GO Enrichment Analysis of Co-expressed Genes with
AT1G29250
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090239: regulation of histone H4 acetylation | 0.00E+00 |
| 2 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 3 | GO:0000740: nuclear membrane fusion | 0.00E+00 |
| 4 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 5 | GO:0045041: protein import into mitochondrial intermembrane space | 0.00E+00 |
| 6 | GO:0000494: box C/D snoRNA 3'-end processing | 0.00E+00 |
| 7 | GO:0034050: host programmed cell death induced by symbiont | 0.00E+00 |
| 8 | GO:1904874: positive regulation of telomerase RNA localization to Cajal body | 0.00E+00 |
| 9 | GO:0071731: response to nitric oxide | 0.00E+00 |
| 10 | GO:1990258: histone glutamine methylation | 0.00E+00 |
| 11 | GO:0006412: translation | 1.18E-151 |
| 12 | GO:0042254: ribosome biogenesis | 2.37E-61 |
| 13 | GO:0000027: ribosomal large subunit assembly | 1.53E-13 |
| 14 | GO:0006626: protein targeting to mitochondrion | 1.16E-12 |
| 15 | GO:0006364: rRNA processing | 9.62E-10 |
| 16 | GO:0006458: 'de novo' protein folding | 2.55E-07 |
| 17 | GO:0000028: ribosomal small subunit assembly | 8.87E-07 |
| 18 | GO:0007005: mitochondrion organization | 2.94E-06 |
| 19 | GO:0000387: spliceosomal snRNP assembly | 3.51E-06 |
| 20 | GO:0048569: post-embryonic animal organ development | 1.57E-05 |
| 21 | GO:0009967: positive regulation of signal transduction | 1.57E-05 |
| 22 | GO:0009955: adaxial/abaxial pattern specification | 1.91E-05 |
| 23 | GO:0042026: protein refolding | 1.91E-05 |
| 24 | GO:0061077: chaperone-mediated protein folding | 5.06E-05 |
| 25 | GO:0045039: protein import into mitochondrial inner membrane | 5.19E-05 |
| 26 | GO:1902626: assembly of large subunit precursor of preribosome | 5.19E-05 |
| 27 | GO:0002181: cytoplasmic translation | 5.19E-05 |
| 28 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.10E-04 |
| 29 | GO:0008033: tRNA processing | 1.13E-04 |
| 30 | GO:0010197: polar nucleus fusion | 1.30E-04 |
| 31 | GO:0010162: seed dormancy process | 1.36E-04 |
| 32 | GO:0000398: mRNA splicing, via spliceosome | 1.69E-04 |
| 33 | GO:0042274: ribosomal small subunit biogenesis | 1.87E-04 |
| 34 | GO:0009735: response to cytokinin | 2.68E-04 |
| 35 | GO:0031167: rRNA methylation | 2.84E-04 |
| 36 | GO:0045040: protein import into mitochondrial outer membrane | 3.97E-04 |
| 37 | GO:0030150: protein import into mitochondrial matrix | 4.56E-04 |
| 38 | GO:0000245: spliceosomal complex assembly | 5.28E-04 |
| 39 | GO:0016444: somatic cell DNA recombination | 5.28E-04 |
| 40 | GO:0015801: aromatic amino acid transport | 6.01E-04 |
| 41 | GO:0035266: meristem growth | 6.01E-04 |
| 42 | GO:0030490: maturation of SSU-rRNA | 6.01E-04 |
| 43 | GO:0006434: seryl-tRNA aminoacylation | 6.01E-04 |
| 44 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.01E-04 |
| 45 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 6.01E-04 |
| 46 | GO:0006169: adenosine salvage | 6.01E-04 |
| 47 | GO:0006407: rRNA export from nucleus | 6.01E-04 |
| 48 | GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process | 6.01E-04 |
| 49 | GO:0031120: snRNA pseudouridine synthesis | 6.01E-04 |
| 50 | GO:0000469: cleavage involved in rRNA processing | 6.01E-04 |
| 51 | GO:0031118: rRNA pseudouridine synthesis | 6.01E-04 |
| 52 | GO:0001510: RNA methylation | 1.02E-03 |
| 53 | GO:0008283: cell proliferation | 1.15E-03 |
