Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G31970

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0044843: cell cycle G1/S phase transition0.00E+00
2GO:0071731: response to nitric oxide0.00E+00
3GO:1990481: mRNA pseudouridine synthesis0.00E+00
4GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)0.00E+00
5GO:0051050: positive regulation of transport0.00E+00
6GO:0000495: box H/ACA snoRNA 3'-end processing0.00E+00
7GO:0006364: rRNA processing1.48E-14
8GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2.81E-07
9GO:0009553: embryo sac development1.74E-05
10GO:0035266: meristem growth7.07E-05
11GO:0030490: maturation of SSU-rRNA7.07E-05
12GO:0000494: box C/D snoRNA 3'-end processing7.07E-05
13GO:0043985: histone H4-R3 methylation7.07E-05
14GO:1990258: histone glutamine methylation7.07E-05
15GO:0031120: snRNA pseudouridine synthesis7.07E-05
16GO:0000469: cleavage involved in rRNA processing7.07E-05
17GO:0031118: rRNA pseudouridine synthesis7.07E-05
18GO:0010162: seed dormancy process7.72E-05
19GO:0045041: protein import into mitochondrial intermembrane space1.70E-04
20GO:0048569: post-embryonic animal organ development1.70E-04
21GO:0009967: positive regulation of signal transduction1.70E-04
22GO:0080009: mRNA methylation1.70E-04
23GO:0009944: polarity specification of adaxial/abaxial axis2.00E-04
24GO:0051302: regulation of cell division2.22E-04
25GO:0007005: mitochondrion organization2.70E-04
26GO:0009294: DNA mediated transformation2.95E-04
27GO:0010501: RNA secondary structure unwinding3.77E-04
28GO:0007276: gamete generation4.15E-04
29GO:0051131: chaperone-mediated protein complex assembly4.15E-04
30GO:0046345: abscisic acid catabolic process5.53E-04
31GO:0042273: ribosomal large subunit biogenesis5.53E-04
32GO:0000460: maturation of 5.8S rRNA5.53E-04
33GO:0006412: translation6.72E-04
34GO:0031167: rRNA methylation7.00E-04
35GO:0000470: maturation of LSU-rRNA8.57E-04
36GO:0009920: cell plate formation involved in plant-type cell wall biogenesis8.57E-04
37GO:0000741: karyogamy8.57E-04
38GO:0042026: protein refolding1.02E-03
39GO:0006458: 'de novo' protein folding1.02E-03
40GO:0046686: response to cadmium ion1.02E-03
41GO:0042254: ribosome biogenesis1.04E-03
42GO:0006457: protein folding1.17E-03
43GO:0001510: RNA methylation1.56E-03
44GO:0001558: regulation of cell growth1.56E-03
45GO:0007338: single fertilization1.76E-03
46GO:0010449: root meristem growth1.97E-03
47GO:0006259: DNA metabolic process2.19E-03
48GO:0010582: floral meristem determinacy2.64E-03
49GO:0006396: RNA processing2.86E-03
50GO:2000012: regulation of auxin polar transport2.88E-03
51GO:0010030: positive regulation of seed germination3.37E-03
52GO:0010073: meristem maintenance4.17E-03
53GO:0061077: chaperone-mediated protein folding4.44E-03
54GO:0009555: pollen development4.46E-03
55GO:0009451: RNA modification4.87E-03
56GO:0071215: cellular response to abscisic acid stimulus5.02E-03
57GO:0009561: megagametogenesis5.32E-03
58GO:0008033: tRNA processing5.93E-03
59GO:0000413: protein peptidyl-prolyl isomerization5.93E-03
60GO:0010305: leaf vascular tissue pattern formation6.24E-03
61GO:0010197: polar nucleus fusion6.24E-03
62GO:0009567: double fertilization forming a zygote and endosperm8.25E-03
63GO:0016049: cell growth1.09E-02
64GO:0010311: lateral root formation1.17E-02
65GO:0048527: lateral root development1.25E-02
66GO:0000154: rRNA modification1.73E-02
67GO:0009735: response to cytokinin2.20E-02
68GO:0048367: shoot system development2.26E-02
69GO:0016569: covalent chromatin modification2.42E-02
70GO:0009058: biosynthetic process3.08E-02
