GO Enrichment Analysis of Co-expressed Genes with
AT1G31940
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0032211: negative regulation of telomere maintenance via telomerase | 0.00E+00 |
| 2 | GO:0007530: sex determination | 0.00E+00 |
| 3 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 4 | GO:0006412: translation | 2.88E-43 |
| 5 | GO:0042254: ribosome biogenesis | 6.98E-16 |
| 6 | GO:0000027: ribosomal large subunit assembly | 3.90E-07 |
| 7 | GO:0000494: box C/D snoRNA 3'-end processing | 1.44E-04 |
| 8 | GO:1990258: histone glutamine methylation | 1.44E-04 |
| 9 | GO:0015801: aromatic amino acid transport | 1.44E-04 |
| 10 | GO:0000398: mRNA splicing, via spliceosome | 1.47E-04 |
| 11 | GO:0000387: spliceosomal snRNP assembly | 1.84E-04 |
| 12 | GO:0043981: histone H4-K5 acetylation | 3.29E-04 |
| 13 | GO:0045793: positive regulation of cell size | 5.40E-04 |
| 14 | GO:0010452: histone H3-K36 methylation | 5.40E-04 |
| 15 | GO:1904278: positive regulation of wax biosynthetic process | 5.40E-04 |
| 16 | GO:0009150: purine ribonucleotide metabolic process | 5.40E-04 |
| 17 | GO:0002181: cytoplasmic translation | 5.40E-04 |
| 18 | GO:0032877: positive regulation of DNA endoreduplication | 7.73E-04 |
| 19 | GO:0006166: purine ribonucleoside salvage | 7.73E-04 |
| 20 | GO:0070301: cellular response to hydrogen peroxide | 7.73E-04 |
| 21 | GO:0006241: CTP biosynthetic process | 7.73E-04 |
| 22 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 7.73E-04 |
| 23 | GO:0006165: nucleoside diphosphate phosphorylation | 7.73E-04 |
| 24 | GO:0006228: UTP biosynthetic process | 7.73E-04 |
| 25 | GO:0006164: purine nucleotide biosynthetic process | 7.73E-04 |
| 26 | GO:0006168: adenine salvage | 7.73E-04 |
| 27 | GO:0000413: protein peptidyl-prolyl isomerization | 9.45E-04 |
| 28 | GO:0051781: positive regulation of cell division | 1.02E-03 |
| 29 | GO:0006183: GTP biosynthetic process | 1.02E-03 |
| 30 | GO:0006621: protein retention in ER lumen | 1.02E-03 |
| 31 | GO:0010183: pollen tube guidance | 1.16E-03 |
| 32 | GO:0044209: AMP salvage | 1.29E-03 |
| 33 | GO:0031167: rRNA methylation | 1.29E-03 |
| 34 | GO:0051568: histone H3-K4 methylation | 1.59E-03 |
| 35 | GO:0009554: megasporogenesis | 1.91E-03 |
| 36 | GO:0009955: adaxial/abaxial pattern specification | 1.91E-03 |
| 37 | GO:0009612: response to mechanical stimulus | 1.91E-03 |
| 38 | GO:0009690: cytokinin metabolic process | 2.60E-03 |
| 39 | GO:0000028: ribosomal small subunit assembly | 2.60E-03 |
| 40 | GO:0001510: RNA methylation | 2.96E-03 |
| 41 | GO:0010204: defense response signaling pathway, resistance gene-independent | 2.96E-03 |
| 42 | GO:0009735: response to cytokinin | 2.98E-03 |
| 43 | GO:0009793: embryo development ending in seed dormancy | 3.34E-03 |
| 44 | GO:0006189: 'de novo' IMP biosynthetic process | 3.35E-03 |
| 45 | GO:0048589: developmental growth | 3.35E-03 |
| 46 | GO:0009926: auxin polar transport | 3.75E-03 |
| 47 | GO:0008283: cell proliferation | 3.75E-03 |
| 48 | GO:0010449: root meristem growth | 3.76E-03 |
| 49 | GO:0009644: response to high light intensity | 4.06E-03 |
| 50 | GO:0016441: posttranscriptional gene silencing | 4.18E-03 |
| 51 | GO:0048229: gametophyte development | 4.61E-03 |
| 52 | GO:0006790: sulfur compound metabolic process | 5.06E-03 |
| 53 | GO:0016925: protein sumoylation | 5.06E-03 |
| 54 | GO:2000028: regulation of photoperiodism, flowering | 5.52E-03 |
| 55 | GO:0010102: lateral root morphogenesis | 5.52E-03 |
