co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G28120

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900088: regulation of inositol biosynthetic process	0.00E+00
2	GO:0046459: short-chain fatty acid metabolic process	0.00E+00
3	GO:1900091: regulation of raffinose biosynthetic process	0.00E+00
4	GO:0009661: chromoplast organization	0.00E+00
5	GO:0019878: lysine biosynthetic process via aminoadipic acid	0.00E+00
6	GO:0018215: protein phosphopantetheinylation	0.00E+00
7	GO:0006720: isoprenoid metabolic process	0.00E+00
8	GO:0032780: negative regulation of ATPase activity	0.00E+00
9	GO:0052889: 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene	0.00E+00
10	GO:0006120: mitochondrial electron transport, NADH to ubiquinone	8.03E-07
11	GO:0016120: carotene biosynthetic process	3.73E-05
12	GO:0019509: L-methionine salvage from methylthioadenosine	7.74E-05
13	GO:0006520: cellular amino acid metabolic process	9.76E-05
14	GO:0032956: regulation of actin cytoskeleton organization	1.73E-04
15	GO:0048438: floral whorl development	1.73E-04
16	GO:0006430: lysyl-tRNA aminoacylation	1.73E-04
17	GO:0080065: 4-alpha-methyl-delta7-sterol oxidation	1.73E-04
18	GO:0097502: mannosylation	1.73E-04
19	GO:0006567: threonine catabolic process	1.73E-04
20	GO:0016487: farnesol metabolic process	1.73E-04
21	GO:0009240: isopentenyl diphosphate biosynthetic process	1.73E-04
22	GO:0006285: base-excision repair, AP site formation	1.73E-04
23	GO:0055114: oxidation-reduction process	1.96E-04
24	GO:0006501: C-terminal protein lipidation	3.92E-04
25	GO:2000071: regulation of defense response by callose deposition	3.92E-04
26	GO:0010220: positive regulation of vernalization response	3.92E-04
27	GO:0048571: long-day photoperiodism	3.92E-04
28	GO:0019441: tryptophan catabolic process to kynurenine	3.92E-04
29	GO:0050992: dimethylallyl diphosphate biosynthetic process	3.92E-04
30	GO:1904143: positive regulation of carotenoid biosynthetic process	3.92E-04
31	GO:0080183: response to photooxidative stress	3.92E-04
32	GO:0043100: pyrimidine nucleobase salvage	3.92E-04
33	GO:0010343: singlet oxygen-mediated programmed cell death	3.92E-04
34	GO:2000030: regulation of response to red or far red light	3.92E-04
35	GO:0030010: establishment of cell polarity	3.92E-04
36	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	6.40E-04
37	GO:0044210: 'de novo' CTP biosynthetic process	6.40E-04
38	GO:1901562: response to paraquat	6.40E-04
39	GO:0043617: cellular response to sucrose starvation	6.40E-04
40	GO:0031929: TOR signaling	6.40E-04
41	GO:0006760: folic acid-containing compound metabolic process	6.40E-04
42	GO:0016226: iron-sulfur cluster assembly	8.83E-04
43	GO:0009963: positive regulation of flavonoid biosynthetic process	9.13E-04
44	GO:0006516: glycoprotein catabolic process	9.13E-04
45	GO:0009399: nitrogen fixation	9.13E-04
46	GO:0009647: skotomorphogenesis	9.13E-04
47	GO:0009649: entrainment of circadian clock	1.21E-03
48	GO:0042594: response to starvation	1.21E-03
49	GO:0000003: reproduction	1.21E-03
50	GO:0034613: cellular protein localization	1.21E-03
51	GO:0044804: nucleophagy	1.21E-03
52	GO:0006542: glutamine biosynthetic process	1.21E-03
53	GO:0006646: phosphatidylethanolamine biosynthetic process	1.21E-03
54	GO:0070534: protein K63-linked ubiquitination	1.21E-03
55	GO:0006545: glycine biosynthetic process	1.21E-03
56	GO:0008654: phospholipid biosynthetic process	1.50E-03
57	GO:0000422: mitophagy	1.54E-03
58	GO:0046283: anthocyanin-containing compound metabolic process	1.54E-03