71GO:0009845: seed germination3.14E-02
72GO:0009790: embryo development3.31E-02
73GO:0006414: translational elongation3.58E-02
74GO:0007166: cell surface receptor signaling pathway4.10E-02
75GO:0008380: RNA splicing4.23E-02
76GO:0009651: response to salt stress4.95E-02
RankGO TermAdjusted P value
1GO:0016018: cyclosporin A binding0.00E+00
2GO:0003723: RNA binding1.38E-14
3GO:0000166: nucleotide binding3.94E-08
4GO:0030515: snoRNA binding1.46E-07
5GO:0043021: ribonucleoprotein complex binding2.81E-07
6GO:0008026: ATP-dependent helicase activity7.39E-07
7GO:0004004: ATP-dependent RNA helicase activity4.86E-05
8GO:0003735: structural constituent of ribosome6.23E-05
9GO:0042134: rRNA primary transcript binding7.07E-05
10GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.07E-05
11GO:1990259: histone-glutamine methyltransferase activity7.07E-05
12GO:0044183: protein binding involved in protein folding9.12E-05
13GO:0005078: MAP-kinase scaffold activity1.70E-04
14GO:0004407: histone deacetylase activity2.00E-04
15GO:0008649: rRNA methyltransferase activity2.86E-04
16GO:0003746: translation elongation factor activity1.15E-03
17GO:0008235: metalloexopeptidase activity1.19E-03
18GO:0008173: RNA methyltransferase activity1.56E-03
19GO:0003678: DNA helicase activity1.76E-03
20GO:0003924: GTPase activity2.16E-03
21GO:0004521: endoribonuclease activity2.64E-03
22GO:0000049: tRNA binding2.64E-03
23GO:0051082: unfolded protein binding2.78E-03
24GO:0009982: pseudouridine synthase activity2.88E-03
25GO:0019843: rRNA binding3.46E-03
26GO:0008483: transaminase activity8.61E-03
27GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.09E-02
28GO:0005524: ATP binding1.18E-02
29GO:0050897: cobalt ion binding1.25E-02
30GO:0000987: core promoter proximal region sequence-specific DNA binding1.37E-02
31GO:0004519: endonuclease activity1.47E-02
32GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.77E-02
33GO:0030170: pyridoxal phosphate binding3.19E-02
34GO:0005525: GTP binding3.94E-02
35GO:0008168: methyltransferase activity4.95E-02
RankGO TermAdjusted P value
1GO:0034455: t-UTP complex0.00E+00
2GO:0036396: MIS complex0.00E+00
3GO:0034457: Mpp10 complex0.00E+00
4GO:0005730: nucleolus1.35E-23
5GO:0032040: small-subunit processome1.07E-08
6GO:0030687: preribosome, large subunit precursor1.46E-07
7GO:0070545: PeBoW complex2.81E-07
8GO:0005634: nucleus3.77E-07
9GO:0005840: ribosome9.20E-06
10GO:0031428: box C/D snoRNP complex1.28E-05
11GO:0015030: Cajal body6.42E-05
12GO:0030688: preribosome, small subunit precursor7.07E-05
13GO:0080008: Cul4-RING E3 ubiquitin ligase complex1.41E-04
14GO:0005834: heterotrimeric G-protein complex2.49E-04
15GO:0031429: box H/ACA snoRNP complex4.15E-04
16GO:0016363: nuclear matrix1.02E-03
17GO:0034399: nuclear periphery1.37E-03
18GO:0005747: mitochondrial respiratory chain complex I2.39E-03
19GO:0019013: viral nucleocapsid2.88E-03
20GO:0005774: vacuolar membrane4.11E-03
21GO:0022626: cytosolic ribosome4.21E-03
22GO:0005759: mitochondrial matrix4.34E-03
23GO:0005618: cell wall5.20E-03
24GO:0022627: cytosolic small ribosomal subunit6.30E-03
25GO:0019898: extrinsic component of membrane6.89E-03
26GO:0016592: mediator complex7.56E-03
27GO:0030529: intracellular ribonucleoprotein complex9.34E-03
28GO:0022625: cytosolic large ribosomal subunit9.60E-03
29GO:0009506: plasmodesma1.49E-02
30GO:0016607: nuclear speck2.26E-02
31GO:0005739: mitochondrion2.56E-02
32GO:0005732: small nucleolar ribonucleoprotein complex2.69E-02
33GO:0005654: nucleoplasm2.91E-02
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Gene type



Gene DE type