| 56 | GO:0010628: positive regulation of gene expression | 5.52E-03 |
| 57 | GO:0006626: protein targeting to mitochondrion | 5.52E-03 |
| 58 | GO:0010020: chloroplast fission | 6.00E-03 |
| 59 | GO:0006446: regulation of translational initiation | 6.00E-03 |
| 60 | GO:0009116: nucleoside metabolic process | 7.52E-03 |
| 61 | GO:0006289: nucleotide-excision repair | 7.52E-03 |
| 62 | GO:0003333: amino acid transmembrane transport | 8.61E-03 |
| 63 | GO:0007005: mitochondrion organization | 9.17E-03 |
| 64 | GO:0019722: calcium-mediated signaling | 1.03E-02 |
| 65 | GO:0006413: translational initiation | 1.16E-02 |
| 66 | GO:0008033: tRNA processing | 1.16E-02 |
| 67 | GO:0009908: flower development | 1.33E-02 |
| 68 | GO:0009556: microsporogenesis | 1.35E-02 |
| 69 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.41E-02 |
| 70 | GO:0015031: protein transport | 1.43E-02 |
| 71 | GO:0008380: RNA splicing | 1.49E-02 |
| 72 | GO:0009409: response to cold | 1.57E-02 |
| 73 | GO:0010286: heat acclimation | 1.69E-02 |
| 74 | GO:0000910: cytokinesis | 1.76E-02 |
| 75 | GO:0009860: pollen tube growth | 2.08E-02 |
| 76 | GO:0016049: cell growth | 2.14E-02 |
| 77 | GO:0009910: negative regulation of flower development | 2.46E-02 |
| 78 | GO:0006865: amino acid transport | 2.54E-02 |
| 79 | GO:0009965: leaf morphogenesis | 3.42E-02 |
| 80 | GO:0006281: DNA repair | 3.53E-02 |
| 81 | GO:0009846: pollen germination | 3.70E-02 |
| 82 | GO:0006364: rRNA processing | 3.89E-02 |
| 83 | GO:0009553: embryo sac development | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 3.64E-50 |
| 3 | GO:0003729: mRNA binding | 1.49E-07 |
| 4 | GO:0019843: rRNA binding | 1.33E-05 |
| 5 | GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity | 1.44E-04 |
| 6 | GO:1990259: histone-glutamine methyltransferase activity | 1.44E-04 |
| 7 | GO:0035614: snRNA stem-loop binding | 1.44E-04 |
| 8 | GO:0000824: inositol tetrakisphosphate 3-kinase activity | 1.44E-04 |
| 9 | GO:0047326: inositol tetrakisphosphate 5-kinase activity | 1.44E-04 |
| 10 | GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity | 1.44E-04 |
| 11 | GO:0005080: protein kinase C binding | 1.44E-04 |
| 12 | GO:0003723: RNA binding | 2.04E-04 |
| 13 | GO:0015173: aromatic amino acid transmembrane transporter activity | 3.29E-04 |
| 14 | GO:0030619: U1 snRNA binding | 3.29E-04 |
| 15 | GO:0008430: selenium binding | 5.40E-04 |
| 16 | GO:0008649: rRNA methyltransferase activity | 5.40E-04 |
| 17 | GO:0047627: adenylylsulfatase activity | 7.73E-04 |
| 18 | GO:0008097: 5S rRNA binding | 7.73E-04 |
| 19 | GO:0003999: adenine phosphoribosyltransferase activity | 7.73E-04 |
| 20 | GO:0004550: nucleoside diphosphate kinase activity | 7.73E-04 |
| 21 | GO:0010011: auxin binding | 1.02E-03 |
| 22 | GO:0046923: ER retention sequence binding | 1.02E-03 |
| 23 | GO:0070628: proteasome binding | 1.02E-03 |
| 24 | GO:0004872: receptor activity | 1.16E-03 |
| 25 | GO:0005275: amine transmembrane transporter activity | 1.29E-03 |
| 26 | GO:0031386: protein tag | 1.29E-03 |
| 27 | GO:0031593: polyubiquitin binding | 1.59E-03 |
| 28 | GO:0051920: peroxiredoxin activity | 1.91E-03 |
| 29 | GO:0042162: telomeric DNA binding | 2.24E-03 |
| 30 | GO:0030515: snoRNA binding | 2.24E-03 |
| 31 | GO:0016209: antioxidant activity | 2.60E-03 |
| 32 | GO:0043022: ribosome binding | 2.60E-03 |
| 33 | GO:0003746: translation elongation factor activity | 2.92E-03 |
| 34 | GO:0001055: RNA polymerase II activity | 3.76E-03 |
| 35 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 4.37E-03 |
