co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042493: response to drug	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0070125: mitochondrial translational elongation	0.00E+00
4	GO:2000505: regulation of energy homeostasis	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0009715: chalcone biosynthetic process	0.00E+00
7	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
8	GO:0015882: L-ascorbic acid transport	0.00E+00
9	GO:0006114: glycerol biosynthetic process	0.00E+00
10	GO:0015979: photosynthesis	1.35E-09
11	GO:0009637: response to blue light	2.30E-06
12	GO:0010206: photosystem II repair	5.71E-06
13	GO:0009773: photosynthetic electron transport in photosystem I	1.33E-05
14	GO:0010207: photosystem II assembly	2.58E-05
15	GO:0006021: inositol biosynthetic process	2.88E-05
16	GO:0018298: protein-chromophore linkage	3.04E-05
17	GO:0010236: plastoquinone biosynthetic process	4.65E-05
18	GO:0009768: photosynthesis, light harvesting in photosystem I	5.18E-05
19	GO:0042549: photosystem II stabilization	6.86E-05
20	GO:0046855: inositol phosphate dephosphorylation	6.86E-05
21	GO:0010114: response to red light	7.84E-05
22	GO:0048564: photosystem I assembly	1.62E-04
23	GO:0000481: maturation of 5S rRNA	1.98E-04
24	GO:0042371: vitamin K biosynthetic process	1.98E-04
25	GO:0043686: co-translational protein modification	1.98E-04
26	GO:0010028: xanthophyll cycle	1.98E-04
27	GO:0034337: RNA folding	1.98E-04
28	GO:0006419: alanyl-tRNA aminoacylation	1.98E-04
29	GO:0010362: negative regulation of anion channel activity by blue light	1.98E-04
30	GO:0000476: maturation of 4.5S rRNA	1.98E-04
31	GO:0000967: rRNA 5'-end processing	1.98E-04
32	GO:0009657: plastid organization	2.01E-04
33	GO:0009793: embryo development ending in seed dormancy	2.41E-04
34	GO:0010027: thylakoid membrane organization	2.88E-04
35	GO:0009638: phototropism	2.92E-04
36	GO:0016311: dephosphorylation	3.83E-04
37	GO:0019684: photosynthesis, light reaction	3.97E-04
38	GO:0006432: phenylalanyl-tRNA aminoacylation	4.43E-04
39	GO:0018026: peptidyl-lysine monomethylation	4.43E-04
40	GO:0010155: regulation of proton transport	4.43E-04
41	GO:0034470: ncRNA processing	4.43E-04
42	GO:0035304: regulation of protein dephosphorylation	4.43E-04
43	GO:0009629: response to gravity	4.43E-04
44	GO:0006790: sulfur compound metabolic process	4.56E-04
45	GO:0010218: response to far red light	4.64E-04
46	GO:0046854: phosphatidylinositol phosphorylation	6.52E-04
47	GO:0019853: L-ascorbic acid biosynthetic process	6.52E-04
48	GO:0005977: glycogen metabolic process	7.22E-04
49	GO:0061077: chaperone-mediated protein folding	9.64E-04
50	GO:2001141: regulation of RNA biosynthetic process	1.03E-03
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.03E-03
52	GO:0006020: inositol metabolic process	1.03E-03
53	GO:0071484: cellular response to light intensity	1.03E-03
54	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.03E-03
55	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.03E-03
56	GO:0009650: UV protection	1.03E-03
57	GO:0005975: carbohydrate metabolic process	1.04E-03
58	GO:0010021: amylopectin biosynthetic process	1.37E-03
59	GO:0015976: carbon utilization	1.37E-03
60	GO:0009765: photosynthesis, light harvesting	1.37E-03
61	GO:0015994: chlorophyll metabolic process	1.37E-03
62	GO:0006564: L-serine biosynthetic process	1.74E-03
63	GO:0009904: chloroplast accumulation movement	1.74E-03
64	GO:0031365: N-terminal protein amino acid modification	1.74E-03