| 54 | GO:2000072: regulation of defense response to fungus, incompatible interaction | 1.29E-03 |
| 55 | GO:0045901: positive regulation of translational elongation | 1.29E-03 |
| 56 | GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | 1.29E-03 |
| 57 | GO:0043981: histone H4-K5 acetylation | 1.29E-03 |
| 58 | GO:0006452: translational frameshifting | 1.29E-03 |
| 59 | GO:0010198: synergid death | 1.29E-03 |
| 60 | GO:0015786: UDP-glucose transport | 1.29E-03 |
| 61 | GO:0045859: regulation of protein kinase activity | 1.29E-03 |
| 62 | GO:0045905: positive regulation of translational termination | 1.29E-03 |
| 63 | GO:0080156: mitochondrial mRNA modification | 1.44E-03 |
| 64 | GO:0006413: translational initiation | 1.55E-03 |
| 65 | GO:0015783: GDP-fucose transport | 2.13E-03 |
| 66 | GO:0010476: gibberellin mediated signaling pathway | 2.13E-03 |
| 67 | GO:0042256: mature ribosome assembly | 2.13E-03 |
| 68 | GO:0006954: inflammatory response | 2.13E-03 |
| 69 | GO:0009150: purine ribonucleotide metabolic process | 2.13E-03 |
| 70 | GO:0046686: response to cadmium ion | 2.74E-03 |
| 71 | GO:0006414: translational elongation | 2.90E-03 |
| 72 | GO:0009553: embryo sac development | 2.97E-03 |
| 73 | GO:0006986: response to unfolded protein | 3.09E-03 |
| 74 | GO:0006383: transcription from RNA polymerase III promoter | 3.09E-03 |
| 75 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 3.09E-03 |
| 76 | GO:0007004: telomere maintenance via telomerase | 3.09E-03 |
| 77 | GO:0070301: cellular response to hydrogen peroxide | 3.09E-03 |
| 78 | GO:0006241: CTP biosynthetic process | 3.09E-03 |
| 79 | GO:0072334: UDP-galactose transmembrane transport | 3.09E-03 |
| 80 | GO:0006165: nucleoside diphosphate phosphorylation | 3.09E-03 |
| 81 | GO:0006228: UTP biosynthetic process | 3.09E-03 |
| 82 | GO:0006164: purine nucleotide biosynthetic process | 3.09E-03 |
| 83 | GO:0009855: determination of bilateral symmetry | 3.09E-03 |
| 84 | GO:0051131: chaperone-mediated protein complex assembly | 3.09E-03 |
| 85 | GO:0009558: embryo sac cellularization | 3.09E-03 |
| 86 | GO:0009944: polarity specification of adaxial/abaxial axis | 3.99E-03 |
| 87 | GO:0006183: GTP biosynthetic process | 4.17E-03 |
| 88 | GO:0042273: ribosomal large subunit biogenesis | 4.17E-03 |
| 89 | GO:0051205: protein insertion into membrane | 4.17E-03 |
| 90 | GO:0006334: nucleosome assembly | 4.85E-03 |
| 91 | GO:0097428: protein maturation by iron-sulfur cluster transfer | 5.35E-03 |
| 92 | GO:0006461: protein complex assembly | 5.35E-03 |
| 93 | GO:0044209: AMP salvage | 5.35E-03 |
| 94 | GO:0040007: growth | 5.81E-03 |
| 95 | GO:0071215: cellular response to abscisic acid stimulus | 5.81E-03 |
| 96 | GO:0009294: DNA mediated transformation | 5.81E-03 |
| 97 | GO:0016070: RNA metabolic process | 6.64E-03 |
| 98 | GO:0000470: maturation of LSU-rRNA | 6.64E-03 |
| 99 | GO:0016554: cytidine to uridine editing | 6.64E-03 |
| 100 | GO:0000741: karyogamy | 6.64E-03 |
| 101 | GO:0000413: protein peptidyl-prolyl isomerization | 7.42E-03 |
| 102 | GO:0080186: developmental vegetative growth | 9.51E-03 |
| 103 | GO:0001522: pseudouridine synthesis | 1.11E-02 |
| 104 | GO:0043562: cellular response to nitrogen levels | 1.27E-02 |
| 105 | GO:0001558: regulation of cell growth | 1.27E-02 |
| 106 | GO:0006189: 'de novo' IMP biosynthetic process | 1.45E-02 |
| 107 | GO:0007338: single fertilization | 1.45E-02 |
