:0055114: oxidation-reduction process	2.43E-04
34	GO:0048564: photosystem I assembly	2.91E-04
35	GO:0010362: negative regulation of anion channel activity by blue light	2.92E-04
36	GO:0009443: pyridoxal 5'-phosphate salvage	2.92E-04
37	GO:0018002: N-terminal peptidyl-glutamic acid acetylation	2.92E-04
38	GO:0033388: putrescine biosynthetic process from arginine	2.92E-04
39	GO:0006475: internal protein amino acid acetylation	2.92E-04
40	GO:0071277: cellular response to calcium ion	2.92E-04
41	GO:0000481: maturation of 5S rRNA	2.92E-04
42	GO:0006474: N-terminal protein amino acid acetylation	2.92E-04
43	GO:0017198: N-terminal peptidyl-serine acetylation	2.92E-04
44	GO:0006436: tryptophanyl-tRNA aminoacylation	2.92E-04
45	GO:0010028: xanthophyll cycle	2.92E-04
46	GO:0034337: RNA folding	2.92E-04
47	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	2.92E-04
48	GO:0006419: alanyl-tRNA aminoacylation	2.92E-04
49	GO:0009657: plastid organization	3.57E-04
50	GO:0009793: embryo development ending in seed dormancy	3.79E-04
51	GO:0046741: transport of virus in host, tissue to tissue	6.40E-04
52	GO:0048314: embryo sac morphogenesis	6.40E-04
53	GO:0019752: carboxylic acid metabolic process	6.40E-04
54	GO:0042548: regulation of photosynthesis, light reaction	6.40E-04
55	GO:0006435: threonyl-tRNA aminoacylation	6.40E-04
56	GO:0000256: allantoin catabolic process	6.40E-04
57	GO:0009446: putrescine biosynthetic process	6.40E-04
58	GO:0006729: tetrahydrobiopterin biosynthetic process	6.40E-04
59	GO:0006568: tryptophan metabolic process	6.40E-04
60	GO:0043085: positive regulation of catalytic activity	6.86E-04
61	GO:0015995: chlorophyll biosynthetic process	7.31E-04
62	GO:0006790: sulfur compound metabolic process	7.84E-04
63	GO:0006006: glucose metabolic process	8.88E-04
64	GO:0009767: photosynthetic electron transport chain	8.88E-04
65	GO:0010020: chloroplast fission	9.97E-04
66	GO:0019253: reductive pentose-phosphate cycle	9.97E-04
67	GO:0010136: ureide catabolic process	1.04E-03
68	GO:0002230: positive regulation of defense response to virus by host	1.04E-03
69	GO:1901672: positive regulation of systemic acquired resistance	1.04E-03
70	GO:0071492: cellular response to UV-A	1.04E-03
71	GO:0005977: glycogen metabolic process	1.04E-03
72	GO:0046854: phosphatidylinositol phosphorylation	1.11E-03
73	GO:0009853: photorespiration	1.12E-03
74	GO:0034599: cellular response to oxidative stress	1.18E-03
75	GO:0007623: circadian rhythm	1.37E-03
76	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.48E-03
77	GO:0006145: purine nucleobase catabolic process	1.48E-03
78	GO:0051016: barbed-end actin filament capping	1.48E-03
79	GO:0043572: plastid fission	1.48E-03
80	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.48E-03
81	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.48E-03
82	GO:0006020: inositol metabolic process	1.48E-03
83	GO:0071484: cellular response to light intensity	1.48E-03
84	GO:0009768: photosynthesis, light harvesting in photosystem I	1.51E-03
85	GO:0055085: transmembrane transport	1.90E-03
86	GO:0006109: regulation of carbohydrate metabolic process	1.99E-03
87	GO:0015994: chlorophyll metabolic process	1.99E-03
88	GO:0010021: amylopectin biosynthetic process	1.99E-03
89	GO:0006545: glycine biosynthetic process	1.99E-03
90	GO:0071486: cellular response to high light intensity	1.99E-03
91	GO:0031935: regulation of chromatin silencing	1.99E-03
92	GO:0034052: positive regulation of plant-type hypersensitive response	2.54E-03
93	GO:0016558: protein import into peroxisome matrix	2.54E-03
94	GO:0016120: carotene biosynthetic process	2.54E-03
95	GO:0010117: photoprotection	2.54E-03
96	GO:0006656: phosphatidylcholine biosynthetic process	2.54E-03
97	GO:0006282: regulation of DNA repair	2.54E-03
98	GO:0016123: xanthophyll biosynthetic process	2.54E-03
99	GO:0006662: glycerol ether metabolic process	2.71E-03
100	GO:0042549: photosystem II stabilization	3.14E-03
101	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.14E-03
102	GO:0019761: glucosinolate biosynthetic process	3.57E-03