65	GO:0016558: protein import into peroxisome matrix	1.74E-03
66	GO:0010583: response to cyclopentenone	2.04E-03
67	GO:0042793: transcription from plastid promoter	2.14E-03
68	GO:0009903: chloroplast avoidance movement	2.57E-03
69	GO:0010189: vitamin E biosynthetic process	2.57E-03
70	GO:1901259: chloroplast rRNA processing	2.57E-03
71	GO:0042372: phylloquinone biosynthetic process	2.57E-03
72	GO:0009645: response to low light intensity stimulus	3.03E-03
73	GO:0006400: tRNA modification	3.03E-03
74	GO:0009772: photosynthetic electron transport in photosystem II	3.03E-03
75	GO:0009769: photosynthesis, light harvesting in photosystem II	3.03E-03
76	GO:0015995: chlorophyll biosynthetic process	3.24E-03
77	GO:0032508: DNA duplex unwinding	3.51E-03
78	GO:0031540: regulation of anthocyanin biosynthetic process	3.51E-03
79	GO:0016559: peroxisome fission	3.51E-03
80	GO:0017004: cytochrome complex assembly	4.02E-03
81	GO:0071482: cellular response to light stimulus	4.02E-03
82	GO:0098656: anion transmembrane transport	4.54E-03
83	GO:0010205: photoinhibition	5.10E-03
84	GO:0006949: syncytium formation	5.67E-03
85	GO:0009658: chloroplast organization	5.98E-03
86	GO:0006352: DNA-templated transcription, initiation	6.27E-03
87	GO:0006415: translational termination	6.27E-03
88	GO:0009089: lysine biosynthetic process via diaminopimelate	6.27E-03
89	GO:0009073: aromatic amino acid family biosynthetic process	6.27E-03
90	GO:0009416: response to light stimulus	6.75E-03
91	GO:0005983: starch catabolic process	6.89E-03
92	GO:0010628: positive regulation of gene expression	7.52E-03
93	GO:0006006: glucose metabolic process	7.52E-03
94	GO:0009785: blue light signaling pathway	7.52E-03
95	GO:0010224: response to UV-B	8.16E-03
96	GO:0010020: chloroplast fission	8.19E-03
97	GO:0019253: reductive pentose-phosphate cycle	8.19E-03
98	GO:0010030: positive regulation of seed germination	8.87E-03
99	GO:0006833: water transport	9.57E-03
100	GO:0019762: glucosinolate catabolic process	9.57E-03
101	GO:0006810: transport	1.10E-02
102	GO:0048511: rhythmic process	1.18E-02
103	GO:0009269: response to desiccation	1.18E-02
104	GO:0048278: vesicle docking	1.18E-02
105	GO:0009411: response to UV	1.34E-02
106	GO:0071369: cellular response to ethylene stimulus	1.34E-02
107	GO:0009625: response to insect	1.34E-02
108	GO:0006012: galactose metabolic process	1.34E-02
109	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.34E-02
110	GO:0009561: megagametogenesis	1.42E-02
111	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.50E-02
112	GO:0034220: ion transmembrane transport	1.59E-02
113	GO:0042631: cellular response to water deprivation	1.59E-02
114	GO:0009790: embryo development	1.65E-02
115	GO:0048868: pollen tube development	1.67E-02
116	GO:0061025: membrane fusion	1.76E-02
117	GO:0042752: regulation of circadian rhythm	1.76E-02
118	GO:0019252: starch biosynthetic process	1.85E-02
119	GO:0006635: fatty acid beta-oxidation	1.94E-02
120	GO:0071554: cell wall organization or biogenesis	1.94E-02
121	GO:0010193: response to ozone	1.94E-02
122	GO:0007623: circadian rhythm	1.95E-02
123	GO:0009451: RNA modification	1.99E-02
124	GO:0009828: plant-type cell wall loosening	2.23E-02
125	GO:0009735: response to cytokinin	2.38E-02
126	GO:0006906: vesicle fusion	2.73E-02
127	GO:0010411: xyloglucan metabolic process	2.84E-02
128	GO:0009817: defense response to fungus, incompatible interaction	3.05E-02
129	GO:0009409: response to cold	3.06E-02