59	GO:0000304: response to singlet oxygen	1.54E-03
60	GO:0007035: vacuolar acidification	1.89E-03
61	GO:0033365: protein localization to organelle	1.89E-03
62	GO:0000060: protein import into nucleus, translocation	1.89E-03
63	GO:0006301: postreplication repair	1.89E-03
64	GO:0006555: methionine metabolic process	1.89E-03
65	GO:0000045: autophagosome assembly	1.89E-03
66	GO:0009058: biosynthetic process	1.93E-03
67	GO:0010076: maintenance of floral meristem identity	2.27E-03
68	GO:0010077: maintenance of inflorescence meristem identity	2.27E-03
69	GO:1901001: negative regulation of response to salt stress	2.27E-03
70	GO:0009396: folic acid-containing compound biosynthetic process	2.67E-03
71	GO:0050790: regulation of catalytic activity	2.67E-03
72	GO:0030091: protein repair	3.09E-03
73	GO:0050821: protein stabilization	3.09E-03
74	GO:0009231: riboflavin biosynthetic process	3.09E-03
75	GO:0006102: isocitrate metabolic process	3.09E-03
76	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.09E-03
77	GO:0010043: response to zinc ion	3.45E-03
78	GO:0048527: lateral root development	3.45E-03
79	GO:0015996: chlorophyll catabolic process	3.54E-03
80	GO:0009880: embryonic pattern specification	3.54E-03
81	GO:0019430: removal of superoxide radicals	3.54E-03
82	GO:0009853: photorespiration	3.78E-03
83	GO:0090305: nucleic acid phosphodiester bond hydrolysis	4.00E-03
84	GO:0035999: tetrahydrofolate interconversion	4.49E-03
85	GO:0042761: very long-chain fatty acid biosynthetic process	4.49E-03
86	GO:0006995: cellular response to nitrogen starvation	4.99E-03
87	GO:0009641: shade avoidance	4.99E-03
88	GO:0006879: cellular iron ion homeostasis	5.52E-03
89	GO:0009682: induced systemic resistance	5.52E-03
90	GO:0035556: intracellular signal transduction	5.53E-03
91	GO:0010582: floral meristem determinacy	6.06E-03
92	GO:0009691: cytokinin biosynthetic process	6.61E-03
93	GO:0050826: response to freezing	6.61E-03
94	GO:0006829: zinc II ion transport	6.61E-03
95	GO:0048440: carpel development	7.20E-03
96	GO:0000162: tryptophan biosynthetic process	8.41E-03
97	GO:2000377: regulation of reactive oxygen species metabolic process	9.03E-03
98	GO:0006487: protein N-linked glycosylation	9.03E-03
99	GO:0009116: nucleoside metabolic process	9.03E-03
100	GO:0008299: isoprenoid biosynthetic process	9.69E-03
101	GO:0006418: tRNA aminoacylation for protein translation	9.69E-03
102	GO:0061077: chaperone-mediated protein folding	1.03E-02
103	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.10E-02
104	GO:0001944: vasculature development	1.17E-02
105	GO:0006012: galactose metabolic process	1.17E-02
106	GO:0009693: ethylene biosynthetic process	1.17E-02
107	GO:0006284: base-excision repair	1.24E-02
108	GO:0016117: carotenoid biosynthetic process	1.32E-02
109	GO:0010118: stomatal movement	1.39E-02
110	GO:0015991: ATP hydrolysis coupled proton transport	1.39E-02
111	GO:0009646: response to absence of light	1.54E-02
112	GO:0010150: leaf senescence	1.62E-02
113	GO:0002229: defense response to oomycetes	1.70E-02
114	GO:0006635: fatty acid beta-oxidation	1.70E-02
115	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	1.70E-02
116	GO:1901657: glycosyl compound metabolic process	1.87E-02
117	GO:0006464: cellular protein modification process	1.95E-02
118	GO:0006914: autophagy	1.95E-02
119	GO:0016126: sterol biosynthetic process	2.21E-02
120	GO:0006906: vesicle fusion	2.39E-02
121	GO:0042128: nitrate assimilation	2.39E-02
122	GO:0010411: xyloglucan metabolic process	2.48E-02
123	GO:0048573: photoperiodism, flowering	2.48E-02
