co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017012: protein-phytochromobilin linkage	0.00E+00
2	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
3	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
4	GO:0010202: response to low fluence red light stimulus	0.00E+00
5	GO:0010265: SCF complex assembly	1.06E-04
6	GO:0006006: glucose metabolic process	2.19E-04
7	GO:0016560: protein import into peroxisome matrix, docking	2.48E-04
8	GO:0010617: circadian regulation of calcium ion oscillation	2.48E-04
9	GO:0006432: phenylalanyl-tRNA aminoacylation	2.48E-04
10	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	2.48E-04
11	GO:0019441: tryptophan catabolic process to kynurenine	2.48E-04
12	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	4.12E-04
13	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	4.12E-04
14	GO:0045793: positive regulation of cell size	4.12E-04
15	GO:0006165: nucleoside diphosphate phosphorylation	5.92E-04
16	GO:0006228: UTP biosynthetic process	5.92E-04
17	GO:0010148: transpiration	5.92E-04
18	GO:0010587: miRNA catabolic process	5.92E-04
19	GO:0032877: positive regulation of DNA endoreduplication	5.92E-04
20	GO:0006107: oxaloacetate metabolic process	5.92E-04
21	GO:0009584: detection of visible light	5.92E-04
22	GO:0006241: CTP biosynthetic process	5.92E-04
23	GO:0006625: protein targeting to peroxisome	7.86E-04
24	GO:0009649: entrainment of circadian clock	7.86E-04
25	GO:0006749: glutathione metabolic process	7.86E-04
26	GO:0032366: intracellular sterol transport	7.86E-04
27	GO:0044205: 'de novo' UMP biosynthetic process	7.86E-04
28	GO:0009687: abscisic acid metabolic process	7.86E-04
29	GO:0051781: positive regulation of cell division	7.86E-04
30	GO:0006183: GTP biosynthetic process	7.86E-04
31	GO:0006221: pyrimidine nucleotide biosynthetic process	7.86E-04
32	GO:0016126: sterol biosynthetic process	1.19E-03
33	GO:0009117: nucleotide metabolic process	1.21E-03
34	GO:0006751: glutathione catabolic process	1.21E-03
35	GO:0010029: regulation of seed germination	1.26E-03
36	GO:0010555: response to mannitol	1.45E-03
37	GO:2000067: regulation of root morphogenesis	1.45E-03
38	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	1.45E-03
39	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	1.70E-03
40	GO:0010374: stomatal complex development	1.70E-03
41	GO:0010161: red light signaling pathway	1.70E-03
42	GO:0048658: anther wall tapetum development	1.97E-03
43	GO:0009231: riboflavin biosynthetic process	1.97E-03
44	GO:0007186: G-protein coupled receptor signaling pathway	2.24E-03
45	GO:0080144: amino acid homeostasis	2.53E-03
46	GO:0009060: aerobic respiration	2.53E-03
47	GO:0098656: anion transmembrane transport	2.53E-03
48	GO:0009245: lipid A biosynthetic process	2.53E-03
49	GO:0006349: regulation of gene expression by genetic imprinting	2.84E-03
50	GO:0009638: phototropism	2.84E-03
51	GO:0006325: chromatin organization	3.15E-03
52	GO:0010048: vernalization response	3.15E-03
53	GO:0045454: cell redox homeostasis	3.30E-03
54	GO:0052544: defense response by callose deposition in cell wall	3.47E-03
55	GO:0072593: reactive oxygen species metabolic process	3.47E-03
56	GO:0009750: response to fructose	3.47E-03
57	GO:0006378: mRNA polyadenylation	3.47E-03
58	GO:0006820: anion transport	3.81E-03
59	GO:0016042: lipid catabolic process	4.15E-03
60	GO:0006807: nitrogen compound metabolic process	4.16E-03
61	GO:0006108: malate metabolic process	4.16E-03
62	GO:2000028: regulation of photoperiodism, flowering	4.16E-03
63	GO:0050826: response to freezing	4.16E-03