130	GO:0000160: phosphorelay signal transduction system	3.16E-02
131	GO:0009813: flavonoid biosynthetic process	3.16E-02
132	GO:0006811: ion transport	3.27E-02
133	GO:0010119: regulation of stomatal movement	3.38E-02
134	GO:0006887: exocytosis	4.08E-02
135	GO:0009926: auxin polar transport	4.32E-02
136	GO:0042546: cell wall biogenesis	4.45E-02
137	GO:0009644: response to high light intensity	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
2	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
3	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
4	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
5	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
6	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
7	GO:0042623: ATPase activity, coupled	0.00E+00
8	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
9	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
10	GO:0005528: FK506 binding	1.06E-06
11	GO:0052832: inositol monophosphate 3-phosphatase activity	1.85E-06
12	GO:0008934: inositol monophosphate 1-phosphatase activity	1.85E-06
13	GO:0052833: inositol monophosphate 4-phosphatase activity	1.85E-06
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.63E-06
15	GO:0031409: pigment binding	3.74E-05
16	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	9.52E-05
17	GO:0019203: carbohydrate phosphatase activity	1.98E-04
18	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.98E-04
19	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.98E-04
20	GO:0050308: sugar-phosphatase activity	1.98E-04
21	GO:0004813: alanine-tRNA ligase activity	1.98E-04
22	GO:0010242: oxygen evolving activity	1.98E-04
23	GO:0042586: peptide deformylase activity	1.98E-04
24	GO:0016168: chlorophyll binding	3.10E-04
25	GO:0047746: chlorophyllase activity	4.43E-04
26	GO:0004617: phosphoglycerate dehydrogenase activity	4.43E-04
27	GO:0004826: phenylalanine-tRNA ligase activity	4.43E-04
28	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.43E-04
29	GO:0019172: glyoxalase III activity	4.43E-04
30	GO:0019156: isoamylase activity	4.43E-04
31	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.43E-04
32	GO:0000049: tRNA binding	4.56E-04
33	GO:0031072: heat shock protein binding	5.18E-04
34	GO:0004565: beta-galactosidase activity	5.18E-04
35	GO:0003993: acid phosphatase activity	5.87E-04
36	GO:0004751: ribose-5-phosphate isomerase activity	7.22E-04
37	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.22E-04
38	GO:0009882: blue light photoreceptor activity	1.03E-03
39	GO:0016851: magnesium chelatase activity	1.03E-03
40	GO:0016149: translation release factor activity, codon specific	1.03E-03
41	GO:0004659: prenyltransferase activity	1.37E-03
42	GO:0016279: protein-lysine N-methyltransferase activity	1.37E-03
43	GO:0001053: plastid sigma factor activity	1.37E-03
44	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.37E-03
45	GO:0016987: sigma factor activity	1.37E-03
46	GO:0004462: lactoylglutathione lyase activity	2.14E-03
47	GO:2001070: starch binding	2.14E-03
48	GO:0000293: ferric-chelate reductase activity	2.14E-03
49	GO:0004556: alpha-amylase activity	2.14E-03
50	GO:0008195: phosphatidate phosphatase activity	2.57E-03
51	GO:0004017: adenylate kinase activity	2.57E-03
52	GO:0016597: amino acid binding	2.61E-03
53	GO:0004033: aldo-keto reductase (NADP) activity	3.51E-03
54	GO:0003747: translation release factor activity	4.54E-03
55	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.54E-03
56	GO:0005509: calcium ion binding	4.89E-03