124	GO:0006950: response to stress	2.48E-02
125	GO:0015995: chlorophyll biosynthetic process	2.48E-02
126	GO:0016311: dephosphorylation	2.58E-02
127	GO:0048481: plant ovule development	2.67E-02
128	GO:0006970: response to osmotic stress	2.70E-02
129	GO:0005975: carbohydrate metabolic process	2.75E-02
130	GO:0009407: toxin catabolic process	2.87E-02
131	GO:0007568: aging	2.96E-02
132	GO:0010119: regulation of stomatal movement	2.96E-02
133	GO:0009867: jasmonic acid mediated signaling pathway	3.16E-02
134	GO:0009651: response to salt stress	3.25E-02
135	GO:0006099: tricarboxylic acid cycle	3.27E-02
136	GO:0030001: metal ion transport	3.47E-02
137	GO:0006887: exocytosis	3.58E-02
138	GO:0009640: photomorphogenesis	3.79E-02
139	GO:0009744: response to sucrose	3.79E-02
140	GO:0009636: response to toxic substance	4.12E-02
141	GO:0000165: MAPK cascade	4.34E-02
142	GO:0031347: regulation of defense response	4.34E-02
143	GO:0042538: hyperosmotic salinity response	4.45E-02
144	GO:0009737: response to abscisic acid	4.50E-02
145	GO:0006629: lipid metabolic process	4.57E-02
146	GO:0009809: lignin biosynthetic process	4.68E-02
147	GO:0006486: protein glycosylation	4.68E-02
148	GO:0009585: red, far-red light phototransduction	4.68E-02
149	GO:0009736: cytokinin-activated signaling pathway	4.68E-02
150	GO:0010224: response to UV-B	4.80E-02
151	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
2	GO:0102996: beta,beta digalactosyldiacylglycerol galactosyltransferase activity	0.00E+00
3	GO:0052887: 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity	0.00E+00
4	GO:0052669: CTP:2-trans,-6-trans-farnesol kinase activity	0.00E+00
5	GO:0008897: holo-[acyl-carrier-protein] synthase activity	0.00E+00
6	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
7	GO:0047501: (+)-neomenthol dehydrogenase activity	0.00E+00
8	GO:0052886: 9,9'-dicis-carotene:quinone oxidoreductase activity	0.00E+00
9	GO:0042030: ATPase inhibitor activity	0.00E+00
10	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
11	GO:0052670: geraniol kinase activity	0.00E+00
12	GO:0052668: farnesol kinase activity	0.00E+00
13	GO:0016719: carotene 7,8-desaturase activity	0.00E+00
14	GO:0052925: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase activity	0.00E+00
15	GO:0000033: alpha-1,3-mannosyltransferase activity	0.00E+00
16	GO:0052671: geranylgeraniol kinase activity	0.00E+00
17	GO:0047504: (-)-menthol dehydrogenase activity	0.00E+00
18	GO:0015205: nucleobase transmembrane transporter activity	0.00E+00
19	GO:0008106: alcohol dehydrogenase (NADP+) activity	1.24E-05
20	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	5.54E-05
21	GO:0004793: threonine aldolase activity	1.73E-04
22	GO:0004452: isopentenyl-diphosphate delta-isomerase activity	1.73E-04
23	GO:0016783: sulfurtransferase activity	1.73E-04
24	GO:0052917: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase activity	1.73E-04
25	GO:0004307: ethanolaminephosphotransferase activity	1.73E-04
26	GO:0019707: protein-cysteine S-acyltransferase activity	1.73E-04
27	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	1.73E-04
28	GO:0008732: L-allo-threonine aldolase activity	1.73E-04
29	GO:0008782: adenosylhomocysteine nucleosidase activity	1.73E-04
30	GO:0008930: methylthioadenosine nucleosidase activity	1.73E-04
31	GO:0045153: electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity	1.73E-04
32	GO:0008793: aromatic-amino-acid:2-oxoglutarate aminotransferase activity	1.73E-04
33	GO:0016784: 3-mercaptopyruvate sulfurtransferase activity	1.73E-04
