GO Enrichment Analysis of Co-expressed Genes with
AT1G29530
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090470: shoot organ boundary specification | 0.00E+00 |
| 2 | GO:0046294: formaldehyde catabolic process | 0.00E+00 |
| 3 | GO:0018316: peptide cross-linking via L-cystine | 0.00E+00 |
| 4 | GO:0009658: chloroplast organization | 3.10E-06 |
| 5 | GO:0009902: chloroplast relocation | 3.53E-05 |
| 6 | GO:0009903: chloroplast avoidance movement | 1.15E-04 |
| 7 | GO:0034970: histone H3-R2 methylation | 2.22E-04 |
| 8 | GO:0010362: negative regulation of anion channel activity by blue light | 2.22E-04 |
| 9 | GO:0034972: histone H3-R26 methylation | 2.22E-04 |
| 10 | GO:1902265: abscisic acid homeostasis | 2.22E-04 |
| 11 | GO:0034971: histone H3-R17 methylation | 2.22E-04 |
| 12 | GO:0042371: vitamin K biosynthetic process | 2.22E-04 |
| 13 | GO:0071454: cellular response to anoxia | 2.22E-04 |
| 14 | GO:0071461: cellular response to redox state | 2.22E-04 |
| 15 | GO:0080065: 4-alpha-methyl-delta7-sterol oxidation | 2.22E-04 |
| 16 | GO:0015995: chlorophyll biosynthetic process | 4.46E-04 |
| 17 | GO:0010275: NAD(P)H dehydrogenase complex assembly | 4.95E-04 |
| 18 | GO:0010343: singlet oxygen-mediated programmed cell death | 4.95E-04 |
| 19 | GO:0006898: receptor-mediated endocytosis | 4.95E-04 |
| 20 | GO:0080005: photosystem stoichiometry adjustment | 4.95E-04 |
| 21 | GO:0007154: cell communication | 4.95E-04 |
| 22 | GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation | 4.95E-04 |
| 23 | GO:0000256: allantoin catabolic process | 4.95E-04 |
| 24 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 4.95E-04 |
| 25 | GO:0080153: negative regulation of reductive pentose-phosphate cycle | 4.95E-04 |
| 26 | GO:0080185: effector dependent induction by symbiont of host immune response | 4.95E-04 |
| 27 | GO:0005986: sucrose biosynthetic process | 6.09E-04 |
| 28 | GO:0009767: photosynthetic electron transport chain | 6.09E-04 |
| 29 | GO:0031022: nuclear migration along microfilament | 8.05E-04 |
| 30 | GO:0010136: ureide catabolic process | 8.05E-04 |
| 31 | GO:0009150: purine ribonucleotide metabolic process | 8.05E-04 |
| 32 | GO:0071836: nectar secretion | 8.05E-04 |
| 33 | GO:0006696: ergosterol biosynthetic process | 8.05E-04 |
| 34 | GO:0044375: regulation of peroxisome size | 8.05E-04 |
| 35 | GO:0055114: oxidation-reduction process | 9.29E-04 |
| 36 | GO:0007017: microtubule-based process | 1.03E-03 |
| 37 | GO:0006145: purine nucleobase catabolic process | 1.15E-03 |
| 38 | GO:0033014: tetrapyrrole biosynthetic process | 1.15E-03 |
| 39 | GO:0006882: cellular zinc ion homeostasis | 1.15E-03 |
| 40 | GO:2001141: regulation of RNA biosynthetic process | 1.15E-03 |
| 41 | GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly | 1.15E-03 |
| 42 | GO:0010371: regulation of gibberellin biosynthetic process | 1.15E-03 |
| 43 | GO:0071585: detoxification of cadmium ion | 1.53E-03 |
| 44 | GO:0071483: cellular response to blue light | 1.53E-03 |
| 45 | GO:0034613: cellular protein localization | 1.53E-03 |
| 46 | GO:0010021: amylopectin biosynthetic process | 1.53E-03 |
| 47 | GO:0016117: carotenoid biosynthetic process | 1.58E-03 |
| 48 | GO:0010197: polar nucleus fusion | 1.84E-03 |
| 49 | GO:0016120: carotene biosynthetic process | 1.95E-03 |
| 50 | GO:0000304: response to singlet oxygen | 1.95E-03 |
| 51 | GO:0009904: chloroplast accumulation movement | 1.95E-03 |
