co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G30230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015746: citrate transport	0.00E+00
2	GO:0007530: sex determination	0.00E+00
3	GO:0046085: adenosine metabolic process	0.00E+00
4	GO:0000740: nuclear membrane fusion	0.00E+00
5	GO:0032211: negative regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0006412: translation	1.73E-64
7	GO:0042254: ribosome biogenesis	1.46E-25
8	GO:0006511: ubiquitin-dependent protein catabolic process	1.40E-09
9	GO:0000028: ribosomal small subunit assembly	5.42E-07
10	GO:0000027: ribosomal large subunit assembly	7.40E-07
11	GO:0051603: proteolysis involved in cellular protein catabolic process	3.06E-05
12	GO:1902626: assembly of large subunit precursor of preribosome	4.00E-05
13	GO:0009651: response to salt stress	1.36E-04
14	GO:0009793: embryo development ending in seed dormancy	2.59E-04
15	GO:0043248: proteasome assembly	3.19E-04
16	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	3.28E-04
17	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	4.25E-04
18	GO:0009240: isopentenyl diphosphate biosynthetic process	5.20E-04
19	GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.20E-04
20	GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	5.20E-04
21	GO:0006407: rRNA export from nucleus	5.20E-04
22	GO:0031468: nuclear envelope reassembly	5.20E-04
23	GO:0046686: response to cadmium ion	5.48E-04
24	GO:0015986: ATP synthesis coupled proton transport	9.20E-04
25	GO:0009245: lipid A biosynthetic process	9.90E-04
26	GO:0006452: translational frameshifting	1.12E-03
27	GO:0010198: synergid death	1.12E-03
28	GO:0051788: response to misfolded protein	1.12E-03
29	GO:0006432: phenylalanyl-tRNA aminoacylation	1.12E-03
30	GO:0045905: positive regulation of translational termination	1.12E-03
31	GO:0050992: dimethylallyl diphosphate biosynthetic process	1.12E-03
32	GO:0045901: positive regulation of translational elongation	1.12E-03
33	GO:0000387: spliceosomal snRNP assembly	1.17E-03
34	GO:0010452: histone H3-K36 methylation	1.83E-03
35	GO:0070919: production of siRNA involved in chromatin silencing by small RNA	1.83E-03
36	GO:0008333: endosome to lysosome transport	1.83E-03
37	GO:1904278: positive regulation of wax biosynthetic process	1.83E-03
38	GO:0002181: cytoplasmic translation	1.83E-03
39	GO:0046417: chorismate metabolic process	1.83E-03
40	GO:0015940: pantothenate biosynthetic process	1.83E-03
41	GO:0045793: positive regulation of cell size	1.83E-03
42	GO:0006760: folic acid-containing compound metabolic process	1.83E-03
43	GO:0060145: viral gene silencing in virus induced gene silencing	1.83E-03
44	GO:0042256: mature ribosome assembly	1.83E-03
45	GO:0007030: Golgi organization	2.59E-03
46	GO:0051085: chaperone mediated protein folding requiring cofactor	2.66E-03
47	GO:0006107: oxaloacetate metabolic process	2.66E-03
48	GO:0006241: CTP biosynthetic process	2.66E-03
49	GO:0009647: skotomorphogenesis	2.66E-03
50	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.66E-03
51	GO:0006165: nucleoside diphosphate phosphorylation	2.66E-03
52	GO:0006228: UTP biosynthetic process	2.66E-03
53	GO:0006168: adenine salvage	2.66E-03
54	GO:0009558: embryo sac cellularization	2.66E-03
55	GO:0032877: positive regulation of DNA endoreduplication	2.66E-03
56	GO:0006166: purine ribonucleoside salvage	2.66E-03
57	GO:0070301: cellular response to hydrogen peroxide	2.66E-03
