co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G31240

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0015717: triose phosphate transport	0.00E+00
6	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
7	GO:0030155: regulation of cell adhesion	0.00E+00
8	GO:0015979: photosynthesis	1.63E-14
9	GO:0009773: photosynthetic electron transport in photosystem I	3.03E-09
10	GO:0009768: photosynthesis, light harvesting in photosystem I	2.07E-06
11	GO:0030388: fructose 1,6-bisphosphate metabolic process	2.41E-06
12	GO:0032544: plastid translation	5.74E-06
13	GO:0010206: photosystem II repair	8.05E-06
14	GO:0006000: fructose metabolic process	8.79E-06
15	GO:0009409: response to cold	1.61E-05
16	GO:0019684: photosynthesis, light reaction	1.85E-05
17	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	2.00E-05
18	GO:0015995: chlorophyll biosynthetic process	3.67E-05
19	GO:0018298: protein-chromophore linkage	4.48E-05
20	GO:0042549: photosystem II stabilization	8.60E-05
21	GO:0009735: response to cytokinin	9.42E-05
22	GO:0009645: response to low light intensity stimulus	1.57E-04
23	GO:0042742: defense response to bacterium	1.62E-04
24	GO:0043953: protein transport by the Tat complex	2.27E-04
25	GO:0065002: intracellular protein transmembrane transport	2.27E-04
26	GO:0043686: co-translational protein modification	2.27E-04
27	GO:0080093: regulation of photorespiration	2.27E-04
28	GO:0043007: maintenance of rDNA	2.27E-04
29	GO:0031998: regulation of fatty acid beta-oxidation	2.27E-04
30	GO:0006002: fructose 6-phosphate metabolic process	2.48E-04
31	GO:0010205: photoinhibition	3.56E-04
32	GO:0035304: regulation of protein dephosphorylation	5.05E-04
33	GO:0018026: peptidyl-lysine monomethylation	5.05E-04
34	GO:0031648: protein destabilization	5.05E-04
35	GO:0006094: gluconeogenesis	6.27E-04
36	GO:0005986: sucrose biosynthetic process	6.27E-04
37	GO:0010207: photosystem II assembly	7.06E-04
38	GO:0080055: low-affinity nitrate transport	8.21E-04
39	GO:0035436: triose phosphate transmembrane transport	8.21E-04
40	GO:0048281: inflorescence morphogenesis	8.21E-04
41	GO:0009644: response to high light intensity	1.08E-03
42	GO:0010148: transpiration	1.17E-03
43	GO:0010731: protein glutathionylation	1.17E-03
44	GO:1901332: negative regulation of lateral root development	1.17E-03
45	GO:0071484: cellular response to light intensity	1.17E-03
46	GO:0061077: chaperone-mediated protein folding	1.17E-03
47	GO:0006412: translation	1.31E-03
48	GO:0006810: transport	1.51E-03
49	GO:0015994: chlorophyll metabolic process	1.56E-03
50	GO:0010600: regulation of auxin biosynthetic process	1.56E-03
51	GO:0015713: phosphoglycerate transport	1.56E-03
52	GO:0010021: amylopectin biosynthetic process	1.56E-03
53	GO:0006808: regulation of nitrogen utilization	1.56E-03
54	GO:0015976: carbon utilization	1.56E-03
55	GO:0009765: photosynthesis, light harvesting	1.56E-03
56	GO:0006109: regulation of carbohydrate metabolic process	1.56E-03
57	GO:0045727: positive regulation of translation	1.56E-03
58	GO:0042254: ribosome biogenesis	1.57E-03
59	GO:0000304: response to singlet oxygen	1.99E-03
60	GO:0016120: carotene biosynthetic process	1.99E-03
61	GO:0031365: N-terminal protein amino acid modification	1.99E-03
62	GO:0006097: glyoxylate cycle	1.99E-03
63	GO:0035434: copper ion transmembrane transport	1.99E-03
64	GO:0010190: cytochrome b6f complex assembly	2.45E-03
65	GO:0009635: response to herbicide	2.45E-03
66	GO:0009643: photosynthetic acclimation	2.45E-03
67	GO:0045454: cell redox homeostasis	2.79E-03
68	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.94E-03
69	GO:1901259: chloroplast rRNA processing	2.94E-03
70	GO:0030488: tRNA methylation	2.94E-03