| 52 | GO:0016123: xanthophyll biosynthetic process | 1.95E-03 |
| 53 | GO:0006555: methionine metabolic process | 2.40E-03 |
| 54 | GO:0000741: karyogamy | 2.40E-03 |
| 55 | GO:0010190: cytochrome b6f complex assembly | 2.40E-03 |
| 56 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.40E-03 |
| 57 | GO:0019761: glucosinolate biosynthetic process | 2.42E-03 |
| 58 | GO:0019509: L-methionine salvage from methylthioadenosine | 2.89E-03 |
| 59 | GO:0010189: vitamin E biosynthetic process | 2.89E-03 |
| 60 | GO:0010019: chloroplast-nucleus signaling pathway | 2.89E-03 |
| 61 | GO:0071805: potassium ion transmembrane transport | 2.91E-03 |
| 62 | GO:0016126: sterol biosynthetic process | 3.26E-03 |
| 63 | GO:1900056: negative regulation of leaf senescence | 3.40E-03 |
| 64 | GO:0030026: cellular manganese ion homeostasis | 3.40E-03 |
| 65 | GO:0007155: cell adhesion | 3.94E-03 |
| 66 | GO:0048564: photosystem I assembly | 3.94E-03 |
| 67 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 3.94E-03 |
| 68 | GO:0009704: de-etiolation | 3.94E-03 |
| 69 | GO:0006102: isocitrate metabolic process | 3.94E-03 |
| 70 | GO:0016559: peroxisome fission | 3.94E-03 |
| 71 | GO:0071482: cellular response to light stimulus | 4.51E-03 |
| 72 | GO:0022900: electron transport chain | 4.51E-03 |
| 73 | GO:0010228: vegetative to reproductive phase transition of meristem | 4.52E-03 |
| 74 | GO:0009821: alkaloid biosynthetic process | 5.11E-03 |
| 75 | GO:0034765: regulation of ion transmembrane transport | 5.11E-03 |
| 76 | GO:0046916: cellular transition metal ion homeostasis | 5.11E-03 |
| 77 | GO:0006783: heme biosynthetic process | 5.11E-03 |
| 78 | GO:0009637: response to blue light | 5.38E-03 |
| 79 | GO:0009638: phototropism | 5.74E-03 |
| 80 | GO:0006779: porphyrin-containing compound biosynthetic process | 5.74E-03 |
| 81 | GO:0009098: leucine biosynthetic process | 5.74E-03 |
| 82 | GO:0048354: mucilage biosynthetic process involved in seed coat development | 5.74E-03 |
| 83 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.74E-03 |
| 84 | GO:1900426: positive regulation of defense response to bacterium | 5.74E-03 |
| 85 | GO:0010192: mucilage biosynthetic process | 6.38E-03 |
| 86 | GO:0051555: flavonol biosynthetic process | 6.38E-03 |
| 87 | GO:0055062: phosphate ion homeostasis | 6.38E-03 |
| 88 | GO:0045036: protein targeting to chloroplast | 6.38E-03 |
| 89 | GO:0009744: response to sucrose | 6.93E-03 |
| 90 | GO:0006508: proteolysis | 7.05E-03 |
| 91 | GO:0006816: calcium ion transport | 7.06E-03 |
| 92 | GO:0008285: negative regulation of cell proliferation | 7.06E-03 |
| 93 | GO:0043085: positive regulation of catalytic activity | 7.06E-03 |
| 94 | GO:0006352: DNA-templated transcription, initiation | 7.06E-03 |
| 95 | GO:0016485: protein processing | 7.06E-03 |
| 96 | GO:0006790: sulfur compound metabolic process | 7.76E-03 |
| 97 | GO:0030048: actin filament-based movement | 8.48E-03 |
| 98 | GO:0009725: response to hormone | 8.48E-03 |
| 99 | GO:0034605: cellular response to heat | 9.23E-03 |
| 100 | GO:0019253: reductive pentose-phosphate cycle | 9.23E-03 |
| 101 | GO:0010207: photosystem II assembly | 9.23E-03 |
| 102 | GO:0007015: actin filament organization | 9.23E-03 |
| 103 | GO:0007031: peroxisome organization | 1.00E-02 |
| 104 | GO:0009825: multidimensional cell growth | 1.00E-02 |
| 105 | GO:0006071: glycerol metabolic process | 1.08E-02 |
| 106 | GO:0010073: meristem maintenance | 1.24E-02 |
