GO Enrichment Analysis of Co-expressed Genes with
AT1G31335
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010966: regulation of phosphate transport | 0.00E+00 |
| 2 | GO:0061157: mRNA destabilization | 0.00E+00 |
| 3 | GO:0009715: chalcone biosynthetic process | 0.00E+00 |
| 4 | GO:2000042: negative regulation of double-strand break repair via homologous recombination | 0.00E+00 |
| 5 | GO:0007172: signal complex assembly | 0.00E+00 |
| 6 | GO:0018023: peptidyl-lysine trimethylation | 0.00E+00 |
| 7 | GO:0042493: response to drug | 0.00E+00 |
| 8 | GO:0015979: photosynthesis | 3.70E-13 |
| 9 | GO:0042549: photosystem II stabilization | 8.86E-07 |
| 10 | GO:0018298: protein-chromophore linkage | 1.97E-06 |
| 11 | GO:0018026: peptidyl-lysine monomethylation | 2.37E-06 |
| 12 | GO:0010206: photosystem II repair | 7.84E-06 |
| 13 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.97E-05 |
| 14 | GO:0010027: thylakoid membrane organization | 2.57E-05 |
| 15 | GO:0009765: photosynthesis, light harvesting | 3.60E-05 |
| 16 | GO:0009768: photosynthesis, light harvesting in photosystem I | 6.87E-05 |
| 17 | GO:0030091: protein repair | 1.97E-04 |
| 18 | GO:0065002: intracellular protein transmembrane transport | 2.25E-04 |
| 19 | GO:0043686: co-translational protein modification | 2.25E-04 |
| 20 | GO:0043007: maintenance of rDNA | 2.25E-04 |
| 21 | GO:0034337: RNA folding | 2.25E-04 |
| 22 | GO:0043953: protein transport by the Tat complex | 2.25E-04 |
| 23 | GO:1904966: positive regulation of vitamin E biosynthetic process | 2.25E-04 |
| 24 | GO:0000481: maturation of 5S rRNA | 2.25E-04 |
| 25 | GO:1904964: positive regulation of phytol biosynthetic process | 2.25E-04 |
| 26 | GO:0010205: photoinhibition | 3.51E-04 |
| 27 | GO:0015995: chlorophyll biosynthetic process | 4.54E-04 |
| 28 | GO:0009773: photosynthetic electron transport in photosystem I | 4.76E-04 |
| 29 | GO:0019684: photosynthesis, light reaction | 4.76E-04 |
| 30 | GO:0009073: aromatic amino acid family biosynthetic process | 4.76E-04 |
| 31 | GO:0080181: lateral root branching | 5.00E-04 |
| 32 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 5.00E-04 |
| 33 | GO:0035304: regulation of protein dephosphorylation | 5.00E-04 |
| 34 | GO:0009629: response to gravity | 5.00E-04 |
| 35 | GO:0010207: photosystem II assembly | 6.96E-04 |
| 36 | GO:0005977: glycogen metabolic process | 8.13E-04 |
| 37 | GO:0009405: pathogenesis | 8.13E-04 |
| 38 | GO:0006020: inositol metabolic process | 1.16E-03 |
| 39 | GO:0071484: cellular response to light intensity | 1.16E-03 |
| 40 | GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity | 1.16E-03 |
| 41 | GO:0009650: UV protection | 1.16E-03 |
| 42 | GO:1901332: negative regulation of lateral root development | 1.16E-03 |
| 43 | GO:0010021: amylopectin biosynthetic process | 1.54E-03 |
| 44 | GO:0015976: carbon utilization | 1.54E-03 |
| 45 | GO:0006109: regulation of carbohydrate metabolic process | 1.54E-03 |
| 46 | GO:0015994: chlorophyll metabolic process | 1.54E-03 |
| 47 | GO:0022622: root system development | 1.54E-03 |
| 48 | GO:0006552: leucine catabolic process | 1.54E-03 |
| 49 | GO:0006021: inositol biosynthetic process | 1.54E-03 |
