co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G29395

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1904526: regulation of microtubule binding	0.00E+00
2	GO:0009667: plastid inner membrane organization	0.00E+00
3	GO:0009631: cold acclimation	3.37E-09
4	GO:0009409: response to cold	4.81E-09
5	GO:0042335: cuticle development	7.48E-06
6	GO:0009414: response to water deprivation	3.50E-05
7	GO:0010025: wax biosynthetic process	5.58E-05
8	GO:0035435: phosphate ion transmembrane transport	9.17E-05
9	GO:0009737: response to abscisic acid	1.08E-04
10	GO:0045926: negative regulation of growth	1.27E-04
11	GO:0009415: response to water	2.12E-04
12	GO:0009819: drought recovery	2.12E-04
13	GO:0080051: cutin transport	2.36E-04
14	GO:0033481: galacturonate biosynthetic process	2.36E-04
15	GO:0071588: hydrogen peroxide mediated signaling pathway	2.36E-04
16	GO:0009609: response to symbiotic bacterium	2.36E-04
17	GO:0000302: response to reactive oxygen species	2.47E-04
18	GO:0000038: very long-chain fatty acid metabolic process	5.11E-04
19	GO:0015786: UDP-glucose transport	5.24E-04
20	GO:1901679: nucleotide transmembrane transport	5.24E-04
21	GO:0015709: thiosulfate transport	5.24E-04
22	GO:0071422: succinate transmembrane transport	5.24E-04
23	GO:0031407: oxylipin metabolic process	5.24E-04
24	GO:0010289: homogalacturonan biosynthetic process	5.24E-04
25	GO:0015908: fatty acid transport	5.24E-04
26	GO:0005983: starch catabolic process	5.84E-04
27	GO:0006811: ion transport	6.43E-04
28	GO:0050826: response to freezing	6.63E-04
29	GO:0006633: fatty acid biosynthetic process	7.51E-04
30	GO:0015783: GDP-fucose transport	8.52E-04
31	GO:0046168: glycerol-3-phosphate catabolic process	8.52E-04
32	GO:0080121: AMP transport	8.52E-04
33	GO:0010150: leaf senescence	8.66E-04
34	GO:0050832: defense response to fungus	9.64E-04
35	GO:0009695: jasmonic acid biosynthetic process	1.12E-03
36	GO:0009413: response to flooding	1.21E-03
37	GO:0051259: protein oligomerization	1.21E-03
38	GO:0006624: vacuolar protein processing	1.21E-03
39	GO:0010371: regulation of gibberellin biosynthetic process	1.21E-03
40	GO:1901000: regulation of response to salt stress	1.21E-03
41	GO:0015729: oxaloacetate transport	1.21E-03
42	GO:0072334: UDP-galactose transmembrane transport	1.21E-03
43	GO:0006072: glycerol-3-phosphate metabolic process	1.21E-03
44	GO:0030100: regulation of endocytosis	1.21E-03
45	GO:0009269: response to desiccation	1.23E-03
46	GO:0009651: response to salt stress	1.32E-03
47	GO:0042538: hyperosmotic salinity response	1.39E-03
48	GO:0009873: ethylene-activated signaling pathway	1.47E-03
49	GO:0001944: vasculature development	1.47E-03
50	GO:0010222: stem vascular tissue pattern formation	1.62E-03
51	GO:0046345: abscisic acid catabolic process	1.62E-03
52	GO:0022622: root system development	1.62E-03
53	GO:0006552: leucine catabolic process	1.62E-03
54	GO:0071585: detoxification of cadmium ion	1.62E-03
55	GO:0015867: ATP transport	1.62E-03
56	GO:0070417: cellular response to cold	1.72E-03
57	GO:0006970: response to osmotic stress	1.87E-03
58	GO:0048868: pollen tube development	2.00E-03
59	GO:0006873: cellular ion homeostasis	2.07E-03
60	GO:0006461: protein complex assembly	2.07E-03
61	GO:0006665: sphingolipid metabolic process	2.07E-03
62	GO:0009247: glycolipid biosynthetic process	2.07E-03
63	GO:0071423: malate transmembrane transport	2.07E-03
64	GO:0009624: response to nematode	2.38E-03
65	GO:1900425: negative regulation of defense response to bacterium	2.55E-03
66	GO:0006574: valine catabolic process	2.55E-03
67	GO:0015866: ADP transport	2.55E-03
68	GO:0045962: positive regulation of development, heterochronic	2.55E-03