| 107 | GO:0006366: transcription from RNA polymerase II promoter | 1.33E-02 |
| 108 | GO:0016226: iron-sulfur cluster assembly | 1.42E-02 |
| 109 | GO:0010227: floral organ abscission | 1.51E-02 |
| 110 | GO:0006817: phosphate ion transport | 1.60E-02 |
| 111 | GO:0070417: cellular response to cold | 1.70E-02 |
| 112 | GO:0042335: cuticle development | 1.79E-02 |
| 113 | GO:0042391: regulation of membrane potential | 1.79E-02 |
| 114 | GO:0010118: stomatal movement | 1.79E-02 |
| 115 | GO:0010182: sugar mediated signaling pathway | 1.89E-02 |
| 116 | GO:0009791: post-embryonic development | 2.09E-02 |
| 117 | GO:0019252: starch biosynthetic process | 2.09E-02 |
| 118 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 2.19E-02 |
| 119 | GO:0007623: circadian rhythm | 2.31E-02 |
| 120 | GO:0030163: protein catabolic process | 2.41E-02 |
| 121 | GO:0010029: regulation of seed germination | 2.97E-02 |
| 122 | GO:0009816: defense response to bacterium, incompatible interaction | 2.97E-02 |
| 123 | GO:0010411: xyloglucan metabolic process | 3.20E-02 |
| 124 | GO:0006950: response to stress | 3.20E-02 |
| 125 | GO:0018298: protein-chromophore linkage | 3.45E-02 |
| 126 | GO:0000160: phosphorelay signal transduction system | 3.57E-02 |
| 127 | GO:0006811: ion transport | 3.70E-02 |
| 128 | GO:0009910: negative regulation of flower development | 3.82E-02 |
| 129 | GO:0009631: cold acclimation | 3.82E-02 |
| 130 | GO:0010043: response to zinc ion | 3.82E-02 |
| 131 | GO:0007568: aging | 3.82E-02 |
| 132 | GO:0006099: tricarboxylic acid cycle | 4.21E-02 |
| 133 | GO:0006810: transport | 4.41E-02 |
| 134 | GO:0030001: metal ion transport | 4.47E-02 |
| 135 | GO:0046777: protein autophosphorylation | 4.73E-02 |
| 136 | GO:0044550: secondary metabolite biosynthetic process | 4.80E-02 |
| 137 | GO:0009640: photomorphogenesis | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0045436: lycopene beta cyclase activity | 0.00E+00 |
| 2 | GO:0009673: low-affinity phosphate transmembrane transporter activity | 0.00E+00 |
| 3 | GO:0047230: flavonol-3-O-glucoside L-rhamnosyltransferase activity | 0.00E+00 |
| 4 | GO:0046905: phytoene synthase activity | 0.00E+00 |
| 5 | GO:0018738: S-formylglutathione hydrolase activity | 0.00E+00 |
| 6 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 7 | GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity | 0.00E+00 |
| 8 | GO:0050342: tocopherol O-methyltransferase activity | 0.00E+00 |
| 9 | GO:0004848: ureidoglycolate hydrolase activity | 1.36E-08 |
| 10 | GO:0004180: carboxypeptidase activity | 8.46E-06 |
| 11 | GO:0048038: quinone binding | 1.16E-05 |
| 12 | GO:0000254: C-4 methylsterol oxidase activity | 1.93E-05 |
| 13 | GO:0016851: magnesium chelatase activity | 1.93E-05 |
| 14 | GO:0046906: tetrapyrrole binding | 2.22E-04 |
| 15 | GO:0015085: calcium ion transmembrane transporter activity | 2.22E-04 |
| 16 | GO:0004325: ferrochelatase activity | 2.22E-04 |
| 17 | GO:0051996: squalene synthase activity | 2.22E-04 |
| 18 | GO:0016783: sulfurtransferase activity | 2.22E-04 |
| 19 | GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity | 2.22E-04 |
| 20 | GO:0004328: formamidase activity | 2.22E-04 |
| 21 | GO:0030941: chloroplast targeting sequence binding | 2.22E-04 |
| 22 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 2.22E-04 |
| 23 | GO:0016784: 3-mercaptopyruvate sulfurtransferase activity | 2.22E-04 |
| 24 | GO:0008237: metallopeptidase activity | 3.09E-04 |
