Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G27980

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1990569: UDP-N-acetylglucosamine transmembrane transport0.00E+00
2GO:0023052: signaling0.00E+00
3GO:0015789: UDP-N-acetylgalactosamine transport0.00E+00
4GO:1901997: negative regulation of indoleacetic acid biosynthetic process via tryptophan0.00E+00
5GO:0001881: receptor recycling0.00E+00
6GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
7GO:1903070: negative regulation of ER-associated ubiquitin-dependent protein catabolic process0.00E+00
8GO:1903857: negative regulation of cytokinin dehydrogenase activity0.00E+00
9GO:0009264: deoxyribonucleotide catabolic process0.00E+00
10GO:0006511: ubiquitin-dependent protein catabolic process3.23E-06
11GO:0006102: isocitrate metabolic process6.75E-06
12GO:0046686: response to cadmium ion1.87E-05
13GO:0001676: long-chain fatty acid metabolic process2.94E-05
14GO:0006820: anion transport3.85E-05
15GO:0006869: lipid transport4.23E-05
16GO:0006564: L-serine biosynthetic process8.37E-05
17GO:0006097: glyoxylate cycle8.37E-05
18GO:0009651: response to salt stress9.78E-05
19GO:0009058: biosynthetic process1.31E-04
20GO:0031540: regulation of anthocyanin biosynthetic process2.76E-04
21GO:1901349: glucosinolate transport2.82E-04
22GO:0015812: gamma-aminobutyric acid transport2.82E-04
23GO:0090449: phloem glucosinolate loading2.82E-04
24GO:0019605: butyrate metabolic process2.82E-04
25GO:0042964: thioredoxin reduction2.82E-04
26GO:0015798: myo-inositol transport2.82E-04
27GO:0010201: response to continuous far red light stimulus by the high-irradiance response system2.82E-04
28GO:0006083: acetate metabolic process2.82E-04
29GO:1990542: mitochondrial transmembrane transport2.82E-04
30GO:0060178: regulation of exocyst localization2.82E-04
31GO:0009820: alkaloid metabolic process2.82E-04
32GO:0010365: positive regulation of ethylene biosynthetic process2.82E-04
33GO:0006739: NADP metabolic process6.19E-04
34GO:0006101: citrate metabolic process6.19E-04
35GO:0015786: UDP-glucose transport6.19E-04
36GO:0051788: response to misfolded protein6.19E-04
37GO:0043132: NAD transport6.19E-04
38GO:1990069: stomatal opening6.19E-04
39GO:0006123: mitochondrial electron transport, cytochrome c to oxygen6.19E-04
40GO:0010072: primary shoot apical meristem specification6.54E-04
41GO:0006807: nitrogen compound metabolic process8.46E-04
42GO:0010043: response to zinc ion9.36E-04
43GO:0002237: response to molecule of bacterial origin9.50E-04
44GO:0042744: hydrogen peroxide catabolic process9.50E-04
45GO:0008333: endosome to lysosome transport1.00E-03
46GO:0008652: cellular amino acid biosynthetic process1.00E-03
47GO:0044375: regulation of peroxisome size1.00E-03
48GO:0015783: GDP-fucose transport1.00E-03
49GO:0010366: negative regulation of ethylene biosynthetic process1.00E-03
50GO:0006099: tricarboxylic acid cycle1.11E-03
51GO:0006631: fatty acid metabolic process1.30E-03
52GO:0009647: skotomorphogenesis1.44E-03
53GO:0072334: UDP-galactose transmembrane transport1.44E-03
54GO:0006168: adenine salvage1.44E-03
55GO:0009743: response to carbohydrate1.44E-03
56GO:0015858: nucleoside transport1.44E-03
57GO:0046513: ceramide biosynthetic process1.44E-03
58GO:0046836: glycolipid transport1.44E-03
59GO:0009413: response to flooding1.44E-03
60GO:0006166: purine ribonucleoside salvage1.44E-03
61GO:0048511: rhythmic process1.58E-03
62GO:0010363: regulation of plant-type hypersensitive response1.92E-03
63GO:0032968: positive regulation of transcription elongation from RNA polymerase II promoter1.92E-03
64GO:0051365: cellular response to potassium ion starvation1.92E-03
65GO:0048442: sepal development1.92E-03