69	GO:0009611: response to wounding	2.68E-03
70	GO:0019760: glucosinolate metabolic process	2.99E-03
71	GO:0009082: branched-chain amino acid biosynthetic process	3.06E-03
72	GO:0098655: cation transmembrane transport	3.06E-03
73	GO:0010019: chloroplast-nucleus signaling pathway	3.06E-03
74	GO:0010555: response to mannitol	3.06E-03
75	GO:0071470: cellular response to osmotic stress	3.06E-03
76	GO:0010286: heat acclimation	3.17E-03
77	GO:1902074: response to salt	3.61E-03
78	GO:0032880: regulation of protein localization	3.61E-03
79	GO:0009610: response to symbiotic fungus	3.61E-03
80	GO:0030497: fatty acid elongation	3.61E-03
81	GO:0008272: sulfate transport	3.61E-03
82	GO:0050829: defense response to Gram-negative bacterium	3.61E-03
83	GO:0006974: cellular response to DNA damage stimulus	3.97E-03
84	GO:0019375: galactolipid biosynthetic process	4.19E-03
85	GO:0050821: protein stabilization	4.19E-03
86	GO:0007155: cell adhesion	4.19E-03
87	GO:0008610: lipid biosynthetic process	4.19E-03
88	GO:0035265: organ growth	4.19E-03
89	GO:0051276: chromosome organization	4.19E-03
90	GO:0007623: circadian rhythm	4.76E-03
91	GO:0010345: suberin biosynthetic process	5.43E-03
92	GO:0098656: anion transmembrane transport	5.43E-03
93	GO:0005975: carbohydrate metabolic process	5.92E-03
94	GO:0042761: very long-chain fatty acid biosynthetic process	6.09E-03
95	GO:2000280: regulation of root development	6.09E-03
96	GO:0006839: mitochondrial transport	6.69E-03
97	GO:0009641: shade avoidance	6.78E-03
98	GO:0006631: fatty acid metabolic process	6.98E-03
99	GO:0018119: peptidyl-cysteine S-nitrosylation	7.50E-03
100	GO:0009744: response to sucrose	7.57E-03
101	GO:0051707: response to other organism	7.57E-03
102	GO:0009644: response to high light intensity	8.19E-03
103	GO:0016024: CDP-diacylglycerol biosynthetic process	8.25E-03
104	GO:0045037: protein import into chloroplast stroma	8.25E-03
105	GO:0018107: peptidyl-threonine phosphorylation	9.02E-03
106	GO:0009725: response to hormone	9.02E-03
107	GO:0010588: cotyledon vascular tissue pattern formation	9.02E-03
108	GO:2000012: regulation of auxin polar transport	9.02E-03
109	GO:0010143: cutin biosynthetic process	9.82E-03
110	GO:0009416: response to light stimulus	1.00E-02
111	GO:0070588: calcium ion transmembrane transport	1.06E-02
112	GO:0009225: nucleotide-sugar metabolic process	1.06E-02
113	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.14E-02
114	GO:0010200: response to chitin	1.14E-02
115	GO:0009833: plant-type primary cell wall biogenesis	1.15E-02
116	GO:0043086: negative regulation of catalytic activity	1.21E-02
117	GO:0030150: protein import into mitochondrial matrix	1.24E-02
118	GO:0048367: shoot system development	1.25E-02
119	GO:0007017: microtubule-based process	1.32E-02
120	GO:0031408: oxylipin biosynthetic process	1.42E-02
121	GO:0016998: cell wall macromolecule catabolic process	1.42E-02
122	GO:0051260: protein homooligomerization	1.42E-02
123	GO:0010017: red or far-red light signaling pathway	1.51E-02
124	GO:0006869: lipid transport	1.54E-02
125	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.61E-02
126	GO:0071215: cellular response to abscisic acid stimulus	1.61E-02
127	GO:0008284: positive regulation of cell proliferation	1.80E-02
128	GO:0042631: cellular response to water deprivation	1.91E-02
129	GO:0000226: microtubule cytoskeleton organization	1.91E-02
130	GO:0010268: brassinosteroid homeostasis	2.01E-02
131	GO:0009958: positive gravitropism	2.01E-02
132	GO:0009749: response to glucose	2.23E-02
133	GO:0019252: starch biosynthetic process	2.23E-02
134	GO:0016132: brassinosteroid biosynthetic process	2.34E-02