| 25 | GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity | 4.95E-04 |
| 26 | GO:0033201: alpha-1,4-glucan synthase activity | 4.95E-04 |
| 27 | GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity | 4.95E-04 |
| 28 | GO:0004046: aminoacylase activity | 4.95E-04 |
| 29 | GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity | 4.95E-04 |
| 30 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 4.95E-04 |
| 31 | GO:0004450: isocitrate dehydrogenase (NADP+) activity | 4.95E-04 |
| 32 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 4.95E-04 |
| 33 | GO:0003862: 3-isopropylmalate dehydrogenase activity | 4.95E-04 |
| 34 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 4.95E-04 |
| 35 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 4.95E-04 |
| 36 | GO:0005506: iron ion binding | 5.90E-04 |
| 37 | GO:0008430: selenium binding | 8.05E-04 |
| 38 | GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity | 8.05E-04 |
| 39 | GO:0010277: chlorophyllide a oxygenase [overall] activity | 8.05E-04 |
| 40 | GO:0046524: sucrose-phosphate synthase activity | 8.05E-04 |
| 41 | GO:0004373: glycogen (starch) synthase activity | 8.05E-04 |
| 42 | GO:0032947: protein complex scaffold | 8.05E-04 |
| 43 | GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity | 8.05E-04 |
| 44 | GO:0003955: NAD(P)H dehydrogenase (quinone) activity | 8.05E-04 |
| 45 | GO:0050307: sucrose-phosphate phosphatase activity | 8.05E-04 |
| 46 | GO:0008469: histone-arginine N-methyltransferase activity | 8.05E-04 |
| 47 | GO:0016491: oxidoreductase activity | 1.12E-03 |
| 48 | GO:0004176: ATP-dependent peptidase activity | 1.13E-03 |
| 49 | GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity | 1.15E-03 |
| 50 | GO:0004792: thiosulfate sulfurtransferase activity | 1.15E-03 |
| 51 | GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | 1.15E-03 |
| 52 | GO:0009882: blue light photoreceptor activity | 1.15E-03 |
| 53 | GO:0047627: adenylylsulfatase activity | 1.15E-03 |
| 54 | GO:0051861: glycolipid binding | 1.53E-03 |
| 55 | GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | 1.53E-03 |
| 56 | GO:0015369: calcium:proton antiporter activity | 1.53E-03 |
| 57 | GO:0016987: sigma factor activity | 1.53E-03 |
| 58 | GO:0009011: starch synthase activity | 1.53E-03 |
| 59 | GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | 1.53E-03 |
| 60 | GO:0015368: calcium:cation antiporter activity | 1.53E-03 |
| 61 | GO:0001053: plastid sigma factor activity | 1.53E-03 |
| 62 | GO:0004709: MAP kinase kinase kinase activity | 2.40E-03 |
| 63 | GO:0000293: ferric-chelate reductase activity | 2.40E-03 |
| 64 | GO:0016157: sucrose synthase activity | 2.89E-03 |
| 65 | GO:0005242: inward rectifier potassium channel activity | 2.89E-03 |
| 66 | GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | 2.93E-03 |
| 67 | GO:0019899: enzyme binding | 3.40E-03 |
| 68 | GO:0030247: polysaccharide binding | 3.84E-03 |
| 69 | GO:0008236: serine-type peptidase activity | 4.04E-03 |
| 70 | GO:0046914: transition metal ion binding | 4.51E-03 |
| 71 | GO:0004222: metalloendopeptidase activity | 4.68E-03 |
| 72 | GO:0008889: glycerophosphodiester phosphodiesterase activity | 5.11E-03 |
| 73 | GO:0016844: strictosidine synthase activity | 5.74E-03 |
| 74 | GO:0042802: identical protein binding | 5.78E-03 |
| 75 | GO:0004129: cytochrome-c oxidase activity | 7.06E-03 |
| 76 | GO:0016887: ATPase activity | 7.13E-03 |