71	GO:0009955: adaxial/abaxial pattern specification	2.94E-03
72	GO:0010027: thylakoid membrane organization	3.36E-03
73	GO:0010196: nonphotochemical quenching	3.47E-03
74	GO:0009769: photosynthesis, light harvesting in photosystem II	3.47E-03
75	GO:0070370: cellular heat acclimation	3.47E-03
76	GO:0010103: stomatal complex morphogenesis	3.47E-03
77	GO:0010161: red light signaling pathway	3.47E-03
78	GO:0071446: cellular response to salicylic acid stimulus	3.47E-03
79	GO:0010928: regulation of auxin mediated signaling pathway	4.02E-03
80	GO:0005978: glycogen biosynthetic process	4.02E-03
81	GO:0006353: DNA-templated transcription, termination	4.02E-03
82	GO:0009704: de-etiolation	4.02E-03
83	GO:0016311: dephosphorylation	4.16E-03
84	GO:0001558: regulation of cell growth	4.60E-03
85	GO:2000031: regulation of salicylic acid mediated signaling pathway	4.60E-03
86	GO:0009631: cold acclimation	5.06E-03
87	GO:0051865: protein autoubiquitination	5.22E-03
88	GO:0042761: very long-chain fatty acid biosynthetic process	5.85E-03
89	GO:0005982: starch metabolic process	5.85E-03
90	GO:0006779: porphyrin-containing compound biosynthetic process	5.85E-03
91	GO:0006782: protoporphyrinogen IX biosynthetic process	6.51E-03
92	GO:0048829: root cap development	6.51E-03
93	GO:0031627: telomeric loop formation	6.51E-03
94	GO:0006415: translational termination	7.20E-03
95	GO:0009089: lysine biosynthetic process via diaminopimelate	7.20E-03
96	GO:0009073: aromatic amino acid family biosynthetic process	7.20E-03
97	GO:0043085: positive regulation of catalytic activity	7.20E-03
98	GO:0000272: polysaccharide catabolic process	7.20E-03
99	GO:0009750: response to fructose	7.20E-03
100	GO:0018119: peptidyl-cysteine S-nitrosylation	7.20E-03
101	GO:0010015: root morphogenesis	7.20E-03
102	GO:0005983: starch catabolic process	7.92E-03
103	GO:0071365: cellular response to auxin stimulus	7.92E-03
104	GO:0010628: positive regulation of gene expression	8.66E-03
105	GO:0006108: malate metabolic process	8.66E-03
106	GO:0018107: peptidyl-threonine phosphorylation	8.66E-03
107	GO:0009767: photosynthetic electron transport chain	8.66E-03
108	GO:0019253: reductive pentose-phosphate cycle	9.42E-03
109	GO:0009934: regulation of meristem structural organization	9.42E-03
110	GO:0006302: double-strand break repair	9.42E-03
111	GO:0005985: sucrose metabolic process	1.02E-02
112	GO:0010025: wax biosynthetic process	1.10E-02
113	GO:0009944: polarity specification of adaxial/abaxial axis	1.19E-02
114	GO:0007017: microtubule-based process	1.27E-02
115	GO:0006825: copper ion transport	1.27E-02
116	GO:0051302: regulation of cell division	1.27E-02
117	GO:0031408: oxylipin biosynthetic process	1.36E-02
118	GO:0051321: meiotic cell cycle	1.36E-02
119	GO:0019915: lipid storage	1.36E-02
120	GO:0006869: lipid transport	1.43E-02
121	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.45E-02
122	GO:0030245: cellulose catabolic process	1.45E-02
123	GO:0010017: red or far-red light signaling pathway	1.45E-02
124	GO:0009686: gibberellin biosynthetic process	1.54E-02
125	GO:0001944: vasculature development	1.54E-02
126	GO:0016117: carotenoid biosynthetic process	1.73E-02
127	GO:0042631: cellular response to water deprivation	1.83E-02
128	GO:0055114: oxidation-reduction process	1.91E-02
129	GO:0006662: glycerol ether metabolic process	1.93E-02
130	GO:0019252: starch biosynthetic process	2.14E-02
131	GO:0071554: cell wall organization or biogenesis	2.24E-02
132	GO:0048235: pollen sperm cell differentiation	2.35E-02
133	GO:0045490: pectin catabolic process	2.38E-02
134	GO:0071281: cellular response to iron ion	2.46E-02
135	GO:0006310: DNA recombination	2.57E-02