135	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.34E-02
136	GO:0010583: response to cyclopentenone	2.45E-02
137	GO:0045490: pectin catabolic process	2.53E-02
138	GO:0009639: response to red or far red light	2.68E-02
139	GO:0009828: plant-type cell wall loosening	2.68E-02
140	GO:0006310: DNA recombination	2.68E-02
141	GO:0016125: sterol metabolic process	2.68E-02
142	GO:0071555: cell wall organization	2.87E-02
143	GO:0006470: protein dephosphorylation	2.89E-02
144	GO:0007166: cell surface receptor signaling pathway	2.89E-02
145	GO:0010027: thylakoid membrane organization	3.04E-02
146	GO:0009911: positive regulation of flower development	3.04E-02
147	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.16E-02
148	GO:0030154: cell differentiation	3.26E-02
149	GO:0010411: xyloglucan metabolic process	3.41E-02
150	GO:0016049: cell growth	3.54E-02
151	GO:0007568: aging	4.07E-02
152	GO:0048527: lateral root development	4.07E-02
153	GO:0000724: double-strand break repair via homologous recombination	4.20E-02
154	GO:0016051: carbohydrate biosynthetic process	4.34E-02
155	GO:0009637: response to blue light	4.34E-02
156	GO:0034599: cellular response to oxidative stress	4.48E-02
157	GO:0055085: transmembrane transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010303: limit dextrinase activity	0.00E+00
2	GO:0005534: galactose binding	0.00E+00
3	GO:0051060: pullulanase activity	0.00E+00
4	GO:0009922: fatty acid elongase activity	5.17E-07
5	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.46E-06
6	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.46E-06
7	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.46E-06
8	GO:0046423: allene-oxide cyclase activity	9.47E-06
9	GO:0070330: aromatase activity	9.47E-06
10	GO:0018685: alkane 1-monooxygenase activity	6.26E-05
11	GO:0004556: alpha-amylase activity	9.17E-05
12	GO:0015245: fatty acid transporter activity	2.36E-04
13	GO:1901677: phosphate transmembrane transporter activity	5.24E-04
14	GO:0016629: 12-oxophytodienoate reductase activity	5.24E-04
15	GO:0017040: ceramidase activity	5.24E-04
16	GO:0046509: 1,2-diacylglycerol 3-beta-galactosyltransferase activity	5.24E-04
17	GO:0015117: thiosulfate transmembrane transporter activity	5.24E-04
18	GO:0008083: growth factor activity	7.46E-04
19	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.52E-04
20	GO:0005457: GDP-fucose transmembrane transporter activity	8.52E-04
21	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.52E-04
22	GO:0015141: succinate transmembrane transporter activity	8.52E-04
23	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	8.52E-04
24	GO:0035250: UDP-galactosyltransferase activity	1.21E-03
25	GO:0003883: CTP synthase activity	1.21E-03
26	GO:0005460: UDP-glucose transmembrane transporter activity	1.21E-03
27	GO:0052656: L-isoleucine transaminase activity	1.21E-03
28	GO:0052654: L-leucine transaminase activity	1.21E-03
29	GO:0052655: L-valine transaminase activity	1.21E-03
30	GO:0015131: oxaloacetate transmembrane transporter activity	1.21E-03
31	GO:0050378: UDP-glucuronate 4-epimerase activity	1.62E-03
32	GO:0004084: branched-chain-amino-acid transaminase activity	1.62E-03
33	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.07E-03
34	GO:0005459: UDP-galactose transmembrane transporter activity	2.07E-03
35	GO:0080122: AMP transmembrane transporter activity	2.07E-03
36	GO:0016746: transferase activity, transferring acyl groups	2.47E-03
37	GO:0016688: L-ascorbate peroxidase activity	2.55E-03
38	GO:0009378: four-way junction helicase activity	2.55E-03
39	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.55E-03
40	GO:0043140: ATP-dependent 3'-5' DNA helicase activity	2.55E-03