103	GO:0080167: response to karrikin	3.70E-03
104	GO:0010189: vitamin E biosynthetic process	3.77E-03
105	GO:0071470: cellular response to osmotic stress	3.77E-03
106	GO:0009645: response to low light intensity stimulus	4.45E-03
107	GO:0006400: tRNA modification	4.45E-03
108	GO:0048528: post-embryonic root development	4.45E-03
109	GO:0009704: de-etiolation	5.17E-03
110	GO:0032508: DNA duplex unwinding	5.17E-03
111	GO:0016559: peroxisome fission	5.17E-03
112	GO:0032544: plastid translation	5.92E-03
113	GO:0071482: cellular response to light stimulus	5.92E-03
114	GO:0016311: dephosphorylation	5.98E-03
115	GO:0006413: translational initiation	6.44E-03
116	GO:0009821: alkaloid biosynthetic process	6.71E-03
117	GO:0010206: photosystem II repair	6.71E-03
118	GO:0090333: regulation of stomatal closure	6.71E-03
119	GO:0000373: Group II intron splicing	6.71E-03
120	GO:0098656: anion transmembrane transport	6.71E-03
121	GO:0007568: aging	7.28E-03
122	GO:0009098: leucine biosynthetic process	7.54E-03
123	GO:1900426: positive regulation of defense response to bacterium	7.54E-03
124	GO:0009638: phototropism	7.54E-03
125	GO:0009637: response to blue light	7.98E-03
126	GO:0006949: syncytium formation	8.40E-03
127	GO:0006259: DNA metabolic process	8.40E-03
128	GO:0006265: DNA topological change	9.30E-03
129	GO:0009073: aromatic amino acid family biosynthetic process	9.30E-03
130	GO:0006415: translational termination	9.30E-03
131	GO:0018119: peptidyl-cysteine S-nitrosylation	9.30E-03
132	GO:0006810: transport	1.01E-02
133	GO:0010114: response to red light	1.03E-02
134	GO:0006807: nitrogen compound metabolic process	1.12E-02
135	GO:0019853: L-ascorbic acid biosynthetic process	1.32E-02
136	GO:0009735: response to cytokinin	1.39E-02
137	GO:0006863: purine nucleobase transport	1.43E-02
138	GO:0006833: water transport	1.43E-02
139	GO:0080147: root hair cell development	1.54E-02
140	GO:0009863: salicylic acid mediated signaling pathway	1.54E-02
141	GO:0009416: response to light stimulus	1.59E-02
142	GO:0008299: isoprenoid biosynthetic process	1.65E-02
143	GO:0006418: tRNA aminoacylation for protein translation	1.65E-02
144	GO:0007017: microtubule-based process	1.65E-02
145	GO:0051302: regulation of cell division	1.65E-02
146	GO:0006096: glycolytic process	1.65E-02
147	GO:0051321: meiotic cell cycle	1.76E-02
148	GO:0009553: embryo sac development	1.93E-02
149	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.00E-02
150	GO:0009625: response to insect	2.00E-02
151	GO:0006012: galactose metabolic process	2.00E-02
152	GO:0045454: cell redox homeostasis	2.03E-02
153	GO:0006396: RNA processing	2.05E-02
154	GO:0016117: carotenoid biosynthetic process	2.25E-02
155	GO:0034220: ion transmembrane transport	2.37E-02
156	GO:0010118: stomatal movement	2.37E-02
157	GO:0006606: protein import into nucleus	2.37E-02
158	GO:0032259: methylation	2.50E-02
159	GO:0048868: pollen tube development	2.50E-02
160	GO:0009409: response to cold	2.53E-02
161	GO:0009058: biosynthetic process	2.63E-02
162	GO:0007059: chromosome segregation	2.64E-02
163	GO:0009791: post-embryonic development	2.77E-02
164	GO:0019252: starch biosynthetic process	2.77E-02
165	GO:0008654: phospholipid biosynthetic process	2.77E-02
166	GO:0002229: defense response to oomycetes	2.91E-02
167	GO:0000302: response to reactive oxygen species	2.91E-02
168	GO:0010193: response to ozone	2.91E-02
169	GO:0006635: fatty acid beta-oxidation	2.91E-02
170	GO:0031047: gene silencing by RNA	3.05E-02
171	GO:0009828: plant-type cell wall loosening	3.34E-02
172	GO:0051607: defense response to virus	3.63E-02
173	GO:0001666: response to hypoxia	3.78E-02
174	GO:0009816: defense response to bacterium, incompatible interaction	3.93E-02
175	GO:0042128: nitrate assimilation	4.09E-02
176	GO:0048481: plant ovule development	4.57E-02
177	GO:0009817: defense response to fungus, incompatible interaction	4.57E-02
178	GO:0000160: phosphorelay signal transduction system	4.73E-02
179	GO:0006811: ion transport	4.89E-02
180	GO:0010218: response to far red light	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	0.00E+00