136	GO:0009567: double fertilization forming a zygote and endosperm	2.57E-02
137	GO:0009607: response to biotic stimulus	3.03E-02
138	GO:0009627: systemic acquired resistance	3.15E-02
139	GO:0009658: chloroplast organization	3.68E-02
140	GO:0010218: response to far red light	3.77E-02
141	GO:0009834: plant-type secondary cell wall biogenesis	3.77E-02
142	GO:0010119: regulation of stomatal movement	3.90E-02
143	GO:0045893: positive regulation of transcription, DNA-templated	4.05E-02
144	GO:0009637: response to blue light	4.17E-02
145	GO:0034599: cellular response to oxidative stress	4.30E-02
146	GO:0006099: tricarboxylic acid cycle	4.30E-02
147	GO:0010114: response to red light	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
2	GO:0016166: phytoene dehydrogenase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0009899: ent-kaurene synthase activity	0.00E+00
5	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
6	GO:0019843: rRNA binding	2.47E-07
7	GO:0031409: pigment binding	1.29E-06
8	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	2.41E-06
9	GO:0016168: chlorophyll binding	2.96E-05
10	GO:0008266: poly(U) RNA binding	3.55E-05
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	3.66E-05
12	GO:0010242: oxygen evolving activity	2.27E-04
13	GO:0042586: peptide deformylase activity	2.27E-04
14	GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity	2.27E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.27E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.27E-04
17	GO:0003735: structural constituent of ribosome	2.81E-04
18	GO:0003844: 1,4-alpha-glucan branching enzyme activity	5.05E-04
19	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	5.05E-04
20	GO:0047746: chlorophyllase activity	5.05E-04
21	GO:0010297: heteropolysaccharide binding	5.05E-04
22	GO:0009977: proton motive force dependent protein transmembrane transporter activity	5.05E-04
23	GO:0043169: cation binding	8.21E-04
24	GO:0017150: tRNA dihydrouridine synthase activity	8.21E-04
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	8.21E-04
26	GO:0071917: triose-phosphate transmembrane transporter activity	8.21E-04
27	GO:0080054: low-affinity nitrate transmembrane transporter activity	8.21E-04
28	GO:0004324: ferredoxin-NADP+ reductase activity	8.21E-04
29	GO:0005528: FK506 binding	9.67E-04
30	GO:0016851: magnesium chelatase activity	1.17E-03
31	GO:0016149: translation release factor activity, codon specific	1.17E-03
32	GO:0030570: pectate lyase activity	1.38E-03
33	GO:0019199: transmembrane receptor protein kinase activity	1.56E-03
34	GO:0042277: peptide binding	1.56E-03
35	GO:0015120: phosphoglycerate transmembrane transporter activity	1.56E-03
36	GO:0016279: protein-lysine N-methyltransferase activity	1.56E-03
37	GO:0080032: methyl jasmonate esterase activity	1.56E-03
38	GO:0003959: NADPH dehydrogenase activity	1.99E-03
39	GO:0048038: quinone binding	2.33E-03
40	GO:0016615: malate dehydrogenase activity	2.45E-03
41	GO:0080030: methyl indole-3-acetate esterase activity	2.45E-03
42	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	2.94E-03
43	GO:0030060: L-malate dehydrogenase activity	2.94E-03
44	GO:0051920: peroxiredoxin activity	2.94E-03
45	GO:0004033: aldo-keto reductase (NADP) activity	4.02E-03
46	GO:0016209: antioxidant activity	4.02E-03
47	GO:0005375: copper ion transmembrane transporter activity	4.60E-03
48	GO:0008173: RNA methyltransferase activity	4.60E-03
49	GO:0030145: manganese ion binding	5.06E-03
50	GO:0003747: translation release factor activity	5.22E-03
51	GO:0008047: enzyme activator activity	6.51E-03
52	GO:0003691: double-stranded telomeric DNA binding	7.20E-03
53	GO:0043621: protein self-association	7.73E-03