58	GO:0000398: mRNA splicing, via spliceosome	2.77E-03
59	GO:0009116: nucleoside metabolic process	3.21E-03
60	GO:0006289: nucleotide-excision repair	3.21E-03
61	GO:0006487: protein N-linked glycosylation	3.21E-03
62	GO:0010387: COP9 signalosome assembly	3.58E-03
63	GO:0006183: GTP biosynthetic process	3.58E-03
64	GO:0010363: regulation of plant-type hypersensitive response	3.58E-03
65	GO:0006621: protein retention in ER lumen	3.58E-03
66	GO:0006221: pyrimidine nucleotide biosynthetic process	3.58E-03
67	GO:0032366: intracellular sterol transport	3.58E-03
68	GO:0044205: 'de novo' UMP biosynthetic process	3.58E-03
69	GO:0009165: nucleotide biosynthetic process	3.58E-03
70	GO:0051781: positive regulation of cell division	3.58E-03
71	GO:0016226: iron-sulfur cluster assembly	4.27E-03
72	GO:0044209: AMP salvage	4.59E-03
73	GO:0045454: cell redox homeostasis	5.17E-03
74	GO:0009965: leaf morphogenesis	5.35E-03
75	GO:0006777: Mo-molybdopterin cofactor biosynthetic process	5.69E-03
76	GO:0051568: histone H3-K4 methylation	5.69E-03
77	GO:0000413: protein peptidyl-prolyl isomerization	5.95E-03
78	GO:0015991: ATP hydrolysis coupled proton transport	5.95E-03
79	GO:0009955: adaxial/abaxial pattern specification	6.87E-03
80	GO:1901001: negative regulation of response to salt stress	6.87E-03
81	GO:0000911: cytokinesis by cell plate formation	6.87E-03
82	GO:0000054: ribosomal subunit export from nucleus	6.87E-03
83	GO:0009554: megasporogenesis	6.87E-03
84	GO:0000338: protein deneddylation	8.14E-03
85	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	8.14E-03
86	GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process	8.14E-03
87	GO:0035196: production of miRNAs involved in gene silencing by miRNA	8.14E-03
88	GO:0010044: response to aluminum ion	8.14E-03
89	GO:0032880: regulation of protein localization	8.14E-03
90	GO:0048528: post-embryonic root development	8.14E-03
91	GO:0010090: trichome morphogenesis	9.05E-03
92	GO:0009690: cytokinin metabolic process	9.47E-03
93	GO:0006506: GPI anchor biosynthetic process	9.47E-03
94	GO:0050821: protein stabilization	9.47E-03
95	GO:0031540: regulation of anthocyanin biosynthetic process	9.47E-03
96	GO:0022900: electron transport chain	1.09E-02
97	GO:0001510: RNA methylation	1.09E-02
98	GO:0010204: defense response signaling pathway, resistance gene-independent	1.09E-02
99	GO:0006754: ATP biosynthetic process	1.24E-02
100	GO:0048589: developmental growth	1.24E-02
101	GO:0098656: anion transmembrane transport	1.24E-02
102	GO:0010267: production of ta-siRNAs involved in RNA interference	1.39E-02
103	GO:0010449: root meristem growth	1.39E-02
104	GO:0043069: negative regulation of programmed cell death	1.55E-02
105	GO:0016441: posttranscriptional gene silencing	1.55E-02
106	GO:0072593: reactive oxygen species metabolic process	1.72E-02
107	GO:0009073: aromatic amino acid family biosynthetic process	1.72E-02
108	GO:0016485: protein processing	1.72E-02
109	GO:0048229: gametophyte development	1.72E-02
110	GO:0010015: root morphogenesis	1.72E-02
111	GO:0009735: response to cytokinin	1.73E-02
112	GO:0010043: response to zinc ion	1.75E-02
113	GO:0006820: anion transport	1.90E-02
114	GO:0016925: protein sumoylation	1.90E-02
115	GO:0009853: photorespiration	1.92E-02
116	GO:0006099: tricarboxylic acid cycle	2.00E-02
117	GO:0010102: lateral root morphogenesis	2.08E-02
118	GO:0010628: positive regulation of gene expression	2.08E-02