4	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
5	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
6	GO:0010276: phytol kinase activity	0.00E+00
7	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
8	GO:0042623: ATPase activity, coupled	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
11	GO:0003858: 3-hydroxybutyrate dehydrogenase activity	0.00E+00
12	GO:0050126: N-carbamoylputrescine amidase activity	0.00E+00
13	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
14	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
15	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
16	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
17	GO:0016168: chlorophyll binding	9.98E-08
18	GO:0008453: alanine-glyoxylate transaminase activity	3.96E-07
19	GO:0008934: inositol monophosphate 1-phosphatase activity	3.89E-06
20	GO:0052833: inositol monophosphate 4-phosphatase activity	3.89E-06
21	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	3.89E-06
22	GO:0052832: inositol monophosphate 3-phosphatase activity	3.89E-06
23	GO:0022891: substrate-specific transmembrane transporter activity	8.35E-06
24	GO:0070402: NADPH binding	1.39E-05
25	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	3.12E-05
26	GO:0043495: protein anchor	5.61E-05
27	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.76E-04
28	GO:0019899: enzyme binding	2.30E-04
29	GO:1990189: peptide-serine-N-acetyltransferase activity	2.92E-04
30	GO:0004813: alanine-tRNA ligase activity	2.92E-04
31	GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity	2.92E-04
32	GO:1990190: peptide-glutamate-N-acetyltransferase activity	2.92E-04
33	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.92E-04
34	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.92E-04
35	GO:0004830: tryptophan-tRNA ligase activity	2.92E-04
36	GO:0010347: L-galactose-1-phosphate phosphatase activity	2.92E-04
37	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	2.92E-04
38	GO:0035671: enone reductase activity	2.92E-04
39	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.92E-04
40	GO:0004451: isocitrate lyase activity	2.92E-04
41	GO:0016853: isomerase activity	3.07E-04
42	GO:0008047: enzyme activator activity	5.95E-04
43	GO:0004829: threonine-tRNA ligase activity	6.40E-04
44	GO:0019172: glyoxalase III activity	6.40E-04
45	GO:0019156: isoamylase activity	6.40E-04
46	GO:0019200: carbohydrate kinase activity	6.40E-04
47	GO:0000234: phosphoethanolamine N-methyltransferase activity	6.40E-04
48	GO:0003862: 3-isopropylmalate dehydrogenase activity	6.40E-04
49	GO:0047746: chlorophyllase activity	6.40E-04
50	GO:0004148: dihydrolipoyl dehydrogenase activity	1.04E-03
51	GO:0004751: ribose-5-phosphate isomerase activity	1.04E-03
52	GO:0030267: glyoxylate reductase (NADP) activity	1.04E-03
53	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.04E-03
54	GO:0031409: pigment binding	1.24E-03
55	GO:0005528: FK506 binding	1.37E-03
56	GO:0004792: thiosulfate sulfurtransferase activity	1.48E-03
57	GO:0016149: translation release factor activity, codon specific	1.48E-03
58	GO:0016851: magnesium chelatase activity	1.48E-03
59	GO:0009882: blue light photoreceptor activity	1.48E-03
60	GO:0051287: NAD binding	1.95E-03
61	GO:0042802: identical protein binding	1.97E-03
62	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.99E-03
63	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.99E-03
64	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.99E-03
65	GO:0047134: protein-disulfide reductase activity	2.32E-03
66	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	2.54E-03
67	GO:0016491: oxidoreductase activity	2.67E-03
68	GO:0008080: N-acetyltransferase activity	2.71E-03
69	GO:0004791: thioredoxin-disulfide reductase activity	2.91E-03
70	GO:0000293: ferric-chelate reductase activity	3.14E-03
71	GO:0004556: alpha-amylase activity	3.14E-03
72	GO:0004462: lactoylglutathione lyase activity	3.14E-03
73	GO:0004605: phosphatidate cytidylyltransferase activity	3.14E-03