54	GO:0051537: 2 iron, 2 sulfur cluster binding	7.73E-03
55	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.34E-03
56	GO:0004565: beta-galactosidase activity	8.66E-03
57	GO:0004089: carbonate dehydratase activity	8.66E-03
58	GO:0031072: heat shock protein binding	8.66E-03
59	GO:0004857: enzyme inhibitor activity	1.19E-02
60	GO:0016491: oxidoreductase activity	1.29E-02
61	GO:0033612: receptor serine/threonine kinase binding	1.36E-02
62	GO:0008408: 3'-5' exonuclease activity	1.36E-02
63	GO:0015035: protein disulfide oxidoreductase activity	1.42E-02
64	GO:0008810: cellulase activity	1.54E-02
65	GO:0003756: protein disulfide isomerase activity	1.64E-02
66	GO:0047134: protein-disulfide reductase activity	1.73E-02
67	GO:0009055: electron carrier activity	1.82E-02
68	GO:0016829: lyase activity	1.87E-02
69	GO:0050662: coenzyme binding	2.03E-02
70	GO:0004791: thioredoxin-disulfide reductase activity	2.03E-02
71	GO:0005509: calcium ion binding	2.34E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.46E-02
73	GO:0008289: lipid binding	2.52E-02
74	GO:0008483: transaminase activity	2.68E-02
75	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.68E-02
76	GO:0005200: structural constituent of cytoskeleton	2.68E-02
77	GO:0016413: O-acetyltransferase activity	2.80E-02
78	GO:0000287: magnesium ion binding	3.62E-02
79	GO:0005515: protein binding	3.92E-02
80	GO:0003993: acid phosphatase activity	4.30E-02
81	GO:0004364: glutathione transferase activity	4.85E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0009507: chloroplast	1.54E-34
5	GO:0009535: chloroplast thylakoid membrane	6.92E-34
6	GO:0009534: chloroplast thylakoid	1.72E-32
7	GO:0009579: thylakoid	4.79E-22
8	GO:0009941: chloroplast envelope	2.36E-21
9	GO:0009570: chloroplast stroma	2.03E-19
10	GO:0010287: plastoglobule	1.05E-11
11	GO:0009543: chloroplast thylakoid lumen	1.39E-11
12	GO:0030095: chloroplast photosystem II	9.98E-11
13	GO:0031977: thylakoid lumen	1.95E-10
14	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	9.05E-08
15	GO:0009654: photosystem II oxygen evolving complex	2.07E-06
16	GO:0009538: photosystem I reaction center	3.94E-06
17	GO:0048046: apoplast	7.46E-06
18	GO:0009522: photosystem I	9.11E-06
19	GO:0019898: extrinsic component of membrane	1.06E-05
20	GO:0010319: stromule	2.08E-05
21	GO:0005840: ribosome	3.66E-05
22	GO:0030076: light-harvesting complex	4.28E-05
23	GO:0009523: photosystem II	2.07E-04
24	GO:0009782: photosystem I antenna complex	2.27E-04
25	GO:0000791: euchromatin	2.27E-04
26	GO:0009783: photosystem II antenna complex	2.27E-04
27	GO:0031361: integral component of thylakoid membrane	2.27E-04
28	GO:0030870: Mre11 complex	5.05E-04
29	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.05E-04
30	GO:0010007: magnesium chelatase complex	8.21E-04
31	GO:0009509: chromoplast	8.21E-04
32	GO:0033281: TAT protein transport complex	8.21E-04
33	GO:0042651: thylakoid membrane	1.06E-03
34	GO:0015935: small ribosomal subunit	1.17E-03
35	GO:0030915: Smc5-Smc6 complex	1.99E-03
36	GO:0055035: plastid thylakoid membrane	1.99E-03
37	GO:0000795: synaptonemal complex	1.99E-03
38	GO:0016020: membrane	2.26E-03
39	GO:0009533: chloroplast stromal thylakoid	3.47E-03
40	GO:0009501: amyloplast	4.02E-03
41	GO:0000783: nuclear telomere cap complex	4.60E-03
42	GO:0045298: tubulin complex	5.22E-03
43	GO:0005763: mitochondrial small ribosomal subunit	5.22E-03
44	GO:0031969: chloroplast membrane	1.01E-02
45	GO:0043234: protein complex	1.10E-02
46	GO:0000785: chromatin	2.35E-02
47	GO:0009295: nucleoid	2.68E-02
48	GO:0000325: plant-type vacuole	3.90E-02
49	GO:0015934: large ribosomal subunit	3.90E-02
50	GO:0005874: microtubule	4.40E-02