| 108 | GO:0048507: meristem development | 1.45E-02 |
| 109 | GO:0010449: root meristem growth | 1.63E-02 |
| 110 | GO:0006457: protein folding | 1.69E-02 |
| 111 | GO:0030422: production of siRNA involved in RNA interference | 1.82E-02 |
| 112 | GO:0006259: DNA metabolic process | 1.82E-02 |
| 113 | GO:0009793: embryo development ending in seed dormancy | 1.83E-02 |
| 114 | GO:0010311: lateral root formation | 1.98E-02 |
| 115 | GO:0010015: root morphogenesis | 2.02E-02 |
| 116 | GO:0006913: nucleocytoplasmic transport | 2.02E-02 |
| 117 | GO:0006879: cellular iron ion homeostasis | 2.02E-02 |
| 118 | GO:0006790: sulfur compound metabolic process | 2.22E-02 |
| 119 | GO:0012501: programmed cell death | 2.22E-02 |
| 120 | GO:0006820: anion transport | 2.22E-02 |
| 121 | GO:0000724: double-strand break repair via homologous recombination | 2.29E-02 |
| 122 | GO:2000028: regulation of photoperiodism, flowering | 2.44E-02 |
| 123 | GO:2000012: regulation of auxin polar transport | 2.44E-02 |
| 124 | GO:0010102: lateral root morphogenesis | 2.44E-02 |
| 125 | GO:0048467: gynoecium development | 2.66E-02 |
| 126 | GO:0006446: regulation of translational initiation | 2.66E-02 |
| 127 | GO:0009644: response to high light intensity | 3.34E-02 |
| 128 | GO:0009965: leaf morphogenesis | 3.47E-02 |
| 129 | GO:0010073: meristem maintenance | 3.60E-02 |
| 130 | GO:0051302: regulation of cell division | 3.60E-02 |
| 131 | GO:0003333: amino acid transmembrane transport | 3.85E-02 |
| 132 | GO:0016226: iron-sulfur cluster assembly | 4.10E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990259: histone-glutamine methyltransferase activity | 0.00E+00 |
| 2 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 3 | GO:0034513: box H/ACA snoRNA binding | 0.00E+00 |
| 4 | GO:0004641: phosphoribosylformylglycinamidine cyclo-ligase activity | 0.00E+00 |
| 5 | GO:0003735: structural constituent of ribosome | 3.09E-186 |
| 6 | GO:0003729: mRNA binding | 1.33E-31 |
| 7 | GO:0019843: rRNA binding | 8.51E-18 |
| 8 | GO:0003723: RNA binding | 8.99E-14 |
| 9 | GO:0030515: snoRNA binding | 4.65E-09 |
| 10 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 1.24E-08 |
| 11 | GO:0044183: protein binding involved in protein folding | 1.59E-07 |
| 12 | GO:0003746: translation elongation factor activity | 6.79E-07 |
| 13 | GO:0051082: unfolded protein binding | 1.49E-05 |
| 14 | GO:0005078: MAP-kinase scaffold activity | 1.57E-05 |
| 15 | GO:0008649: rRNA methyltransferase activity | 5.19E-05 |
| 16 | GO:0001055: RNA polymerase II activity | 1.07E-04 |
| 17 | GO:0008097: 5S rRNA binding | 1.10E-04 |
| 18 | GO:0001054: RNA polymerase I activity | 1.69E-04 |
| 19 | GO:0001056: RNA polymerase III activity | 2.06E-04 |
| 20 | GO:0000166: nucleotide binding | 3.45E-04 |
| 21 | GO:0004407: histone deacetylase activity | 4.56E-04 |
| 22 | GO:0035614: snRNA stem-loop binding | 6.01E-04 |
| 23 | GO:0042134: rRNA primary transcript binding | 6.01E-04 |
| 24 | GO:0004828: serine-tRNA ligase activity | 6.01E-04 |
| 25 | GO:0004679: AMP-activated protein kinase activity | 6.01E-04 |
| 26 | GO:0048037: cofactor binding | 6.01E-04 |
| 27 | GO:0004001: adenosine kinase activity | 6.01E-04 |
| 28 | GO:0005080: protein kinase C binding | 6.01E-04 |
| 29 | GO:0015288: porin activity | 8.40E-04 |
| 30 | GO:0043022: ribosome binding | 8.40E-04 |
| 31 | GO:0005507: copper ion binding | 8.92E-04 |