41	GO:0004130: cytochrome-c peroxidase activity	2.55E-03
42	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.55E-03
43	GO:0044212: transcription regulatory region DNA binding	2.60E-03
44	GO:0043138: 3'-5' DNA helicase activity	3.06E-03
45	GO:0005347: ATP transmembrane transporter activity	3.06E-03
46	GO:0015217: ADP transmembrane transporter activity	3.06E-03
47	GO:0004620: phospholipase activity	3.61E-03
48	GO:0016621: cinnamoyl-CoA reductase activity	3.61E-03
49	GO:0015140: malate transmembrane transporter activity	3.61E-03
50	GO:0015288: porin activity	4.19E-03
51	GO:0046910: pectinesterase inhibitor activity	4.36E-03
52	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.41E-03
53	GO:0008308: voltage-gated anion channel activity	4.79E-03
54	GO:0015020: glucuronosyltransferase activity	6.78E-03
55	GO:0004864: protein phosphatase inhibitor activity	6.78E-03
56	GO:0008289: lipid binding	6.92E-03
57	GO:0015116: sulfate transmembrane transporter activity	8.25E-03
58	GO:0015114: phosphate ion transmembrane transporter activity	9.02E-03
59	GO:0005388: calcium-transporting ATPase activity	9.02E-03
60	GO:0015266: protein channel activity	9.02E-03
61	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	9.82E-03
62	GO:0043565: sequence-specific DNA binding	1.00E-02
63	GO:0043130: ubiquitin binding	1.24E-02
64	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.52E-02
65	GO:0030570: pectate lyase activity	1.61E-02
66	GO:0018024: histone-lysine N-methyltransferase activity	1.80E-02
67	GO:0010181: FMN binding	2.12E-02
68	GO:0004872: receptor activity	2.23E-02
69	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.34E-02
70	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.36E-02
71	GO:0015297: antiporter activity	2.41E-02
72	GO:0004197: cysteine-type endopeptidase activity	2.45E-02
73	GO:0016791: phosphatase activity	2.68E-02
74	GO:0005200: structural constituent of cytoskeleton	2.80E-02
75	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.21E-02
76	GO:0008375: acetylglucosaminyltransferase activity	3.29E-02
77	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.41E-02
78	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.67E-02
79	GO:0005096: GTPase activator activity	3.80E-02
80	GO:0003993: acid phosphatase activity	4.48E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0046658: anchored component of plasma membrane	2.95E-05
3	GO:0031225: anchored component of membrane	4.14E-04
4	GO:0031357: integral component of chloroplast inner membrane	5.24E-04
5	GO:0016020: membrane	7.32E-04
6	GO:0009897: external side of plasma membrane	8.52E-04
7	GO:0009941: chloroplast envelope	1.16E-03
8	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.21E-03
9	GO:0009527: plastid outer membrane	1.62E-03
10	GO:0005886: plasma membrane	2.46E-03
11	GO:0005798: Golgi-associated vesicle	2.55E-03
12	GO:0005694: chromosome	2.63E-03
13	GO:0009505: plant-type cell wall	4.06E-03
14	GO:0031305: integral component of mitochondrial inner membrane	4.19E-03
15	GO:0046930: pore complex	4.79E-03
16	GO:0045298: tubulin complex	5.43E-03
17	GO:0005769: early endosome	1.15E-02
18	GO:0005618: cell wall	1.47E-02
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.70E-02
20	GO:0016021: integral component of membrane	2.11E-02
21	GO:0032580: Golgi cisterna membrane	2.68E-02
22	GO:0010319: stromule	2.80E-02
23	GO:0005615: extracellular space	2.83E-02
24	GO:0005576: extracellular region	3.16E-02
25	GO:0009535: chloroplast thylakoid membrane	3.49E-02
26	GO:0009707: chloroplast outer membrane	3.67E-02
27	GO:0009506: plasmodesma	3.96E-02
28	GO:0009534: chloroplast thylakoid	4.62E-02
29	GO:0005783: endoplasmic reticulum	4.63E-02