119	GO:0006626: protein targeting to mitochondrion	2.08E-02
120	GO:0006807: nitrogen compound metabolic process	2.08E-02
121	GO:0006108: malate metabolic process	2.08E-02
122	GO:0048467: gynoecium development	2.27E-02
123	GO:0002237: response to molecule of bacterial origin	2.27E-02
124	GO:0010020: chloroplast fission	2.27E-02
125	GO:0006446: regulation of translational initiation	2.27E-02
126	GO:0010039: response to iron ion	2.46E-02
127	GO:0008283: cell proliferation	2.47E-02
128	GO:0009926: auxin polar transport	2.47E-02
129	GO:0009408: response to heat	2.48E-02
130	GO:0034976: response to endoplasmic reticulum stress	2.66E-02
131	GO:0006406: mRNA export from nucleus	2.86E-02
132	GO:0008299: isoprenoid biosynthetic process	3.07E-02
133	GO:0006457: protein folding	3.10E-02
134	GO:0061077: chaperone-mediated protein folding	3.28E-02
135	GO:0015992: proton transport	3.28E-02
136	GO:0010431: seed maturation	3.28E-02
137	GO:0007005: mitochondrion organization	3.50E-02
138	GO:0006012: galactose metabolic process	3.72E-02
139	GO:0010089: xylem development	3.95E-02
140	GO:0042147: retrograde transport, endosome to Golgi	4.18E-02
141	GO:0006606: protein import into nucleus	4.42E-02
142	GO:0016569: covalent chromatin modification	4.46E-02
143	GO:0009553: embryo sac development	4.59E-02
144	GO:0008360: regulation of cell shape	4.66E-02
145	GO:0006662: glycerol ether metabolic process	4.66E-02
146	GO:0010197: polar nucleus fusion	4.66E-02
147	GO:0061025: membrane fusion	4.91E-02
148	GO:0009908: flower development	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0050152: omega-amidase activity	0.00E+00
2	GO:0061799: cyclic pyranopterin monophosphate synthase activity	0.00E+00
3	GO:0004151: dihydroorotase activity	0.00E+00
4	GO:0003735: structural constituent of ribosome	9.26E-85
5	GO:0004298: threonine-type endopeptidase activity	1.17E-21
6	GO:0003729: mRNA binding	1.96E-19
7	GO:0008233: peptidase activity	2.47E-11
8	GO:0019843: rRNA binding	1.53E-05
9	GO:0001055: RNA polymerase II activity	7.70E-05
10	GO:0001054: RNA polymerase I activity	1.23E-04
11	GO:0004576: oligosaccharyl transferase activity	1.48E-04
12	GO:0001056: RNA polymerase III activity	1.51E-04
13	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	2.26E-04
14	GO:0031177: phosphopantetheine binding	3.19E-04
15	GO:0000035: acyl binding	4.25E-04
16	GO:0050897: cobalt ion binding	4.84E-04
17	GO:0003864: 3-methyl-2-oxobutanoate hydroxymethyltransferase activity	5.20E-04
18	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	5.20E-04
19	GO:0035614: snRNA stem-loop binding	5.20E-04
20	GO:0015137: citrate transmembrane transporter activity	5.20E-04
21	GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process	6.79E-04
22	GO:0043022: ribosome binding	6.79E-04
23	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	8.40E-04
24	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.04E-03
25	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.09E-03
26	GO:1990585: hydroxyproline O-arabinosyltransferase activity	1.12E-03
27	GO:0004106: chorismate mutase activity	1.12E-03
28	GO:0004826: phenylalanine-tRNA ligase activity	1.12E-03
29	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.12E-03
30	GO:0030619: U1 snRNA binding	1.12E-03
31	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.29E-03
32	GO:0005047: signal recognition particle binding	1.83E-03