| 50 | GO:0031365: N-terminal protein amino acid modification | 1.97E-03 |
| 51 | GO:0035434: copper ion transmembrane transport | 1.97E-03 |
| 52 | GO:0006656: phosphatidylcholine biosynthetic process | 1.97E-03 |
| 53 | GO:0046855: inositol phosphate dephosphorylation | 2.43E-03 |
| 54 | GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione | 2.43E-03 |
| 55 | GO:0042793: transcription from plastid promoter | 2.43E-03 |
| 56 | GO:0045454: cell redox homeostasis | 2.73E-03 |
| 57 | GO:0030488: tRNA methylation | 2.91E-03 |
| 58 | GO:0032880: regulation of protein localization | 3.43E-03 |
| 59 | GO:0071446: cellular response to salicylic acid stimulus | 3.43E-03 |
| 60 | GO:0010196: nonphotochemical quenching | 3.43E-03 |
| 61 | GO:0009769: photosynthesis, light harvesting in photosystem II | 3.43E-03 |
| 62 | GO:1900057: positive regulation of leaf senescence | 3.43E-03 |
| 63 | GO:0009645: response to low light intensity stimulus | 3.43E-03 |
| 64 | GO:0022904: respiratory electron transport chain | 3.43E-03 |
| 65 | GO:0031540: regulation of anthocyanin biosynthetic process | 3.98E-03 |
| 66 | GO:0009642: response to light intensity | 3.98E-03 |
| 67 | GO:0032508: DNA duplex unwinding | 3.98E-03 |
| 68 | GO:0016311: dephosphorylation | 4.10E-03 |
| 69 | GO:2000031: regulation of salicylic acid mediated signaling pathway | 4.56E-03 |
| 70 | GO:0010218: response to far red light | 4.75E-03 |
| 71 | GO:0009637: response to blue light | 5.46E-03 |
| 72 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.79E-03 |
| 73 | GO:0048829: root cap development | 6.45E-03 |
| 74 | GO:0006782: protoporphyrinogen IX biosynthetic process | 6.45E-03 |
| 75 | GO:0010114: response to red light | 7.04E-03 |
| 76 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.13E-03 |
| 77 | GO:0043085: positive regulation of catalytic activity | 7.13E-03 |
| 78 | GO:0071365: cellular response to auxin stimulus | 7.84E-03 |
| 79 | GO:0006790: sulfur compound metabolic process | 7.84E-03 |
| 80 | GO:0018107: peptidyl-threonine phosphorylation | 8.57E-03 |
| 81 | GO:0009767: photosynthetic electron transport chain | 8.57E-03 |
| 82 | GO:2000012: regulation of auxin polar transport | 8.57E-03 |
| 83 | GO:0010628: positive regulation of gene expression | 8.57E-03 |
| 84 | GO:0009934: regulation of meristem structural organization | 9.33E-03 |
| 85 | GO:0006302: double-strand break repair | 9.33E-03 |
| 86 | GO:0046854: phosphatidylinositol phosphorylation | 1.01E-02 |
| 87 | GO:0019853: L-ascorbic acid biosynthetic process | 1.01E-02 |
| 88 | GO:0010030: positive regulation of seed germination | 1.01E-02 |
| 89 | GO:0006825: copper ion transport | 1.26E-02 |
| 90 | GO:0048511: rhythmic process | 1.34E-02 |
| 91 | GO:0019915: lipid storage | 1.34E-02 |
| 92 | GO:0061077: chaperone-mediated protein folding | 1.34E-02 |
| 93 | GO:0009269: response to desiccation | 1.34E-02 |
| 94 | GO:0051321: meiotic cell cycle | 1.34E-02 |
| 95 | GO:0019748: secondary metabolic process | 1.43E-02 |
| 96 | GO:0006012: galactose metabolic process | 1.53E-02 |
| 97 | GO:0009411: response to UV | 1.53E-02 |
| 98 | GO:0032259: methylation | 1.55E-02 |