| 77 | GO:0000287: magnesium ion binding | 7.25E-03 |
| 78 | GO:0051537: 2 iron, 2 sulfur cluster binding | 7.50E-03 |
| 79 | GO:0016788: hydrolase activity, acting on ester bonds | 7.60E-03 |
| 80 | GO:0051287: NAD binding | 8.40E-03 |
| 81 | GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism | 8.48E-03 |
| 82 | GO:0005315: inorganic phosphate transmembrane transporter activity | 8.48E-03 |
| 83 | GO:0031072: heat shock protein binding | 8.48E-03 |
| 84 | GO:0000155: phosphorelay sensor kinase activity | 8.48E-03 |
| 85 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.23E-03 |
| 86 | GO:0003777: microtubule motor activity | 1.04E-02 |
| 87 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.14E-02 |
| 88 | GO:0001046: core promoter sequence-specific DNA binding | 1.16E-02 |
| 89 | GO:0051536: iron-sulfur cluster binding | 1.16E-02 |
| 90 | GO:0015079: potassium ion transmembrane transporter activity | 1.24E-02 |
| 91 | GO:0004499: N,N-dimethylaniline monooxygenase activity | 1.60E-02 |
| 92 | GO:0030551: cyclic nucleotide binding | 1.79E-02 |
| 93 | GO:0005249: voltage-gated potassium channel activity | 1.79E-02 |
| 94 | GO:0008080: N-acetyltransferase activity | 1.89E-02 |
| 95 | GO:0010181: FMN binding | 1.99E-02 |
| 96 | GO:0004872: receptor activity | 2.09E-02 |
| 97 | GO:0016762: xyloglucan:xyloglucosyl transferase activity | 2.19E-02 |
| 98 | GO:0004518: nuclease activity | 2.30E-02 |
| 99 | GO:0008483: transaminase activity | 2.63E-02 |
| 100 | GO:0016798: hydrolase activity, acting on glycosyl bonds | 3.20E-02 |
| 101 | GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | 3.82E-02 |
| 102 | GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | 4.08E-02 |
| 103 | GO:0004712: protein serine/threonine/tyrosine kinase activity | 4.34E-02 |
| 104 | GO:0004497: monooxygenase activity | 4.42E-02 |
| 105 | GO:0050661: NADP binding | 4.47E-02 |
| 106 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.62E-02 |
| 107 | GO:0052689: carboxylic ester hydrolase activity | 4.88E-02 |
| 108 | GO:0004185: serine-type carboxypeptidase activity | 4.88E-02 |
| 109 | GO:0020037: heme binding | 4.89E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 2.98E-19 |
| 2 | GO:0009535: chloroplast thylakoid membrane | 4.81E-07 |
| 3 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 7.65E-06 |
| 4 | GO:0030286: dynein complex | 3.53E-05 |
| 5 | GO:0031969: chloroplast membrane | 4.05E-04 |
| 6 | GO:0010007: magnesium chelatase complex | 8.05E-04 |
| 7 | GO:0009897: external side of plasma membrane | 8.05E-04 |
| 8 | GO:0005875: microtubule associated complex | 8.53E-04 |
| 9 | GO:0042651: thylakoid membrane | 1.03E-03 |
| 10 | GO:0055035: plastid thylakoid membrane | 1.95E-03 |
| 11 | GO:0009570: chloroplast stroma | 2.27E-03 |
| 12 | GO:0005777: peroxisome | 2.82E-03 |
| 13 | GO:0031359: integral component of chloroplast outer membrane | 3.40E-03 |
| 14 | GO:0005773: vacuole | 3.41E-03 |
| 15 | GO:0031982: vesicle | 3.94E-03 |
| 16 | GO:0009501: amyloplast | 3.94E-03 |
| 17 | GO:0005779: integral component of peroxisomal membrane | 4.51E-03 |
| 18 | GO:0043234: protein complex | 1.08E-02 |
| 19 | GO:0009532: plastid stroma | 1.33E-02 |
| 20 | GO:0009706: chloroplast inner membrane | 1.34E-02 |
| 21 | GO:0005778: peroxisomal membrane | 2.63E-02 |
| 22 | GO:0046658: anchored component of plasma membrane | 3.06E-02 |
| 23 | GO:0009707: chloroplast outer membrane | 3.45E-02 |