co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31817

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0071433: cell wall repair	0.00E+00
2	GO:0070476: rRNA (guanine-N7)-methylation	0.00E+00
3	GO:0006364: rRNA processing	2.57E-08
4	GO:0043985: histone H4-R3 methylation	3.77E-05
5	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	9.40E-05
6	GO:0006421: asparaginyl-tRNA aminoacylation	1.63E-04
7	GO:0045604: regulation of epidermal cell differentiation	1.63E-04
8	GO:0009451: RNA modification	2.10E-04
9	GO:0007276: gamete generation	2.40E-04
10	GO:0006479: protein methylation	3.24E-04
11	GO:1900864: mitochondrial RNA modification	3.24E-04
12	GO:0042273: ribosomal large subunit biogenesis	3.24E-04
13	GO:0000380: alternative mRNA splicing, via spliceosome	4.13E-04
14	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	6.05E-04
15	GO:0030488: tRNA methylation	6.05E-04
16	GO:0048444: floral organ morphogenesis	6.05E-04
17	GO:0016444: somatic cell DNA recombination	6.05E-04
18	GO:0010077: maintenance of inflorescence meristem identity	6.05E-04
19	GO:0045995: regulation of embryonic development	7.07E-04
20	GO:0000028: ribosomal small subunit assembly	8.13E-04
21	GO:0042255: ribosome assembly	8.13E-04
22	GO:0006261: DNA-dependent DNA replication	9.23E-04
23	GO:2000024: regulation of leaf development	1.04E-03
24	GO:0006349: regulation of gene expression by genetic imprinting	1.15E-03
25	GO:0000387: spliceosomal snRNP assembly	1.15E-03
26	GO:1900865: chloroplast RNA modification	1.15E-03
27	GO:0016569: covalent chromatin modification	1.18E-03
28	GO:0009553: embryo sac development	1.22E-03
29	GO:0010030: positive regulation of seed germination	1.95E-03
30	GO:0000027: ribosomal large subunit assembly	2.25E-03
31	GO:0051302: regulation of cell division	2.40E-03
32	GO:0006334: nucleosome assembly	2.56E-03
33	GO:0009294: DNA mediated transformation	2.89E-03
34	GO:0009561: megagametogenesis	3.05E-03
35	GO:0070417: cellular response to cold	3.22E-03
36	GO:0042254: ribosome biogenesis	3.33E-03
37	GO:0010501: RNA secondary structure unwinding	3.40E-03
38	GO:0009960: endosperm development	3.58E-03
39	GO:0048825: cotyledon development	3.94E-03
40	GO:0045892: negative regulation of transcription, DNA-templated	4.91E-03
41	GO:0000724: double-strand break repair via homologous recombination	7.28E-03
42	GO:0006417: regulation of translation	1.19E-02
43	GO:0007166: cell surface receptor signaling pathway	2.30E-02
44	GO:0007049: cell cycle	3.08E-02
45	GO:0046686: response to cadmium ion	3.35E-02
46	GO:0032259: methylation	4.25E-02
47	GO:0006281: DNA repair	4.39E-02
48	GO:0048364: root development	4.52E-02
49	GO:0009793: embryo development ending in seed dormancy	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0016435: rRNA (guanine) methyltransferase activity	0.00E+00
2	GO:0000166: nucleotide binding	1.30E-09
3	GO:0003723: RNA binding	5.56E-06
4	GO:0001054: RNA polymerase I activity	3.56E-05
5	GO:0016274: protein-arginine N-methyltransferase activity	3.77E-05
6	GO:0004519: endonuclease activity	9.37E-05
7	GO:0043021: ribonucleoprotein complex binding	9.40E-05
8	GO:0004816: asparagine-tRNA ligase activity	1.63E-04
9	GO:0003689: DNA clamp loader activity	4.13E-04
10	GO:0030515: snoRNA binding	7.07E-04
11	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	8.97E-04
12	GO:0001056: RNA polymerase III activity	1.53E-03
13	GO:0004407: histone deacetylase activity	2.25E-03
14	GO:0008168: methyltransferase activity	3.15E-03
15	GO:0003676: nucleic acid binding	5.59E-03
16	GO:0004004: ATP-dependent RNA helicase activity	5.94E-03
17	GO:0000987: core promoter proximal region sequence-specific DNA binding	7.75E-03
18	GO:0042393: histone binding	8.23E-03
19	GO:0016887: ATPase activity	9.22E-03
20	GO:0016787: hydrolase activity	1.01E-02
21	GO:0051082: unfolded protein binding	1.42E-02
22	GO:0008026: ATP-dependent helicase activity	1.48E-02
23	GO:0019843: rRNA binding	1.66E-02
24	GO:0042802: identical protein binding	2.48E-02
25	GO:0003682: chromatin binding	2.97E-02
26	GO:0008270: zinc ion binding	2.99E-02
27	GO:0003729: mRNA binding	3.20E-02
28	GO:0003924: GTPase activity	4.39E-02

Rank	GO Term	Adjusted P value
1	GO:0005730: nucleolus	1.89E-14
2	GO:0030687: preribosome, large subunit precursor	3.27E-08
3	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.23E-06
4	GO:0005736: DNA-directed RNA polymerase I complex	1.99E-05
5	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	3.77E-05
6	GO:0070545: PeBoW complex	9.40E-05
7	GO:0005663: DNA replication factor C complex	3.24E-04
8	GO:0005634: nucleus	3.48E-04
9	GO:0034399: nuclear periphery	8.13E-04
10	GO:0005666: DNA-directed RNA polymerase III complex	1.15E-03
11	GO:0032040: small-subunit processome	1.53E-03
12	GO:0005834: heterotrimeric G-protein complex	1.30E-02
13	GO:0005759: mitochondrial matrix	1.95E-02
14	GO:0005743: mitochondrial inner membrane	4.17E-02
15	GO:0005829: cytosol	4.97E-02