33	GO:0070181: small ribosomal subunit rRNA binding	1.83E-03
34	GO:0008649: rRNA methyltransferase activity	1.83E-03
35	GO:0070180: large ribosomal subunit rRNA binding	1.83E-03
36	GO:0008430: selenium binding	1.83E-03
37	GO:0004749: ribose phosphate diphosphokinase activity	2.66E-03
38	GO:0003999: adenine phosphoribosyltransferase activity	2.66E-03
39	GO:0004550: nucleoside diphosphate kinase activity	2.66E-03
40	GO:0008097: 5S rRNA binding	2.66E-03
41	GO:0043130: ubiquitin binding	3.21E-03
42	GO:0046923: ER retention sequence binding	3.58E-03
43	GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	3.58E-03
44	GO:0070628: proteasome binding	3.58E-03
45	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	3.58E-03
46	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	3.58E-03
47	GO:0010011: auxin binding	3.58E-03
48	GO:0005496: steroid binding	4.59E-03
49	GO:0031386: protein tag	4.59E-03
50	GO:0031593: polyubiquitin binding	5.69E-03
51	GO:0051117: ATPase binding	5.69E-03
52	GO:0051920: peroxiredoxin activity	6.87E-03
53	GO:0004872: receptor activity	7.41E-03
54	GO:0008235: metalloexopeptidase activity	8.14E-03
55	GO:0042162: telomeric DNA binding	8.14E-03
56	GO:0008121: ubiquinol-cytochrome-c reductase activity	8.14E-03
57	GO:0008143: poly(A) binding	8.14E-03
58	GO:0004034: aldose 1-epimerase activity	9.47E-03
59	GO:0015288: porin activity	9.47E-03
60	GO:0016209: antioxidant activity	9.47E-03
61	GO:0035064: methylated histone binding	9.47E-03
62	GO:0008308: voltage-gated anion channel activity	1.09E-02
63	GO:0008173: RNA methyltransferase activity	1.09E-02
64	GO:0015035: protein disulfide oxidoreductase activity	1.10E-02
65	GO:0003723: RNA binding	1.39E-02
66	GO:0047617: acyl-CoA hydrolase activity	1.39E-02
67	GO:0008047: enzyme activator activity	1.55E-02
68	GO:0004129: cytochrome-c oxidase activity	1.72E-02
69	GO:0046961: proton-transporting ATPase activity, rotational mechanism	1.72E-02
70	GO:0008794: arsenate reductase (glutaredoxin) activity	1.72E-02
71	GO:0004177: aminopeptidase activity	1.72E-02
72	GO:0000049: tRNA binding	1.90E-02
73	GO:0003725: double-stranded RNA binding	2.08E-02
74	GO:0004089: carbonate dehydratase activity	2.08E-02
75	GO:0031072: heat shock protein binding	2.08E-02
76	GO:0004175: endopeptidase activity	2.27E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	2.68E-02
78	GO:0005528: FK506 binding	2.86E-02
79	GO:0004540: ribonuclease activity	3.28E-02
80	GO:0003756: protein disulfide isomerase activity	3.95E-02
81	GO:0047134: protein-disulfide reductase activity	4.18E-02
82	GO:0008080: N-acetyltransferase activity	4.66E-02
83	GO:0004791: thioredoxin-disulfide reductase activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0097361: CIA complex	0.00E+00
2	GO:0016469: proton-transporting two-sector ATPase complex	0.00E+00
3	GO:0043186: P granule	0.00E+00
4	GO:0005675: holo TFIIH complex	0.00E+00
5	GO:0022626: cytosolic ribosome	2.09E-66
6	GO:0005840: ribosome	3.74E-61
7	GO:0022625: cytosolic large ribosomal subunit	1.80E-53
8	GO:0022627: cytosolic small ribosomal subunit	6.99E-33
9	GO:0005829: cytosol	4.79E-32
10	GO:0005737: cytoplasm	2.73E-25
11	GO:0005839: proteasome core complex	1.17E-21
12	GO:0000502: proteasome complex	7.14E-21
13	GO:0005730: nucleolus	9.24E-20
14	GO:0005774: vacuolar membrane	9.18E-15
15	GO:0009506: plasmodesma	5.07E-12
16	GO:0019773: proteasome core complex, alpha-subunit complex	8.99E-11