| 32 | GO:0030619: U1 snRNA binding | 1.29E-03 |
| 33 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 1.29E-03 |
| 34 | GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity | 1.29E-03 |
| 35 | GO:0036455: iron-sulfur transferase activity | 1.29E-03 |
| 36 | GO:0015173: aromatic amino acid transmembrane transporter activity | 1.29E-03 |
| 37 | GO:0070034: telomerase RNA binding | 1.29E-03 |
| 38 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 1.29E-03 |
| 39 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 1.29E-03 |
| 40 | GO:0035241: protein-arginine omega-N monomethyltransferase activity | 1.29E-03 |
| 41 | GO:0043141: ATP-dependent 5'-3' DNA helicase activity | 1.29E-03 |
| 42 | GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity | 1.29E-03 |
| 43 | GO:0005457: GDP-fucose transmembrane transporter activity | 2.13E-03 |
| 44 | GO:0008469: histone-arginine N-methyltransferase activity | 2.13E-03 |
| 45 | GO:0015462: ATPase-coupled protein transmembrane transporter activity | 2.13E-03 |
| 46 | GO:0032947: protein complex scaffold | 2.13E-03 |
| 47 | GO:0015266: protein channel activity | 2.54E-03 |
| 48 | GO:0047627: adenylylsulfatase activity | 3.09E-03 |
| 49 | GO:0005460: UDP-glucose transmembrane transporter activity | 3.09E-03 |
| 50 | GO:0004550: nucleoside diphosphate kinase activity | 3.09E-03 |
| 51 | GO:0050897: cobalt ion binding | 3.92E-03 |
| 52 | GO:0051087: chaperone binding | 4.41E-03 |
| 53 | GO:0005459: UDP-galactose transmembrane transporter activity | 5.35E-03 |
| 54 | GO:0008198: ferrous iron binding | 5.35E-03 |
| 55 | GO:0005275: amine transmembrane transporter activity | 5.35E-03 |
| 56 | GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity | 6.64E-03 |
| 57 | GO:0019887: protein kinase regulator activity | 8.02E-03 |
| 58 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 8.95E-03 |
| 59 | GO:0003743: translation initiation factor activity | 9.12E-03 |
| 60 | GO:0008235: metalloexopeptidase activity | 9.51E-03 |
| 61 | GO:0008135: translation factor activity, RNA binding | 1.27E-02 |
| 62 | GO:0008308: voltage-gated anion channel activity | 1.27E-02 |
| 63 | GO:0003678: DNA helicase activity | 1.45E-02 |
| 64 | GO:0000049: tRNA binding | 2.22E-02 |
| 65 | GO:0031072: heat shock protein binding | 2.44E-02 |
| 66 | GO:0042393: histone binding | 2.73E-02 |
| 67 | GO:0051539: 4 iron, 4 sulfur cluster binding | 2.73E-02 |
| 68 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.60E-02 |
| 69 | GO:0005216: ion channel activity | 3.60E-02 |
| 70 | GO:0036459: thiol-dependent ubiquitinyl hydrolase activity | 3.85E-02 |
| 71 | GO:0004176: ATP-dependent peptidase activity | 3.85E-02 |
| 72 | GO:0008514: organic anion transmembrane transporter activity | 4.63E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043186: P granule | 0.00E+00 |
| 2 | GO:0090661: box H/ACA telomerase RNP complex | 0.00E+00 |
| 3 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 4 | GO:0072589: box H/ACA scaRNP complex | 0.00E+00 |
| 5 | GO:0005832: chaperonin-containing T-complex | 0.00E+00 |
| 6 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 7 | GO:0005840: ribosome | 2.25E-126 |
| 8 | GO:0022625: cytosolic large ribosomal subunit | 1.44E-110 |
| 9 | GO:0022626: cytosolic ribosome | 2.61E-109 |
| 10 | GO:0022627: cytosolic small ribosomal subunit | 1.96E-77 |
| 11 | GO:0005730: nucleolus | 1.57E-56 |