66GO:0051603: proteolysis involved in cellular protein catabolic process2.19E-03
67GO:0009737: response to abscisic acid2.36E-03
68GO:0010051: xylem and phloem pattern formation2.39E-03
69GO:0009697: salicylic acid biosynthetic process2.46E-03
70GO:0032957: inositol trisphosphate metabolic process2.46E-03
71GO:0097428: protein maturation by iron-sulfur cluster transfer2.46E-03
72GO:0036065: fucosylation2.46E-03
73GO:1902183: regulation of shoot apical meristem development2.46E-03
74GO:0044209: AMP salvage2.46E-03
75GO:0045116: protein neddylation2.46E-03
76GO:0010154: fruit development2.58E-03
77GO:0006623: protein targeting to vacuole2.97E-03
78GO:0010183: pollen tube guidance2.97E-03
79GO:0043248: proteasome assembly3.03E-03
80GO:0048831: regulation of shoot system development3.03E-03
81GO:0009635: response to herbicide3.03E-03
82GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.03E-03
83GO:0009228: thiamine biosynthetic process3.03E-03
84GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.03E-03
85GO:0010193: response to ozone3.18E-03
86GO:0009735: response to cytokinin3.47E-03
87GO:0030163: protein catabolic process3.62E-03
88GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response3.65E-03
89GO:0000245: spliceosomal complex assembly3.65E-03
90GO:0009648: photoperiodism3.65E-03
91GO:0055114: oxidation-reduction process3.69E-03
92GO:0006744: ubiquinone biosynthetic process4.30E-03
93GO:1900056: negative regulation of leaf senescence4.30E-03
94GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c4.30E-03
95GO:1900057: positive regulation of leaf senescence4.30E-03
96GO:0050829: defense response to Gram-negative bacterium4.30E-03
97GO:0006401: RNA catabolic process4.30E-03
98GO:0009610: response to symbiotic fungus4.30E-03
99GO:0048528: post-embryonic root development4.30E-03
100GO:0016579: protein deubiquitination4.33E-03
101GO:0006979: response to oxidative stress4.40E-03
102GO:0045454: cell redox homeostasis4.50E-03
103GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.99E-03
104GO:0009642: response to light intensity4.99E-03
105GO:0009690: cytokinin metabolic process4.99E-03
106GO:0019430: removal of superoxide radicals5.72E-03
107GO:0006367: transcription initiation from RNA polymerase II promoter5.72E-03
108GO:0010417: glucuronoxylan biosynthetic process5.72E-03
109GO:0007389: pattern specification process5.72E-03
110GO:0046685: response to arsenic-containing substance6.48E-03
111GO:0090305: nucleic acid phosphodiester bond hydrolysis6.48E-03
112GO:0006754: ATP biosynthetic process6.48E-03
113GO:0048589: developmental growth6.48E-03
114GO:0015780: nucleotide-sugar transport6.48E-03
115GO:0098656: anion transmembrane transport6.48E-03
116GO:0006811: ion transport6.60E-03
117GO:0042761: very long-chain fatty acid biosynthetic process7.28E-03
118GO:0048354: mucilage biosynthetic process involved in seed coat development7.28E-03
119GO:0006032: chitin catabolic process8.11E-03
120GO:0048441: petal development8.11E-03
121GO:0048829: root cap development8.11E-03
122GO:0009641: shade avoidance8.11E-03
123GO:0006298: mismatch repair8.11E-03
124GO:0009617: response to bacterium8.27E-03
125GO:0072593: reactive oxygen species metabolic process8.97E-03
126GO:0009682: induced systemic resistance8.97E-03
127GO:0000272: polysaccharide catabolic process8.97E-03
128GO:0015706: nitrate transport9.88E-03
129GO:0008361: regulation of cell size9.88E-03
130GO:0008643: carbohydrate transport1.06E-02
131GO:0006626: protein targeting to mitochondrion1.08E-02
132GO:0009636: response to toxic substance1.10E-02
133GO:0007034: vacuolar transport1.18E-02
134GO:0009846: pollen germination1.23E-02
135GO:0042343: indole glucosinolate metabolic process1.28E-02
