co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044237: cellular metabolic process	0.00E+00
2	GO:0048867: stem cell fate determination	0.00E+00
3	GO:0043462: regulation of ATPase activity	0.00E+00
4	GO:0055122: response to very low light intensity stimulus	0.00E+00
5	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
6	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	2.33E-08
7	GO:0006364: rRNA processing	3.29E-08
8	GO:0010501: RNA secondary structure unwinding	3.69E-06
9	GO:0009553: embryo sac development	3.73E-06
10	GO:0006413: translational initiation	1.09E-05
11	GO:0006875: cellular metal ion homeostasis	1.36E-05
12	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	4.04E-05
13	GO:0010930: negative regulation of auxin mediated signaling pathway	4.04E-05
14	GO:0009303: rRNA transcription	4.04E-05
15	GO:0080173: male-female gamete recognition during double fertilization	4.04E-05
16	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	4.04E-05
17	GO:1902182: shoot apical meristem development	4.04E-05
18	GO:1901181: negative regulation of cellular response to caffeine	4.04E-05
19	GO:0006417: regulation of translation	7.33E-05
20	GO:0080009: mRNA methylation	1.00E-04
21	GO:0019521: D-gluconate metabolic process	1.00E-04
22	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.00E-04
23	GO:0006610: ribosomal protein import into nucleus	1.00E-04
24	GO:0016104: triterpenoid biosynthetic process	1.73E-04
25	GO:0042780: tRNA 3'-end processing	1.73E-04
26	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	1.73E-04
27	GO:0045604: regulation of epidermal cell differentiation	1.73E-04
28	GO:0006606: protein import into nucleus	1.79E-04
29	GO:0032465: regulation of cytokinesis	2.55E-04
30	GO:0007276: gamete generation	2.55E-04
31	GO:0046345: abscisic acid catabolic process	3.43E-04
32	GO:0045723: positive regulation of fatty acid biosynthetic process	3.43E-04
33	GO:0006457: protein folding	3.83E-04
34	GO:0006405: RNA export from nucleus	4.37E-04
35	GO:0000060: protein import into nucleus, translocation	5.37E-04
36	GO:0009793: embryo development ending in seed dormancy	5.53E-04
37	GO:0048444: floral organ morphogenesis	6.40E-04
38	GO:0010077: maintenance of inflorescence meristem identity	6.40E-04
39	GO:0045995: regulation of embryonic development	7.49E-04
40	GO:0019745: pentacyclic triterpenoid biosynthetic process	7.49E-04
41	GO:0000028: ribosomal small subunit assembly	8.61E-04
42	GO:0009880: embryonic pattern specification	9.77E-04
43	GO:2000024: regulation of leaf development	1.10E-03
44	GO:0006607: NLS-bearing protein import into nucleus	1.10E-03
45	GO:0006098: pentose-phosphate shunt	1.10E-03
46	GO:0006349: regulation of gene expression by genetic imprinting	1.22E-03
47	GO:0008285: negative regulation of cell proliferation	1.49E-03
48	GO:0010152: pollen maturation	1.63E-03
49	GO:0010582: floral meristem determinacy	1.63E-03
50	GO:0009790: embryo development	1.97E-03
51	GO:0010073: meristem maintenance	2.55E-03
52	GO:0051302: regulation of cell division	2.55E-03
53	GO:0006874: cellular calcium ion homeostasis	2.55E-03
54	GO:0007005: mitochondrion organization	2.89E-03
55	GO:0009561: megagametogenesis	3.24E-03
56	GO:0051028: mRNA transport	3.42E-03
57	GO:0010197: polar nucleus fusion	3.80E-03
58	GO:0006342: chromatin silencing	3.80E-03
59	GO:0009960: endosperm development	3.80E-03
60	GO:0048825: cotyledon development	4.19E-03
61	GO:0007264: small GTPase mediated signal transduction	4.58E-03
62	GO:0045892: negative regulation of transcription, DNA-templated	5.36E-03
63	GO:0009911: positive regulation of flower development	5.64E-03
64	GO:0048573: photoperiodism, flowering	6.31E-03
65	GO:0009408: response to heat	6.50E-03
66	GO:0009846: pollen germination	1.12E-02
67	GO:0051301: cell division	1.26E-02
68	GO:0009909: regulation of flower development	1.26E-02
69	GO:0016036: cellular response to phosphate starvation	2.12E-02