| 12 | GO:0005829: cytosol | 2.16E-38 |
| 13 | GO:0005737: cytoplasm | 3.35E-32 |
| 14 | GO:0009506: plasmodesma | 1.58E-23 |
| 15 | GO:0015934: large ribosomal subunit | 1.53E-17 |
| 16 | GO:0005774: vacuolar membrane | 2.07E-14 |
| 17 | GO:0015935: small ribosomal subunit | 4.53E-13 |
| 18 | GO:0016020: membrane | 1.33E-10 |
| 19 | GO:0005618: cell wall | 1.66E-10 |
| 20 | GO:0005773: vacuole | 6.53E-10 |
| 21 | GO:0015030: Cajal body | 6.19E-08 |
| 22 | GO:0032040: small-subunit processome | 2.42E-07 |
| 23 | GO:0019013: viral nucleocapsid | 3.56E-07 |
| 24 | GO:0005742: mitochondrial outer membrane translocase complex | 1.48E-06 |
| 25 | GO:0005732: small nucleolar ribonucleoprotein complex | 1.85E-06 |
| 26 | GO:0009507: chloroplast | 1.98E-06 |
| 27 | GO:0031428: box C/D snoRNP complex | 1.13E-05 |
| 28 | GO:0005758: mitochondrial intermembrane space | 3.41E-05 |
| 29 | GO:0034719: SMN-Sm protein complex | 5.19E-05 |
| 30 | GO:0005759: mitochondrial matrix | 5.86E-05 |
| 31 | GO:0005681: spliceosomal complex | 7.62E-05 |
| 32 | GO:0005736: DNA-directed RNA polymerase I complex | 8.18E-05 |
| 33 | GO:0005685: U1 snRNP | 8.18E-05 |
| 34 | GO:0005666: DNA-directed RNA polymerase III complex | 1.07E-04 |
| 35 | GO:0000418: DNA-directed RNA polymerase IV complex | 1.36E-04 |
| 36 | GO:0005682: U5 snRNP | 1.87E-04 |
| 37 | GO:0005665: DNA-directed RNA polymerase II, core complex | 2.06E-04 |
| 38 | GO:0005743: mitochondrial inner membrane | 2.19E-04 |
| 39 | GO:0005687: U4 snRNP | 2.84E-04 |
| 40 | GO:0097526: spliceosomal tri-snRNP complex | 2.84E-04 |
| 41 | GO:0005689: U12-type spliceosomal complex | 5.28E-04 |
| 42 | GO:0030686: 90S preribosome | 6.01E-04 |
| 43 | GO:0005739: mitochondrion | 8.09E-04 |
| 44 | GO:0005886: plasma membrane | 8.85E-04 |
| 45 | GO:0046930: pore complex | 1.02E-03 |
| 46 | GO:0071010: prespliceosome | 1.29E-03 |
| 47 | GO:0071011: precatalytic spliceosome | 1.44E-03 |
| 48 | GO:0005686: U2 snRNP | 1.69E-03 |
| 49 | GO:0005852: eukaryotic translation initiation factor 3 complex | 1.95E-03 |
| 50 | GO:0071013: catalytic step 2 spliceosome | 1.95E-03 |
| 51 | GO:0034715: pICln-Sm protein complex | 2.13E-03 |
| 52 | GO:0005853: eukaryotic translation elongation factor 1 complex | 2.13E-03 |
| 53 | GO:0005747: mitochondrial respiratory chain complex I | 2.46E-03 |
| 54 | GO:0005834: heterotrimeric G-protein complex | 2.58E-03 |
| 55 | GO:0031429: box H/ACA snoRNP complex | 3.09E-03 |
| 56 | GO:0000419: DNA-directed RNA polymerase V complex | 3.60E-03 |
| 57 | GO:0005741: mitochondrial outer membrane | 4.85E-03 |
| 58 | GO:0005744: mitochondrial inner membrane presequence translocase complex | 6.32E-03 |
| 59 | GO:0000243: commitment complex | 6.64E-03 |
| 60 | GO:0016272: prefoldin complex | 8.02E-03 |
| 61 | GO:0016363: nuclear matrix | 8.02E-03 |
| 62 | GO:0031359: integral component of chloroplast outer membrane | 9.51E-03 |
| 63 | GO:0071004: U2-type prespliceosome | 1.11E-02 |
| 64 | GO:0005688: U6 snRNP | 1.11E-02 |
| 65 | GO:0046540: U4/U6 x U5 tri-snRNP complex | 1.27E-02 |
| 66 | GO:0030529: intracellular ribonucleoprotein complex | 1.44E-02 |
| 67 | GO:0016604: nuclear body | 1.63E-02 |
| 68 | GO:0048471: perinuclear region of cytoplasm | 2.02E-02 |
| 69 | GO:0031307: integral component of mitochondrial outer membrane | 2.22E-02 |
| 70 | GO:0000786: nucleosome | 2.29E-02 |
| 71 | GO:0009536: plastid | 2.39E-02 |