34	GO:0046480: galactolipid galactosyltransferase activity	1.73E-04
35	GO:0080079: cellobiose glucosidase activity	1.73E-04
36	GO:0004560: alpha-L-fucosidase activity	1.73E-04
37	GO:0016776: phosphotransferase activity, phosphate group as acceptor	1.73E-04
38	GO:0004824: lysine-tRNA ligase activity	1.73E-04
39	GO:0004719: protein-L-isoaspartate (D-aspartate) O-methyltransferase activity	1.73E-04
40	GO:0016780: phosphotransferase activity, for other substituted phosphate groups	1.73E-04
41	GO:0008802: betaine-aldehyde dehydrogenase activity	1.73E-04
42	GO:0004048: anthranilate phosphoribosyltransferase activity	1.73E-04
43	GO:0004142: diacylglycerol cholinephosphotransferase activity	3.92E-04
44	GO:0004061: arylformamidase activity	3.92E-04
45	GO:0008967: phosphoglycolate phosphatase activity	3.92E-04
46	GO:0004450: isocitrate dehydrogenase (NADP+) activity	3.92E-04
47	GO:0008686: 3,4-dihydroxy-2-butanone-4-phosphate synthase activity	3.92E-04
48	GO:0030572: phosphatidyltransferase activity	3.92E-04
49	GO:0003935: GTP cyclohydrolase II activity	6.40E-04
50	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.40E-04
51	GO:0004792: thiosulfate sulfurtransferase activity	9.13E-04
52	GO:0003883: CTP synthase activity	9.13E-04
53	GO:0016656: monodehydroascorbate reductase (NADH) activity	9.13E-04
54	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	9.13E-04
55	GO:0000254: C-4 methylsterol oxidase activity	9.13E-04
56	GO:0003995: acyl-CoA dehydrogenase activity	1.21E-03
57	GO:0019776: Atg8 ligase activity	1.21E-03
58	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.21E-03
59	GO:0019104: DNA N-glycosylase activity	1.21E-03
60	GO:0003824: catalytic activity	1.29E-03
61	GO:0003997: acyl-CoA oxidase activity	1.54E-03
62	GO:0005496: steroid binding	1.54E-03
63	GO:0004356: glutamate-ammonia ligase activity	1.54E-03
64	GO:0016407: acetyltransferase activity	1.54E-03
65	GO:0008137: NADH dehydrogenase (ubiquinone) activity	1.60E-03
66	GO:0016491: oxidoreductase activity	1.85E-03
67	GO:0004029: aldehyde dehydrogenase (NAD) activity	1.89E-03
68	GO:0004784: superoxide dismutase activity	1.89E-03
69	GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity	1.89E-03
70	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	1.89E-03
71	GO:0004605: phosphatidate cytidylyltransferase activity	1.89E-03
72	GO:0070300: phosphatidic acid binding	2.27E-03
73	GO:0008143: poly(A) binding	2.67E-03
74	GO:0016621: cinnamoyl-CoA reductase activity	2.67E-03
75	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	3.09E-03
76	GO:0004034: aldose 1-epimerase activity	3.09E-03
77	GO:0015078: hydrogen ion transmembrane transporter activity	3.54E-03
78	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	4.00E-03
79	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	4.49E-03
80	GO:0051537: 2 iron, 2 sulfur cluster binding	5.26E-03
81	GO:0046961: proton-transporting ATPase activity, rotational mechanism	5.52E-03
82	GO:0008378: galactosyltransferase activity	6.06E-03
83	GO:0015266: protein channel activity	6.61E-03
84	GO:0004672: protein kinase activity	7.95E-03
85	GO:0042803: protein homodimerization activity	8.28E-03
86	GO:0005528: FK506 binding	9.03E-03
87	GO:0008408: 3'-5' exonuclease activity	1.03E-02
88	GO:0030170: pyridoxal phosphate binding	1.30E-02
89	GO:0004812: aminoacyl-tRNA ligase activity	1.32E-02
90	GO:0046873: metal ion transmembrane transporter activity	1.47E-02
91	GO:0016787: hydrolase activity	1.53E-02
92	GO:0050662: coenzyme binding	1.54E-02
93	GO:0016853: isomerase activity	1.54E-02