70	GO:0009451: RNA modification	2.26E-02
71	GO:0010228: vegetative to reproductive phase transition of meristem	2.30E-02
72	GO:0010468: regulation of gene expression	2.52E-02
73	GO:0042254: ribosome biogenesis	3.08E-02
74	GO:0009860: pollen tube growth	3.20E-02
75	GO:0048366: leaf development	3.41E-02
76	GO:0046686: response to cadmium ion	3.65E-02
77	GO:0032259: methylation	4.53E-02
78	GO:0009751: response to salicylic acid	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0034511: U3 snoRNA binding	0.00E+00
2	GO:0004164: diphthine synthase activity	0.00E+00
3	GO:0000166: nucleotide binding	5.65E-11
4	GO:0008026: ATP-dependent helicase activity	1.02E-07
5	GO:0004004: ATP-dependent RNA helicase activity	2.45E-07
6	GO:0003723: RNA binding	8.66E-07
7	GO:0030515: snoRNA binding	1.02E-05
8	GO:0003743: translation initiation factor activity	1.74E-05
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.04E-05
10	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	1.00E-04
11	GO:0043021: ribonucleoprotein complex binding	1.00E-04
12	GO:0042300: beta-amyrin synthase activity	1.73E-04
13	GO:0019829: cation-transporting ATPase activity	1.73E-04
14	GO:0042781: 3'-tRNA processing endoribonuclease activity	1.73E-04
15	GO:0003713: transcription coactivator activity	1.95E-04
16	GO:0003729: mRNA binding	2.46E-04
17	GO:0042299: lupeol synthase activity	2.55E-04
18	GO:0031369: translation initiation factor binding	5.37E-04
19	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	6.40E-04
20	GO:0017056: structural constituent of nuclear pore	8.61E-04
21	GO:0005487: nucleocytoplasmic transporter activity	1.22E-03
22	GO:0031490: chromatin DNA binding	1.22E-03
23	GO:0005543: phospholipid binding	1.49E-03
24	GO:0001054: RNA polymerase I activity	1.49E-03
25	GO:0008139: nuclear localization sequence binding	1.77E-03
26	GO:0031072: heat shock protein binding	1.77E-03
27	GO:0005388: calcium-transporting ATPase activity	1.77E-03
28	GO:0043130: ubiquitin binding	2.39E-03
29	GO:0005524: ATP binding	3.30E-03
30	GO:0005525: GTP binding	3.31E-03
31	GO:0008536: Ran GTPase binding	3.80E-03
32	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	6.54E-03
33	GO:0042393: histone binding	8.75E-03
34	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.18E-02
35	GO:0051082: unfolded protein binding	1.51E-02
36	GO:0004386: helicase activity	1.60E-02
37	GO:0005515: protein binding	1.74E-02
38	GO:0019843: rRNA binding	1.77E-02
39	GO:0008565: protein transporter activity	2.01E-02
40	GO:0008168: methyltransferase activity	2.95E-02
41	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	4.02E-02
42	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	4.34E-02
43	GO:0003924: GTPase activity	4.67E-02
44	GO:0004519: endonuclease activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0019822: P4 peroxisome	0.00E+00
2	GO:0034455: t-UTP complex	0.00E+00
3	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
4	GO:0036396: MIS complex	0.00E+00
5	GO:0005730: nucleolus	6.54E-10
6	GO:0005634: nucleus	1.71E-07
7	GO:0032040: small-subunit processome	4.12E-07
8	GO:0034399: nuclear periphery	1.36E-05
9	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.64E-05
10	GO:0044613: nuclear pore central transport channel	1.00E-04
11	GO:0070545: PeBoW complex	1.00E-04
12	GO:0005851: eukaryotic translation initiation factor 2B complex	5.37E-04
13	GO:0030687: preribosome, large subunit precursor	7.49E-04
14	GO:0005736: DNA-directed RNA polymerase I complex	1.10E-03
15	GO:0005852: eukaryotic translation initiation factor 3 complex	1.49E-03
16	GO:0031307: integral component of mitochondrial outer membrane	1.63E-03
17	GO:0031965: nuclear membrane	4.19E-03
18	GO:0005643: nuclear pore	6.77E-03
19	GO:0005829: cytosol	9.45E-03
20	GO:0005635: nuclear envelope	1.23E-02
21	GO:0016607: nuclear speck	1.35E-02
22	GO:0005834: heterotrimeric G-protein complex	1.38E-02
23	GO:0009506: plasmodesma	3.67E-02