64	GO:0010020: chloroplast fission	4.52E-03
65	GO:0009266: response to temperature stimulus	4.52E-03
66	GO:0019853: L-ascorbic acid biosynthetic process	4.88E-03
67	GO:0007031: peroxisome organization	4.88E-03
68	GO:0034976: response to endoplasmic reticulum stress	5.26E-03
69	GO:0006071: glycerol metabolic process	5.26E-03
70	GO:0006874: cellular calcium ion homeostasis	6.05E-03
71	GO:0016226: iron-sulfur cluster assembly	6.87E-03
72	GO:0006012: galactose metabolic process	7.30E-03
73	GO:0080022: primary root development	8.64E-03
74	GO:0010051: xylem and phloem pattern formation	8.64E-03
75	GO:0042631: cellular response to water deprivation	8.64E-03
76	GO:0009960: endosperm development	9.10E-03
77	GO:0015986: ATP synthesis coupled proton transport	9.58E-03
78	GO:0009749: response to glucose	1.01E-02
79	GO:0016132: brassinosteroid biosynthetic process	1.06E-02
80	GO:0009630: gravitropism	1.11E-02
81	GO:1901657: glycosyl compound metabolic process	1.16E-02
82	GO:0009826: unidimensional cell growth	1.22E-02
83	GO:0010286: heat acclimation	1.26E-02
84	GO:0042254: ribosome biogenesis	1.30E-02
85	GO:0000910: cytokinesis	1.31E-02
86	GO:0006974: cellular response to DNA damage stimulus	1.48E-02
87	GO:0018298: protein-chromophore linkage	1.65E-02
88	GO:0006499: N-terminal protein myristoylation	1.77E-02
89	GO:0009407: toxin catabolic process	1.77E-02
90	GO:0010218: response to far red light	1.77E-02
91	GO:0009867: jasmonic acid mediated signaling pathway	1.95E-02
92	GO:0045087: innate immune response	1.95E-02
93	GO:0032259: methylation	2.23E-02
94	GO:0042542: response to hydrogen peroxide	2.27E-02
95	GO:0009408: response to heat	2.33E-02
96	GO:0009640: photomorphogenesis	2.34E-02
97	GO:0009926: auxin polar transport	2.34E-02
98	GO:0009744: response to sucrose	2.34E-02
99	GO:0009636: response to toxic substance	2.54E-02
100	GO:0008152: metabolic process	2.57E-02
101	GO:0031347: regulation of defense response	2.68E-02
102	GO:0006364: rRNA processing	2.89E-02
103	GO:0009585: red, far-red light phototransduction	2.89E-02
104	GO:0051603: proteolysis involved in cellular protein catabolic process	2.97E-02
105	GO:0009409: response to cold	3.18E-02
106	GO:0006096: glycolytic process	3.26E-02
107	GO:0009626: plant-type hypersensitive response	3.41E-02
108	GO:0005975: carbohydrate metabolic process	3.66E-02
109	GO:0009735: response to cytokinin	3.78E-02
110	GO:0018105: peptidyl-serine phosphorylation	3.80E-02
111	GO:0051726: regulation of cell cycle	3.88E-02
112	GO:0009738: abscisic acid-activated signaling pathway	4.00E-02

Rank	GO Term	Adjusted P value
1	GO:0004746: riboflavin synthase activity	0.00E+00
2	GO:0031517: red light photoreceptor activity	0.00E+00
3	GO:0004151: dihydroorotase activity	0.00E+00
4	GO:0010471: GDP-galactose:mannose-1-phosphate guanylyltransferase activity	0.00E+00
5	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
6	GO:0010472: GDP-galactose:glucose-1-phosphate guanylyltransferase activity	0.00E+00
7	GO:0004056: argininosuccinate lyase activity	0.00E+00
8	GO:0008928: mannose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
9	GO:0017168: 5-oxoprolinase (ATP-hydrolyzing) activity	0.00E+00
10	GO:0010474: glucose-1-phosphate guanylyltransferase (GDP) activity	0.00E+00
11	GO:0010473: GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity	0.00E+00
12	GO:0050152: omega-amidase activity	0.00E+00
13	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
14	GO:0010475: galactose-1-phosphate guanylyltransferase (GDP) activity	1.06E-04
15	GO:0080047: GDP-L-galactose phosphorylase activity	1.06E-04
