Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G29390

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0090627: plant epidermal cell differentiation0.00E+00
2GO:1905177: tracheary element differentiation0.00E+00
3GO:0009631: cold acclimation1.32E-04
4GO:0006650: glycerophospholipid metabolic process2.28E-04
5GO:1901959: positive regulation of cutin biosynthetic process2.28E-04
6GO:0010025: wax biosynthetic process2.77E-04
7GO:1904278: positive regulation of wax biosynthetic process3.80E-04
8GO:0010623: programmed cell death involved in cell development3.80E-04
9GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.47E-04
10GO:0042631: cellular response to water deprivation5.67E-04
11GO:0046345: abscisic acid catabolic process7.26E-04
12GO:0015689: molybdate ion transport7.26E-04
13GO:0022622: root system development7.26E-04
14GO:0045723: positive regulation of fatty acid biosynthetic process7.26E-04
15GO:0006552: leucine catabolic process7.26E-04
16GO:0010508: positive regulation of autophagy7.26E-04
17GO:0071585: detoxification of cadmium ion7.26E-04
18GO:0009828: plant-type cell wall loosening8.97E-04
19GO:0006656: phosphatidylcholine biosynthetic process9.17E-04
20GO:0000470: maturation of LSU-rRNA1.12E-03
21GO:0009913: epidermal cell differentiation1.12E-03
22GO:0047484: regulation of response to osmotic stress1.12E-03
23GO:1900425: negative regulation of defense response to bacterium1.12E-03
24GO:0006574: valine catabolic process1.12E-03
25GO:0045926: negative regulation of growth1.34E-03
26GO:0009082: branched-chain amino acid biosynthetic process1.34E-03
27GO:0032880: regulation of protein localization1.57E-03
28GO:0009409: response to cold1.67E-03
29GO:0008610: lipid biosynthetic process1.81E-03
30GO:0035265: organ growth1.81E-03
31GO:0009819: drought recovery1.81E-03
32GO:0009704: de-etiolation1.81E-03
33GO:0042761: very long-chain fatty acid biosynthetic process2.61E-03
34GO:0009664: plant-type cell wall organization2.76E-03
35GO:0006949: syncytium formation2.90E-03
36GO:0009641: shade avoidance2.90E-03
37GO:0043086: negative regulation of catalytic activity3.50E-03
38GO:0045037: protein import into chloroplast stroma3.50E-03
39GO:0009737: response to abscisic acid3.71E-03
40GO:2000012: regulation of auxin polar transport3.82E-03
41GO:0009887: animal organ morphogenesis4.15E-03
42GO:0009873: ethylene-activated signaling pathway5.08E-03
43GO:0030150: protein import into mitochondrial matrix5.19E-03
44GO:0006289: nucleotide-excision repair5.19E-03
45GO:0007017: microtubule-based process5.55E-03
46GO:0015031: protein transport6.30E-03
47GO:0001944: vasculature development6.70E-03
48GO:0010089: xylem development7.10E-03
49GO:0006284: base-excision repair7.10E-03
50GO:0009789: positive regulation of abscisic acid-activated signaling pathway7.51E-03
51GO:0070417: cellular response to cold7.51E-03
52GO:0008284: positive regulation of cell proliferation7.51E-03
53GO:0000226: microtubule cytoskeleton organization7.93E-03
54GO:0010268: brassinosteroid homeostasis8.35E-03
55GO:0009958: positive gravitropism8.35E-03
56GO:0048825: cotyledon development9.23E-03
57GO:0009749: response to glucose9.23E-03
58GO:0008654: phospholipid biosynthetic process9.23E-03
59GO:0000302: response to reactive oxygen species9.68E-03
60GO:0016132: brassinosteroid biosynthetic process9.68E-03
61GO:0010583: response to cyclopentenone1.01E-02
62GO:1901657: glycosyl compound metabolic process1.06E-02
63GO:0009826: unidimensional cell growth1.08E-02
64GO:0016125: sterol metabolic process1.11E-02
65GO:0019760: glucosinolate metabolic process1.11E-02
66GO:0009639: response to red or far red light1.11E-02
67GO:0006310: DNA recombination1.11E-02
68GO:0006974: cellular response to DNA damage stimulus1.36E-02
69GO:0048527: lateral root development1.68E-02
70GO:0007568: aging1.68E-02
71GO:0016051: carbohydrate biosynthetic process1.79E-02
72GO:0006979: response to oxidative stress1.88E-02
73GO:0006631: fatty acid metabolic process2.02E-02
74GO:0006281: DNA repair2.06E-02
75GO:0030154: cell differentiation2.07E-02
76GO:0008283: cell proliferation2.14E-02
77GO:0010114: response to red light2.14E-02
78GO:0009744: response to sucrose2.14E-02
79GO:0000209: protein polyubiquitination2.20E-02
80GO:0009644: response to high light intensity2.27E-02