| 99 | GO:0005975: carbohydrate metabolic process | 1.61E-02 |
| 100 | GO:0009561: megagametogenesis | 1.62E-02 |
| 101 | GO:0006281: DNA repair | 1.63E-02 |
| 102 | GO:0009789: positive regulation of abscisic acid-activated signaling pathway | 1.71E-02 |
| 103 | GO:0070417: cellular response to cold | 1.71E-02 |
| 104 | GO:0008284: positive regulation of cell proliferation | 1.71E-02 |
| 105 | GO:0042631: cellular response to water deprivation | 1.81E-02 |
| 106 | GO:0009958: positive gravitropism | 1.91E-02 |
| 107 | GO:0006662: glycerol ether metabolic process | 1.91E-02 |
| 108 | GO:0042752: regulation of circadian rhythm | 2.01E-02 |
| 109 | GO:0009646: response to absence of light | 2.01E-02 |
| 110 | GO:0019252: starch biosynthetic process | 2.11E-02 |
| 111 | GO:0006635: fatty acid beta-oxidation | 2.22E-02 |
| 112 | GO:0071554: cell wall organization or biogenesis | 2.22E-02 |
| 113 | GO:0032502: developmental process | 2.32E-02 |
| 114 | GO:0048235: pollen sperm cell differentiation | 2.32E-02 |
| 115 | GO:0009567: double fertilization forming a zygote and endosperm | 2.54E-02 |
| 116 | GO:0009817: defense response to fungus, incompatible interaction | 3.48E-02 |
| 117 | GO:0055114: oxidation-reduction process | 3.51E-02 |
| 118 | GO:0009813: flavonoid biosynthetic process | 3.61E-02 |
| 119 | GO:0009658: chloroplast organization | 3.63E-02 |
| 120 | GO:0009834: plant-type secondary cell wall biogenesis | 3.73E-02 |
| 121 | GO:0009631: cold acclimation | 3.86E-02 |
| 122 | GO:0048527: lateral root development | 3.86E-02 |
| 123 | GO:0009409: response to cold | 4.01E-02 |
| 124 | GO:0034599: cellular response to oxidative stress | 4.25E-02 |
| 125 | GO:0006810: transport | 4.51E-02 |
| 126 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 4.64E-02 |
| 127 | GO:0009926: auxin polar transport | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor | 0.00E+00 |
| 2 | GO:0010349: L-galactose dehydrogenase activity | 0.00E+00 |
| 3 | GO:0046406: magnesium protoporphyrin IX methyltransferase activity | 0.00E+00 |
| 4 | GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors | 0.00E+00 |
| 5 | GO:0004174: electron-transferring-flavoprotein dehydrogenase activity | 0.00E+00 |
| 6 | GO:0016210: naringenin-chalcone synthase activity | 0.00E+00 |
| 7 | GO:0048039: ubiquinone binding | 0.00E+00 |
| 8 | GO:0016168: chlorophyll binding | 2.87E-05 |
| 9 | GO:0016279: protein-lysine N-methyltransferase activity | 3.60E-05 |
| 10 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 3.60E-05 |
| 11 | GO:0031409: pigment binding | 4.99E-05 |
| 12 | GO:0004462: lactoylglutathione lyase activity | 8.46E-05 |
| 13 | GO:0033743: peptide-methionine (R)-S-oxide reductase activity | 1.17E-04 |
| 14 | GO:0004033: aldo-keto reductase (NADP) activity | 1.97E-04 |
| 15 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 2.25E-04 |
| 16 | GO:0003985: acetyl-CoA C-acetyltransferase activity | 2.25E-04 |
| 17 | GO:0010242: oxygen evolving activity | 2.25E-04 |
| 18 | GO:0042586: peptide deformylase activity | 2.25E-04 |
| 19 | GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity | 2.25E-04 |
| 20 | GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity | 2.25E-04 |