136GO:0010167: response to nitrate1.28E-02
137GO:0090351: seedling development1.28E-02
138GO:0009969: xyloglucan biosynthetic process1.28E-02
139GO:0009414: response to water deprivation1.33E-02
140GO:0000162: tryptophan biosynthetic process1.38E-02
141GO:0034976: response to endoplasmic reticulum stress1.38E-02
142GO:0048366: leaf development1.42E-02
143GO:0006857: oligopeptide transport1.42E-02
144GO:0009116: nucleoside metabolic process1.48E-02
145GO:0030150: protein import into mitochondrial matrix1.48E-02
146GO:0006289: nucleotide-excision repair1.48E-02
147GO:0080167: response to karrikin1.51E-02
148GO:0006096: glycolytic process1.57E-02
149GO:0008299: isoprenoid biosynthetic process1.59E-02
150GO:0048367: shoot system development1.62E-02
151GO:0015992: proton transport1.70E-02
152GO:0098542: defense response to other organism1.70E-02
153GO:0016226: iron-sulfur cluster assembly1.81E-02
154GO:0030433: ubiquitin-dependent ERAD pathway1.81E-02
155GO:0035428: hexose transmembrane transport1.81E-02
156GO:0080092: regulation of pollen tube growth1.81E-02
157GO:0030245: cellulose catabolic process1.81E-02
158GO:0010584: pollen exine formation2.05E-02
159GO:0045492: xylan biosynthetic process2.05E-02
160GO:0009561: megagametogenesis2.05E-02
161GO:0042147: retrograde transport, endosome to Golgi2.17E-02
162GO:0042631: cellular response to water deprivation2.29E-02
163GO:0000413: protein peptidyl-prolyl isomerization2.29E-02
164GO:0010118: stomatal movement2.29E-02
165GO:0015991: ATP hydrolysis coupled proton transport2.29E-02
166GO:0009409: response to cold2.32E-02
167GO:0008360: regulation of cell shape2.42E-02
168GO:0010197: polar nucleus fusion2.42E-02
169GO:0046323: glucose import2.42E-02
170GO:0009751: response to salicylic acid2.43E-02
171GO:0048364: root development2.61E-02
172GO:0048825: cotyledon development2.67E-02
173GO:0009749: response to glucose2.67E-02
174GO:0009851: auxin biosynthetic process2.67E-02
175GO:0009753: response to jasmonic acid2.70E-02
176GO:0000302: response to reactive oxygen species2.81E-02
177GO:0040008: regulation of growth3.12E-02
178GO:0007623: circadian rhythm3.27E-02
179GO:0010150: leaf senescence3.27E-02
180GO:0009739: response to gibberellin3.65E-02
181GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process3.65E-02
182GO:0009734: auxin-activated signaling pathway3.79E-02
183GO:0010029: regulation of seed germination3.80E-02
184GO:0042128: nitrate assimilation3.95E-02
185GO:0042742: defense response to bacterium4.17E-02
186GO:0016049: cell growth4.25E-02
187GO:0009832: plant-type cell wall biogenesis4.56E-02
188GO:0009407: toxin catabolic process4.72E-02
189GO:0009834: plant-type secondary cell wall biogenesis4.72E-02
190GO:0010119: regulation of stomatal movement4.88E-02
191GO:0009733: response to auxin4.92E-02
RankGO TermAdjusted P value
1GO:0052873: FMN reductase (NADPH) activity0.00E+00
2GO:0044610: FMN transmembrane transporter activity0.00E+00
3GO:0003796: lysozyme activity0.00E+00
4GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
5GO:0008752: FMN reductase activity0.00E+00
6GO:0005463: UDP-N-acetylgalactosamine transmembrane transporter activity0.00E+00
7GO:0016881: acid-amino acid ligase activity0.00E+00
8GO:0004298: threonine-type endopeptidase activity2.37E-11
9GO:0008233: peptidase activity8.05E-09
10GO:0004617: phosphoglycerate dehydrogenase activity3.65E-06
11GO:0015288: porin activity6.75E-06
12GO:0008308: voltage-gated anion channel activity9.78E-06
13GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity1.22E-04
14GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity1.22E-04
15GO:0008289: lipid binding1.45E-04
16GO:0102391: decanoate--CoA ligase activity1.67E-04