17	GO:0015934: large ribosomal subunit	9.47E-09
18	GO:0005773: vacuole	2.11E-07
19	GO:0005747: mitochondrial respiratory chain complex I	4.45E-06
20	GO:0005665: DNA-directed RNA polymerase II, core complex	6.15E-06
21	GO:0016020: membrane	8.76E-06
22	GO:0005753: mitochondrial proton-transporting ATP synthase complex	1.40E-05
23	GO:0000419: DNA-directed RNA polymerase V complex	1.77E-05
24	GO:0015935: small ribosomal subunit	3.31E-05
25	GO:0005736: DNA-directed RNA polymerase I complex	5.86E-05
26	GO:0005666: DNA-directed RNA polymerase III complex	7.70E-05
27	GO:0005732: small nucleolar ribonucleoprotein complex	8.76E-05
28	GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	1.48E-04
29	GO:0008250: oligosaccharyltransferase complex	2.26E-04
30	GO:0019774: proteasome core complex, beta-subunit complex	5.20E-04
31	GO:0030686: 90S preribosome	5.20E-04
32	GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)	6.79E-04
33	GO:0045273: respiratory chain complex II	6.79E-04
34	GO:0005618: cell wall	6.87E-04
35	GO:0005685: U1 snRNP	9.90E-04
36	GO:0035145: exon-exon junction complex	1.12E-03
37	GO:0005697: telomerase holoenzyme complex	1.12E-03
38	GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain	1.12E-03
39	GO:0071011: precatalytic spliceosome	1.17E-03
40	GO:0000418: DNA-directed RNA polymerase IV complex	1.36E-03
41	GO:0008541: proteasome regulatory particle, lid subcomplex	1.57E-03
42	GO:0071013: catalytic step 2 spliceosome	1.57E-03
43	GO:0000439: core TFIIH complex	1.83E-03
44	GO:0034719: SMN-Sm protein complex	1.83E-03
45	GO:0019013: viral nucleocapsid	2.05E-03
46	GO:0009507: chloroplast	2.20E-03
47	GO:0005750: mitochondrial respiratory chain complex III	2.31E-03
48	GO:1990726: Lsm1-7-Pat1 complex	2.66E-03
49	GO:0005758: mitochondrial intermembrane space	3.21E-03
50	GO:0045271: respiratory chain complex I	3.54E-03
51	GO:0070469: respiratory chain	3.54E-03
52	GO:0016593: Cdc73/Paf1 complex	3.58E-03
53	GO:0005682: U5 snRNP	3.58E-03
54	GO:0016471: vacuolar proton-transporting V-type ATPase complex	3.58E-03
55	GO:0005759: mitochondrial matrix	4.45E-03
56	GO:0005746: mitochondrial respiratory chain	4.59E-03
57	GO:0005687: U4 snRNP	4.59E-03
58	GO:0097526: spliceosomal tri-snRNP complex	4.59E-03
59	GO:0030904: retromer complex	5.69E-03
60	GO:0005771: multivesicular body	5.69E-03
61	GO:0005762: mitochondrial large ribosomal subunit	6.87E-03
62	GO:0005801: cis-Golgi network	6.87E-03
63	GO:0005689: U12-type spliceosomal complex	6.87E-03
64	GO:0005681: spliceosomal complex	8.36E-03
65	GO:0005688: U6 snRNP	9.47E-03
66	GO:0071004: U2-type prespliceosome	9.47E-03
67	GO:0046540: U4/U6 x U5 tri-snRNP complex	1.09E-02
68	GO:0046930: pore complex	1.09E-02
69	GO:0005788: endoplasmic reticulum lumen	1.22E-02
70	GO:0008180: COP9 signalosome	1.24E-02
71	GO:0005763: mitochondrial small ribosomal subunit	1.24E-02
72	GO:0005686: U2 snRNP	1.55E-02
73	GO:0005852: eukaryotic translation initiation factor 3 complex	1.72E-02
74	GO:0000325: plant-type vacuole	1.75E-02
75	GO:0009508: plastid chromosome	2.08E-02
76	GO:0005769: early endosome	2.66E-02
77	GO:0031966: mitochondrial membrane	3.11E-02
78	GO:0005741: mitochondrial outer membrane	3.28E-02
79	GO:0005739: mitochondrion	3.37E-02
80	GO:0005886: plasma membrane	3.58E-02
81	GO:0005783: endoplasmic reticulum	3.89E-02
82	GO:0016607: nuclear speck	4.07E-02
83	GO:0005834: heterotrimeric G-protein complex	4.19E-02