74	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.77E-03
75	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.80E-03
76	GO:0004034: aldose 1-epimerase activity	5.17E-03
77	GO:0004033: aldo-keto reductase (NADP) activity	5.17E-03
78	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	5.92E-03
79	GO:0008135: translation factor activity, RNA binding	5.92E-03
80	GO:0003747: translation release factor activity	6.71E-03
81	GO:0009055: electron carrier activity	7.44E-03
82	GO:0045309: protein phosphorylated amino acid binding	7.54E-03
83	GO:0016844: strictosidine synthase activity	7.54E-03
84	GO:0003746: translation elongation factor activity	7.98E-03
85	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.30E-03
86	GO:0019904: protein domain specific binding	9.30E-03
87	GO:0000049: tRNA binding	1.02E-02
88	GO:0005315: inorganic phosphate transmembrane transporter activity	1.12E-02
89	GO:0031072: heat shock protein binding	1.12E-02
90	GO:0000155: phosphorelay sensor kinase activity	1.12E-02
91	GO:0051537: 2 iron, 2 sulfur cluster binding	1.12E-02
92	GO:0005198: structural molecule activity	1.16E-02
93	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.20E-02
94	GO:0031625: ubiquitin protein ligase binding	1.54E-02
95	GO:0004857: enzyme inhibitor activity	1.54E-02
96	GO:0005345: purine nucleobase transmembrane transporter activity	1.65E-02
97	GO:0004176: ATP-dependent peptidase activity	1.76E-02
98	GO:0015035: protein disulfide oxidoreductase activity	2.05E-02
99	GO:0003727: single-stranded RNA binding	2.12E-02
100	GO:0008514: organic anion transmembrane transporter activity	2.12E-02
101	GO:0004812: aminoacyl-tRNA ligase activity	2.25E-02
102	GO:0010181: FMN binding	2.64E-02
103	GO:0003924: GTPase activity	2.64E-02
104	GO:0030170: pyridoxal phosphate binding	2.76E-02
105	GO:0048038: quinone binding	2.91E-02
106	GO:0046872: metal ion binding	2.97E-02
107	GO:0016791: phosphatase activity	3.34E-02
108	GO:0016597: amino acid binding	3.63E-02
109	GO:0015250: water channel activity	3.78E-02
110	GO:0003743: translation initiation factor activity	4.01E-02
111	GO:0004721: phosphoprotein phosphatase activity	4.25E-02
112	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.41E-02
113	GO:0016887: ATPase activity	4.53E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009507: chloroplast	8.54E-72
4	GO:0009535: chloroplast thylakoid membrane	1.01E-37
5	GO:0009534: chloroplast thylakoid	2.19E-24
6	GO:0009570: chloroplast stroma	3.48E-20
7	GO:0009941: chloroplast envelope	5.06E-16
8	GO:0009579: thylakoid	9.02E-13
9	GO:0009543: chloroplast thylakoid lumen	8.65E-11
10	GO:0009523: photosystem II	1.93E-08
11	GO:0010287: plastoglobule	7.27E-07
12	GO:0031977: thylakoid lumen	7.33E-07
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.48E-05
14	GO:0042651: thylakoid membrane	1.20E-04
15	GO:0009538: photosystem I reaction center	2.91E-04
16	GO:0009782: photosystem I antenna complex	2.92E-04
17	GO:0031415: NatA complex	6.40E-04
18	GO:0008290: F-actin capping protein complex	6.40E-04
19	GO:0031969: chloroplast membrane	8.19E-04
20	GO:0009707: chloroplast outer membrane	8.32E-04
21	GO:0030095: chloroplast photosystem II	9.97E-04
22	GO:0010007: magnesium chelatase complex	1.04E-03
23	GO:0008287: protein serine/threonine phosphatase complex	1.04E-03
24	GO:0009654: photosystem II oxygen evolving complex	1.51E-03
25	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.99E-03
26	GO:0030286: dynein complex	1.99E-03
27	GO:0019898: extrinsic component of membrane	3.12E-03
28	GO:0009706: chloroplast inner membrane	3.51E-03
29	GO:0009295: nucleoid	4.30E-03
30	GO:0005778: peroxisomal membrane	4.30E-03
31	GO:0010319: stromule	4.30E-03
32	GO:0005623: cell	4.83E-03
33	GO:0032040: small-subunit processome	1.02E-02
34	GO:0009508: plastid chromosome	1.12E-02
35	GO:0030076: light-harvesting complex	1.32E-02
36	GO:0005777: peroxisome	1.96E-02
37	GO:0009536: plastid	2.14E-02
38	GO:0048046: apoplast	2.33E-02
39	GO:0009522: photosystem I	2.64E-02
40	GO:0005759: mitochondrial matrix	3.13E-02
41	GO:0016020: membrane	3.27E-02