57	GO:0005198: structural molecule activity	6.57E-03
58	GO:0016787: hydrolase activity	6.97E-03
59	GO:0051287: NAD binding	7.08E-03
60	GO:0008081: phosphoric diester hydrolase activity	7.52E-03
61	GO:0005315: inorganic phosphate transmembrane transporter activity	7.52E-03
62	GO:0004089: carbonate dehydratase activity	7.52E-03
63	GO:0000155: phosphorelay sensor kinase activity	7.52E-03
64	GO:0008266: poly(U) RNA binding	8.19E-03
65	GO:0052689: carboxylic ester hydrolase activity	8.92E-03
66	GO:0004650: polygalacturonase activity	1.03E-02
67	GO:0051082: unfolded protein binding	1.12E-02
68	GO:0019843: rRNA binding	1.41E-02
69	GO:0008514: organic anion transmembrane transporter activity	1.42E-02
70	GO:0003756: protein disulfide isomerase activity	1.42E-02
71	GO:0046872: metal ion binding	1.74E-02
72	GO:0010181: FMN binding	1.76E-02
73	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.94E-02
74	GO:0048038: quinone binding	1.94E-02
75	GO:0008017: microtubule binding	2.04E-02
76	GO:0016413: O-acetyltransferase activity	2.42E-02
77	GO:0042802: identical protein binding	2.48E-02
78	GO:0015250: water channel activity	2.53E-02
79	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.84E-02
80	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.94E-02
81	GO:0000287: magnesium ion binding	2.96E-02
82	GO:0016788: hydrolase activity, acting on ester bonds	3.08E-02
83	GO:0003723: RNA binding	3.44E-02
84	GO:0003729: mRNA binding	3.51E-02
85	GO:0003746: translation elongation factor activity	3.61E-02
86	GO:0000149: SNARE binding	3.84E-02
87	GO:0030246: carbohydrate binding	3.84E-02
88	GO:0050661: NADP binding	3.96E-02
89	GO:0005484: SNAP receptor activity	4.32E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	9.50E-48
3	GO:0009535: chloroplast thylakoid membrane	1.22E-32
4	GO:0009543: chloroplast thylakoid lumen	7.17E-24
5	GO:0009534: chloroplast thylakoid	5.85E-23
6	GO:0009579: thylakoid	2.46E-17
7	GO:0009570: chloroplast stroma	2.42E-14
8	GO:0031977: thylakoid lumen	1.76E-12
9	GO:0009941: chloroplast envelope	6.66E-10
10	GO:0030095: chloroplast photosystem II	5.76E-09
11	GO:0009654: photosystem II oxygen evolving complex	2.07E-08
12	GO:0010287: plastoglobule	1.00E-07
13	GO:0019898: extrinsic component of membrane	1.73E-07
14	GO:0009538: photosystem I reaction center	2.78E-06
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.71E-06
16	GO:0009522: photosystem I	1.42E-04
17	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.43E-04
18	GO:0030076: light-harvesting complex	6.52E-04
19	GO:0010007: magnesium chelatase complex	7.22E-04
20	GO:0042646: plastid nucleoid	1.03E-03
21	GO:0009898: cytoplasmic side of plasma membrane	1.37E-03
22	GO:0009517: PSII associated light-harvesting complex II	1.37E-03
23	GO:0009706: chloroplast inner membrane	1.72E-03
24	GO:0009523: photosystem II	1.79E-03
25	GO:0016020: membrane	1.94E-03
26	GO:0009986: cell surface	3.03E-03
27	GO:0042644: chloroplast nucleoid	4.54E-03
28	GO:0055028: cortical microtubule	5.67E-03
29	GO:0032040: small-subunit processome	6.89E-03
30	GO:0048046: apoplast	6.99E-03
31	GO:0009508: plastid chromosome	7.52E-03
32	GO:0005759: mitochondrial matrix	1.77E-02
33	GO:0009504: cell plate	1.85E-02
34	GO:0005840: ribosome	2.10E-02
35	GO:0005778: peroxisomal membrane	2.33E-02
36	GO:0009295: nucleoid	2.33E-02
37	GO:0009505: plant-type cell wall	2.73E-02
38	GO:0009707: chloroplast outer membrane	3.05E-02
39	GO:0031969: chloroplast membrane	3.74E-02
40	GO:0031201: SNARE complex	4.08E-02