| 36 | GO:0001054: RNA polymerase I activity | 4.61E-03 |
| 37 | GO:0008327: methyl-CpG binding | 4.61E-03 |
| 38 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.05E-03 |
| 39 | GO:0001056: RNA polymerase III activity | 5.06E-03 |
| 40 | GO:0003712: transcription cofactor activity | 6.50E-03 |
| 41 | GO:0043130: ubiquitin binding | 7.52E-03 |
| 42 | GO:0003743: translation initiation factor activity | 1.45E-02 |
| 43 | GO:0000166: nucleotide binding | 1.51E-02 |
| 44 | GO:0003684: damaged DNA binding | 1.62E-02 |
| 45 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.22E-02 |
| 46 | GO:0003697: single-stranded DNA binding | 2.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0005840: ribosome | 1.54E-36 |
| 2 | GO:0022625: cytosolic large ribosomal subunit | 4.79E-36 |
| 3 | GO:0022626: cytosolic ribosome | 3.06E-26 |
| 4 | GO:0022627: cytosolic small ribosomal subunit | 9.07E-15 |
| 5 | GO:0005829: cytosol | 8.51E-14 |
| 6 | GO:0005730: nucleolus | 9.74E-13 |
| 7 | GO:0015934: large ribosomal subunit | 4.19E-12 |
| 8 | GO:0005737: cytoplasm | 7.72E-10 |
| 9 | GO:0005732: small nucleolar ribonucleoprotein complex | 4.27E-07 |
| 10 | GO:0009506: plasmodesma | 1.57E-06 |
| 11 | GO:0005774: vacuolar membrane | 4.66E-05 |
| 12 | GO:0015030: Cajal body | 1.84E-04 |
| 13 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.93E-04 |
| 14 | GO:0035145: exon-exon junction complex | 3.29E-04 |
| 15 | GO:0005697: telomerase holoenzyme complex | 3.29E-04 |
| 16 | GO:0019013: viral nucleocapsid | 3.34E-04 |
| 17 | GO:0000419: DNA-directed RNA polymerase V complex | 4.72E-04 |
| 18 | GO:0015935: small ribosomal subunit | 6.31E-04 |
| 19 | GO:1990726: Lsm1-7-Pat1 complex | 7.73E-04 |
| 20 | GO:0005681: spliceosomal complex | 7.84E-04 |
| 21 | GO:0016593: Cdc73/Paf1 complex | 1.02E-03 |
| 22 | GO:0016020: membrane | 1.40E-03 |
| 23 | GO:0031428: box C/D snoRNP complex | 1.59E-03 |
| 24 | GO:0009507: chloroplast | 1.67E-03 |
| 25 | GO:0005773: vacuole | 2.02E-03 |
| 26 | GO:0005622: intracellular | 2.03E-03 |
| 27 | GO:0005688: U6 snRNP | 2.60E-03 |
| 28 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 2.96E-03 |
| 29 | GO:0005736: DNA-directed RNA polymerase I complex | 3.35E-03 |
| 30 | GO:0005685: U1 snRNP | 3.35E-03 |
| 31 | GO:0005666: DNA-directed RNA polymerase III complex | 3.76E-03 |
| 32 | GO:0071011: precatalytic spliceosome | 3.76E-03 |
| 33 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.18E-03 |
| 34 | GO:0005852: eukaryotic translation initiation factor 3 complex | 4.61E-03 |
| 35 | GO:0071013: catalytic step 2 spliceosome | 4.61E-03 |
| 36 | GO:0032040: small-subunit processome | 5.06E-03 |
| 37 | GO:0009508: plastid chromosome | 5.52E-03 |
| 38 | GO:0005769: early endosome | 7.00E-03 |
| 39 | GO:0009706: chloroplast inner membrane | 7.18E-03 |
| 40 | GO:0005758: mitochondrial intermembrane space | 7.52E-03 |
| 41 | GO:0005654: nucleoplasm | 8.75E-03 |
| 42 | GO:0005618: cell wall | 9.56E-03 |
| 43 | GO:0005886: plasma membrane | 1.17E-02 |
| 44 | GO:0009295: nucleoid | 1.69E-02 |
| 45 | GO:0000932: P-body | 1.84E-02 |
| 46 | GO:0030529: intracellular ribonucleoprotein complex | 1.84E-02 |
| 47 | GO:0005788: endoplasmic reticulum lumen | 1.91E-02 |
| 48 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.12E-02 |
| 49 | GO:0090406: pollen tube | 3.15E-02 |
| 50 | GO:0000502: proteasome complex | 3.89E-02 |
| 51 | GO:0016607: nuclear speck | 4.48E-02 |
| 52 | GO:0005834: heterotrimeric G-protein complex | 4.58E-02 |