94	GO:0048038: quinone binding	1.70E-02
95	GO:0004197: cysteine-type endopeptidase activity	1.78E-02
96	GO:0016791: phosphatase activity	1.95E-02
97	GO:0008483: transaminase activity	2.04E-02
98	GO:0016597: amino acid binding	2.12E-02
99	GO:0016413: O-acetyltransferase activity	2.12E-02
100	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.39E-02
101	GO:0000287: magnesium ion binding	2.46E-02
102	GO:0004683: calmodulin-dependent protein kinase activity	2.48E-02
103	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.67E-02
104	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.87E-02
105	GO:0050660: flavin adenine dinucleotide binding	2.90E-02
106	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.16E-02
107	GO:0008422: beta-glucosidase activity	3.37E-02
108	GO:0000149: SNARE binding	3.37E-02
109	GO:0004364: glutathione transferase activity	3.68E-02
110	GO:0005484: SNAP receptor activity	3.79E-02
111	GO:0043621: protein self-association	4.01E-02
112	GO:0005198: structural molecule activity	4.12E-02
113	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.23E-02
114	GO:0051287: NAD binding	4.34E-02
115	GO:0005506: iron ion binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005747: mitochondrial respiratory chain complex I	4.51E-07
2	GO:0009507: chloroplast	9.67E-07
3	GO:0005829: cytosol	1.13E-04
4	GO:0031932: TORC2 complex	1.73E-04
5	GO:0000152: nuclear ubiquitin ligase complex	1.73E-04
6	GO:0005759: mitochondrial matrix	3.80E-04
7	GO:0034274: Atg12-Atg5-Atg16 complex	3.92E-04
8	GO:0009509: chromoplast	6.40E-04
9	GO:0031931: TORC1 complex	6.40E-04
10	GO:0005739: mitochondrion	7.74E-04
11	GO:0005737: cytoplasm	1.11E-03
12	GO:0031969: chloroplast membrane	1.18E-03
13	GO:0009526: plastid envelope	1.21E-03
14	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.21E-03
15	GO:0009527: plastid outer membrane	1.21E-03
16	GO:0031372: UBC13-MMS2 complex	1.21E-03
17	GO:0000220: vacuolar proton-transporting V-type ATPase, V0 domain	1.54E-03
18	GO:0005746: mitochondrial respiratory chain	1.54E-03
19	GO:0009840: chloroplastic endopeptidase Clp complex	2.27E-03
20	GO:0009570: chloroplast stroma	2.31E-03
21	GO:0031359: integral component of chloroplast outer membrane	2.67E-03
22	GO:0009501: amyloplast	3.09E-03
23	GO:0034045: pre-autophagosomal structure membrane	3.54E-03
24	GO:0009514: glyoxysome	3.54E-03
25	GO:0005773: vacuole	3.81E-03
26	GO:0042644: chloroplast nucleoid	4.00E-03
27	GO:0031901: early endosome membrane	4.00E-03
28	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.00E-03
29	GO:0016604: nuclear body	4.49E-03
30	GO:0005777: peroxisome	6.28E-03
31	GO:0005750: mitochondrial respiratory chain complex III	7.20E-03
32	GO:0005764: lysosome	7.20E-03
33	GO:0016607: nuclear speck	8.00E-03
34	GO:0009941: chloroplast envelope	8.09E-03
35	GO:0005789: endoplasmic reticulum membrane	8.51E-03
36	GO:0005758: mitochondrial intermembrane space	9.03E-03
37	GO:0042651: thylakoid membrane	9.69E-03
38	GO:0045271: respiratory chain complex I	9.69E-03
39	GO:0009532: plastid stroma	1.03E-02
40	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.24E-02
41	GO:0005778: peroxisomal membrane	2.04E-02
42	GO:0010319: stromule	2.04E-02
43	GO:0009707: chloroplast outer membrane	2.67E-02
44	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.75E-02
45	GO:0031201: SNARE complex	3.58E-02
46	GO:0016021: integral component of membrane	4.00E-02
47	GO:0031966: mitochondrial membrane	4.45E-02
48	GO:0005783: endoplasmic reticulum	4.55E-02
49	GO:0009535: chloroplast thylakoid membrane	4.83E-02