| 21 | GO:0047746: chlorophyllase activity | 5.00E-04 |
| 22 | GO:0016868: intramolecular transferase activity, phosphotransferases | 5.00E-04 |
| 23 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.00E-04 |
| 24 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.00E-04 |
| 25 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.00E-04 |
| 26 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.00E-04 |
| 27 | GO:0019156: isoamylase activity | 5.00E-04 |
| 28 | GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase | 5.00E-04 |
| 29 | GO:0000234: phosphoethanolamine N-methyltransferase activity | 5.00E-04 |
| 30 | GO:0031072: heat shock protein binding | 6.19E-04 |
| 31 | GO:0008266: poly(U) RNA binding | 6.96E-04 |
| 32 | GO:0004324: ferredoxin-NADP+ reductase activity | 8.13E-04 |
| 33 | GO:0003913: DNA photolyase activity | 8.13E-04 |
| 34 | GO:0090729: toxin activity | 8.13E-04 |
| 35 | GO:0005528: FK506 binding | 9.55E-04 |
| 36 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 1.16E-03 |
| 37 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 1.16E-03 |
| 38 | GO:0016851: magnesium chelatase activity | 1.16E-03 |
| 39 | GO:0080032: methyl jasmonate esterase activity | 1.54E-03 |
| 40 | GO:0043495: protein anchor | 1.54E-03 |
| 41 | GO:0003959: NADPH dehydrogenase activity | 1.97E-03 |
| 42 | GO:0015035: protein disulfide oxidoreductase activity | 2.25E-03 |
| 43 | GO:0048038: quinone binding | 2.30E-03 |
| 44 | GO:0080030: methyl indole-3-acetate esterase activity | 2.43E-03 |
| 45 | GO:0042578: phosphoric ester hydrolase activity | 2.43E-03 |
| 46 | GO:0004556: alpha-amylase activity | 2.43E-03 |
| 47 | GO:0008113: peptide-methionine (S)-S-oxide reductase activity | 2.91E-03 |
| 48 | GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity | 2.91E-03 |
| 49 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 2.91E-03 |
| 50 | GO:0009881: photoreceptor activity | 3.43E-03 |
| 51 | GO:0019899: enzyme binding | 3.43E-03 |
| 52 | GO:0046872: metal ion binding | 4.05E-03 |
| 53 | GO:0009055: electron carrier activity | 4.17E-03 |
| 54 | GO:0005375: copper ion transmembrane transporter activity | 4.56E-03 |
| 55 | GO:0008173: RNA methyltransferase activity | 4.56E-03 |
| 56 | GO:0030145: manganese ion binding | 4.98E-03 |
| 57 | GO:0003993: acid phosphatase activity | 5.71E-03 |
| 58 | GO:0042802: identical protein binding | 5.89E-03 |
| 59 | GO:0008047: enzyme activator activity | 6.45E-03 |
| 60 | GO:0015020: glucuronosyltransferase activity | 6.45E-03 |
| 61 | GO:0008378: galactosyltransferase activity | 7.84E-03 |
| 62 | GO:0004089: carbonate dehydratase activity | 8.57E-03 |
| 63 | GO:0008083: growth factor activity | 9.33E-03 |
| 64 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.16E-02 |
| 65 | GO:0004857: enzyme inhibitor activity | 1.17E-02 |
| 66 | GO:0008408: 3'-5' exonuclease activity | 1.34E-02 |
| 67 | GO:0033612: receptor serine/threonine kinase binding | 1.34E-02 |
| 68 | GO:0051082: unfolded protein binding | 1.36E-02 |
| 69 | GO:0022891: substrate-specific transmembrane transporter activity | 1.53E-02 |
| 70 | GO:0003727: single-stranded RNA binding | 1.62E-02 |