16	GO:1990841: promoter-specific chromatin binding	1.06E-04
17	GO:0031516: far-red light photoreceptor activity	1.06E-04
18	GO:0000248: C-5 sterol desaturase activity	1.06E-04
19	GO:0080048: GDP-D-glucose phosphorylase activity	1.06E-04
20	GO:0046480: galactolipid galactosyltransferase activity	1.06E-04
21	GO:0080079: cellobiose glucosidase activity	1.06E-04
22	GO:0004826: phenylalanine-tRNA ligase activity	2.48E-04
23	GO:1990585: hydroxyproline O-arabinosyltransferase activity	2.48E-04
24	GO:0004534: 5'-3' exoribonuclease activity	2.48E-04
25	GO:0004061: arylformamidase activity	2.48E-04
26	GO:0009883: red or far-red light photoreceptor activity	2.48E-04
27	GO:0004557: alpha-galactosidase activity	4.12E-04
28	GO:0031683: G-protein beta/gamma-subunit complex binding	4.12E-04
29	GO:0008020: G-protein coupled photoreceptor activity	4.12E-04
30	GO:0052692: raffinose alpha-galactosidase activity	4.12E-04
31	GO:0001664: G-protein coupled receptor binding	4.12E-04
32	GO:0035529: NADH pyrophosphatase activity	5.92E-04
33	GO:0004550: nucleoside diphosphate kinase activity	5.92E-04
34	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	5.92E-04
35	GO:0000254: C-4 methylsterol oxidase activity	5.92E-04
36	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	7.86E-04
37	GO:0010011: auxin binding	7.86E-04
38	GO:0008409: 5'-3' exonuclease activity	7.86E-04
39	GO:0031177: phosphopantetheine binding	1.21E-03
40	GO:0080046: quercetin 4'-O-glucosyltransferase activity	1.21E-03
41	GO:0000035: acyl binding	1.45E-03
42	GO:0004602: glutathione peroxidase activity	1.45E-03
43	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.45E-03
44	GO:0005085: guanyl-nucleotide exchange factor activity	1.70E-03
45	GO:0102425: myricetin 3-O-glucosyltransferase activity	1.70E-03
46	GO:0102360: daphnetin 3-O-glucosyltransferase activity	1.70E-03
47	GO:0042162: telomeric DNA binding	1.70E-03
48	GO:0050897: cobalt ion binding	1.78E-03
49	GO:0047893: flavonol 3-O-glucosyltransferase activity	1.97E-03
50	GO:0015288: porin activity	1.97E-03
51	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	1.97E-03
52	GO:0004034: aldose 1-epimerase activity	1.97E-03
53	GO:0016788: hydrolase activity, acting on ester bonds	2.05E-03
54	GO:0008308: voltage-gated anion channel activity	2.24E-03
55	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.53E-03
56	GO:0052689: carboxylic ester hydrolase activity	2.98E-03
57	GO:0004673: protein histidine kinase activity	3.15E-03
58	GO:0008047: enzyme activator activity	3.15E-03
59	GO:0008794: arsenate reductase (glutaredoxin) activity	3.47E-03
60	GO:0008234: cysteine-type peptidase activity	3.71E-03
61	GO:0000049: tRNA binding	3.81E-03
62	GO:0008378: galactosyltransferase activity	3.81E-03
63	GO:0000155: phosphorelay sensor kinase activity	4.16E-03
64	GO:0022857: transmembrane transporter activity	4.47E-03
65	GO:0008266: poly(U) RNA binding	4.52E-03
66	GO:0005217: intracellular ligand-gated ion channel activity	4.88E-03
67	GO:0004970: ionotropic glutamate receptor activity	4.88E-03
68	GO:0015035: protein disulfide oxidoreductase activity	4.89E-03
69	GO:0004298: threonine-type endopeptidase activity	6.46E-03
70	GO:0035251: UDP-glucosyltransferase activity	6.46E-03
71	GO:0003756: protein disulfide isomerase activity	7.74E-03
72	GO:0003727: single-stranded RNA binding	7.74E-03
73	GO:0018024: histone-lysine N-methyltransferase activity	8.19E-03
74	GO:0005102: receptor binding	8.19E-03
75	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	9.10E-03
76	GO:0030276: clathrin binding	9.10E-03