81GO:0008152: metabolic process2.27E-02
82GO:0042538: hyperosmotic salinity response2.52E-02
83GO:0009585: red, far-red light phototransduction2.65E-02
84GO:0048367: shoot system development3.05E-02
85GO:0009742: brassinosteroid mediated signaling pathway3.55E-02
86GO:0009058: biosynthetic process4.15E-02
87GO:0009845: seed germination4.23E-02
88GO:0007275: multicellular organism development4.32E-02
RankGO TermAdjusted P value
1GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
2GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
3GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity9.69E-05
4GO:0004105: choline-phosphate cytidylyltransferase activity9.69E-05
5GO:0005534: galactose binding9.69E-05
6GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity9.69E-05
7GO:0008083: growth factor activity2.19E-04
8GO:0010295: (+)-abscisic acid 8'-hydroxylase activity3.80E-04
9GO:0017108: 5'-flap endonuclease activity3.80E-04
10GO:0052655: L-valine transaminase activity5.46E-04
11GO:0003883: CTP synthase activity5.46E-04
12GO:0052656: L-isoleucine transaminase activity5.46E-04
13GO:0052654: L-leucine transaminase activity5.46E-04
14GO:0019104: DNA N-glycosylase activity7.26E-04
15GO:0004084: branched-chain-amino-acid transaminase activity7.26E-04
16GO:0015098: molybdate ion transmembrane transporter activity7.26E-04
17GO:0046910: pectinesterase inhibitor activity9.14E-04
18GO:0008374: O-acyltransferase activity9.17E-04
19GO:0004620: phospholipase activity1.57E-03
20GO:0015288: porin activity1.81E-03
21GO:0016209: antioxidant activity1.81E-03
22GO:0015020: glucuronosyltransferase activity2.90E-03
23GO:0000976: transcription regulatory region sequence-specific DNA binding3.50E-03
24GO:0003924: GTPase activity3.68E-03
25GO:0015266: protein channel activity3.82E-03
26GO:0042973: glucan endo-1,3-beta-D-glucosidase activity4.15E-03
27GO:0043130: ubiquitin binding5.19E-03
28GO:0030570: pectate lyase activity6.70E-03
29GO:0004518: nuclease activity1.01E-02
30GO:0003684: damaged DNA binding1.11E-02
31GO:0005200: structural constituent of cytoskeleton1.16E-02
32GO:0008375: acetylglucosaminyltransferase activity1.36E-02
33GO:0102483: scopolin beta-glucosidase activity1.41E-02
34GO:0005525: GTP binding1.43E-02
35GO:0008757: S-adenosylmethionine-dependent methyltransferase activity1.46E-02
36GO:0061630: ubiquitin protein ligase activity1.47E-02
37GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.51E-02
38GO:0003993: acid phosphatase activity1.85E-02
39GO:0008422: beta-glucosidase activity1.91E-02
40GO:0005198: structural molecule activity2.33E-02
41GO:0003690: double-stranded DNA binding2.72E-02
42GO:0015171: amino acid transmembrane transporter activity2.85E-02
43GO:0031625: ubiquitin protein ligase binding2.85E-02
44GO:0008289: lipid binding2.87E-02
45GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups3.05E-02
46GO:0016874: ligase activity3.26E-02
47GO:0016746: transferase activity, transferring acyl groups3.48E-02
48GO:0019843: rRNA binding4.00E-02
49GO:0016829: lyase activity4.23E-02
50GO:0015144: carbohydrate transmembrane transporter activity4.54E-02
51GO:0004675: transmembrane receptor protein serine/threonine kinase activity4.78E-02
52GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.80E-02
53GO:0005351: sugar:proton symporter activity4.94E-02
54GO:0043565: sequence-specific DNA binding4.97E-02
RankGO TermAdjusted P value
1GO:0031224: intrinsic component of membrane0.00E+00
2GO:0033557: Slx1-Slx4 complex0.00E+00
3GO:0034426: etioplast membrane0.00E+00
4GO:0031357: integral component of chloroplast inner membrane2.28E-04
5GO:0009941: chloroplast envelope3.98E-04
6GO:0009527: plastid outer membrane7.26E-04
7GO:0031305: integral component of mitochondrial inner membrane1.81E-03
8GO:0046930: pore complex2.07E-03
9GO:0045298: tubulin complex2.33E-03
10GO:0005744: mitochondrial inner membrane presequence translocase complex7.10E-03
11GO:0009570: chloroplast stroma8.78E-03
12GO:0046658: anchored component of plasma membrane9.59E-03
13GO:0005618: cell wall1.09E-02
14GO:0009707: chloroplast outer membrane1.51E-02
15GO:0005622: intracellular1.58E-02
16GO:0016607: nuclear speck3.05E-02
17GO:0010287: plastoglobule3.85E-02
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Gene type



Gene DE type