| 71 | GO:0003756: protein disulfide isomerase activity | 1.62E-02 |
| 72 | GO:0047134: protein-disulfide reductase activity | 1.71E-02 |
| 73 | GO:0004791: thioredoxin-disulfide reductase activity | 2.01E-02 |
| 74 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 2.43E-02 |
| 75 | GO:0008483: transaminase activity | 2.65E-02 |
| 76 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 2.65E-02 |
| 77 | GO:0016413: O-acetyltransferase activity | 2.77E-02 |
| 78 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.36E-02 |
| 79 | GO:0005096: GTPase activator activity | 3.61E-02 |
| 80 | GO:0051539: 4 iron, 4 sulfur cluster binding | 4.52E-02 |
| 81 | GO:0004185: serine-type carboxypeptidase activity | 4.93E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0017133: mitochondrial electron transfer flavoprotein complex | 0.00E+00 |
| 2 | GO:0043235: receptor complex | 0.00E+00 |
| 3 | GO:0005943: phosphatidylinositol 3-kinase complex, class IA | 0.00E+00 |
| 4 | GO:0010368: chloroplast isoamylase complex | 0.00E+00 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 7.02E-26 |
| 6 | GO:0009507: chloroplast | 3.51E-25 |
| 7 | GO:0009534: chloroplast thylakoid | 5.80E-25 |
| 8 | GO:0009570: chloroplast stroma | 1.91E-13 |
| 9 | GO:0009941: chloroplast envelope | 4.68E-11 |
| 10 | GO:0009579: thylakoid | 2.10E-10 |
| 11 | GO:0010287: plastoglobule | 8.19E-09 |
| 12 | GO:0030095: chloroplast photosystem II | 9.58E-09 |
| 13 | GO:0009543: chloroplast thylakoid lumen | 1.02E-08 |
| 14 | GO:0009538: photosystem I reaction center | 3.84E-06 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.84E-06 |
| 16 | GO:0009523: photosystem II | 1.03E-05 |
| 17 | GO:0009654: photosystem II oxygen evolving complex | 6.87E-05 |
| 18 | GO:0031977: thylakoid lumen | 9.45E-05 |
| 19 | GO:0009522: photosystem I | 1.84E-04 |
| 20 | GO:0019898: extrinsic component of membrane | 2.03E-04 |
| 21 | GO:0031361: integral component of thylakoid membrane | 2.25E-04 |
| 22 | GO:0000791: euchromatin | 2.25E-04 |
| 23 | GO:0009783: photosystem II antenna complex | 2.25E-04 |
| 24 | GO:0000427: plastid-encoded plastid RNA polymerase complex | 5.00E-04 |
| 25 | GO:0030870: Mre11 complex | 5.00E-04 |
| 26 | GO:0030076: light-harvesting complex | 7.77E-04 |
| 27 | GO:0010007: magnesium chelatase complex | 8.13E-04 |
| 28 | GO:0033281: TAT protein transport complex | 8.13E-04 |
| 29 | GO:0009531: secondary cell wall | 1.16E-03 |
| 30 | GO:0009517: PSII associated light-harvesting complex II | 1.54E-03 |
| 31 | GO:0000795: synaptonemal complex | 1.97E-03 |
| 32 | GO:0009533: chloroplast stromal thylakoid | 3.43E-03 |
| 33 | GO:0031305: integral component of mitochondrial inner membrane | 3.98E-03 |
| 34 | GO:0008180: COP9 signalosome | 5.16E-03 |
| 35 | GO:0005740: mitochondrial envelope | 6.45E-03 |
| 36 | GO:0032040: small-subunit processome | 7.84E-03 |
| 37 | GO:0009508: plastid chromosome | 8.57E-03 |
| 38 | GO:0042651: thylakoid membrane | 1.26E-02 |
| 39 | GO:0000785: chromatin | 2.32E-02 |
| 40 | GO:0009295: nucleoid | 2.65E-02 |
| 41 | GO:0019005: SCF ubiquitin ligase complex | 3.48E-02 |
| 42 | GO:0000325: plant-type vacuole | 3.86E-02 |
| 43 | GO:0031969: chloroplast membrane | 4.49E-02 |