77	GO:0008080: N-acetyltransferase activity	9.10E-03
78	GO:0004872: receptor activity	1.01E-02
79	GO:0004197: cysteine-type endopeptidase activity	1.11E-02
80	GO:0008168: methyltransferase activity	1.22E-02
81	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.48E-02
82	GO:0003735: structural constituent of ribosome	1.50E-02
83	GO:0030247: polysaccharide binding	1.54E-02
84	GO:0004683: calmodulin-dependent protein kinase activity	1.54E-02
85	GO:0008236: serine-type peptidase activity	1.59E-02
86	GO:0016787: hydrolase activity	1.67E-02
87	GO:0003746: translation elongation factor activity	1.95E-02
88	GO:0003697: single-stranded DNA binding	1.95E-02
89	GO:0004871: signal transducer activity	1.98E-02
90	GO:0003993: acid phosphatase activity	2.02E-02
91	GO:0008422: beta-glucosidase activity	2.08E-02
92	GO:0050661: NADP binding	2.14E-02
93	GO:0004364: glutathione transferase activity	2.27E-02
94	GO:0004185: serine-type carboxypeptidase activity	2.34E-02
95	GO:0051537: 2 iron, 2 sulfur cluster binding	2.47E-02
96	GO:0009055: electron carrier activity	2.50E-02
97	GO:0051287: NAD binding	2.68E-02
98	GO:0016298: lipase activity	2.97E-02
99	GO:0016757: transferase activity, transferring glycosyl groups	3.31E-02
100	GO:0080043: quercetin 3-O-glucosyltransferase activity	3.49E-02
101	GO:0080044: quercetin 7-O-glucosyltransferase activity	3.49E-02
102	GO:0003729: mRNA binding	3.58E-02
103	GO:0019843: rRNA binding	4.36E-02
104	GO:0008565: protein transporter activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:1990429: peroxisomal importomer complex	1.06E-04
2	GO:0005773: vacuole	2.06E-04
3	GO:0005697: telomerase holoenzyme complex	2.48E-04
4	GO:0005764: lysosome	2.49E-04
5	GO:0031519: PcG protein complex	4.12E-04
6	GO:0005783: endoplasmic reticulum	4.48E-04
7	GO:0005849: mRNA cleavage factor complex	5.92E-04
8	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	7.86E-04
9	GO:0005801: cis-Golgi network	1.45E-03
10	GO:0009707: chloroplast outer membrane	1.54E-03
11	GO:0031359: integral component of chloroplast outer membrane	1.70E-03
12	GO:0005829: cytosol	2.07E-03
13	GO:0005677: chromatin silencing complex	2.24E-03
14	GO:0046930: pore complex	2.24E-03
15	GO:0019773: proteasome core complex, alpha-subunit complex	2.24E-03
16	GO:0016604: nuclear body	2.84E-03
17	GO:0009508: plastid chromosome	4.16E-03
18	GO:0005753: mitochondrial proton-transporting ATP synthase complex	4.88E-03
19	GO:0005794: Golgi apparatus	5.08E-03
20	GO:0005758: mitochondrial intermembrane space	5.65E-03
21	GO:0005840: ribosome	5.68E-03
22	GO:0070469: respiratory chain	6.05E-03
23	GO:0005741: mitochondrial outer membrane	6.46E-03
24	GO:0005839: proteasome core complex	6.46E-03
25	GO:0009536: plastid	7.21E-03
26	GO:0030136: clathrin-coated vesicle	8.19E-03
27	GO:0022626: cytosolic ribosome	8.42E-03
28	GO:0005774: vacuolar membrane	1.08E-02
29	GO:0009295: nucleoid	1.26E-02
30	GO:0005778: peroxisomal membrane	1.26E-02
31	GO:0009507: chloroplast	1.26E-02
32	GO:0005618: cell wall	1.36E-02
33	GO:0005788: endoplasmic reticulum lumen	1.42E-02
34	GO:0005802: trans-Golgi network	1.62E-02
35	GO:0015934: large ribosomal subunit	1.83E-02
36	GO:0005768: endosome	1.91E-02
37	GO:0000502: proteasome complex	2.89E-02
38	GO:0005747: mitochondrial respiratory chain complex I	3.33E-02
39	GO:0016607: nuclear speck	3.33E-02
40	GO:0005834: heterotrimeric G-protein complex	3.41E-02
41	GO:0012505: endomembrane system	3.64E-02
42	GO:0005789: endoplasmic reticulum membrane	3.69E-02
43	GO:0005576: extracellular region	4.07E-02
44	GO:0009543: chloroplast thylakoid lumen	4.36E-02