17GO:0004467: long-chain fatty acid-CoA ligase activity2.19E-04
18GO:0051287: NAD binding2.68E-04
19GO:0000824: inositol tetrakisphosphate 3-kinase activity2.82E-04
20GO:0047326: inositol tetrakisphosphate 5-kinase activity2.82E-04
21GO:0047760: butyrate-CoA ligase activity2.82E-04
22GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.82E-04
23GO:0070401: NADP+ binding2.82E-04
24GO:0004048: anthranilate phosphoribosyltransferase activity2.82E-04
25GO:0015185: gamma-aminobutyric acid transmembrane transporter activity2.82E-04
26GO:0015230: FAD transmembrane transporter activity2.82E-04
27GO:0090448: glucosinolate:proton symporter activity2.82E-04
28GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.82E-04
29GO:0016229: steroid dehydrogenase activity2.82E-04
30GO:0003987: acetate-CoA ligase activity2.82E-04
31GO:0010013: N-1-naphthylphthalamic acid binding2.82E-04
32GO:0000287: magnesium ion binding4.94E-04
33GO:0004750: ribulose-phosphate 3-epimerase activity6.19E-04
34GO:0051724: NAD transporter activity6.19E-04
35GO:0050347: trans-octaprenyltranstransferase activity6.19E-04
36GO:0010326: methionine-oxo-acid transaminase activity6.19E-04
37GO:0047517: 1,4-beta-D-xylan synthase activity6.19E-04
38GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity6.19E-04
39GO:0019172: glyoxalase III activity6.19E-04
40GO:0008805: carbon-monoxide oxygenase activity6.19E-04
41GO:0004450: isocitrate dehydrogenase (NADP+) activity6.19E-04
42GO:0005366: myo-inositol:proton symporter activity6.19E-04
43GO:0008517: folic acid transporter activity6.19E-04
44GO:0004634: phosphopyruvate hydratase activity6.19E-04
45GO:0015228: coenzyme A transmembrane transporter activity6.19E-04
46GO:0050291: sphingosine N-acyltransferase activity6.19E-04
47GO:0004618: phosphoglycerate kinase activity6.19E-04
48GO:0019781: NEDD8 activating enzyme activity6.19E-04
49GO:0004047: aminomethyltransferase activity6.19E-04
50GO:0003994: aconitate hydratase activity6.19E-04
51GO:0003955: NAD(P)H dehydrogenase (quinone) activity1.00E-03
52GO:0008253: 5'-nucleotidase activity1.00E-03
53GO:0004148: dihydrolipoyl dehydrogenase activity1.00E-03
54GO:0052726: inositol-1,3,4-trisphosphate 5-kinase activity1.00E-03
55GO:0005457: GDP-fucose transmembrane transporter activity1.00E-03
56GO:0047325: inositol tetrakisphosphate 1-kinase activity1.00E-03
57GO:0015018: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity1.00E-03
58GO:0019201: nucleotide kinase activity1.44E-03
59GO:0003999: adenine phosphoribosyltransferase activity1.44E-03
60GO:0005460: UDP-glucose transmembrane transporter activity1.44E-03
61GO:0004449: isocitrate dehydrogenase (NAD+) activity1.44E-03
62GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.44E-03
63GO:0035198: miRNA binding1.44E-03
64GO:0017077: oxidative phosphorylation uncoupler activity1.44E-03
65GO:0017089: glycolipid transporter activity1.44E-03
66GO:0036459: thiol-dependent ubiquitinyl hydrolase activity1.58E-03
67GO:0070628: proteasome binding1.92E-03
68GO:0008022: protein C-terminus binding1.92E-03
69GO:0004576: oligosaccharyl transferase activity1.92E-03
70GO:0004659: prenyltransferase activity1.92E-03
71GO:0015368: calcium:cation antiporter activity1.92E-03
72GO:0051861: glycolipid binding1.92E-03
73GO:0015369: calcium:proton antiporter activity1.92E-03
74GO:0008514: organic anion transmembrane transporter activity2.04E-03
75GO:0005507: copper ion binding2.16E-03
76GO:0005459: UDP-galactose transmembrane transporter activity2.46E-03
77GO:0008641: small protein activating enzyme activity2.46E-03
78GO:0042285: xylosyltransferase activity2.46E-03
79GO:0080122: AMP transmembrane transporter activity2.46E-03
80GO:0004040: amidase activity2.46E-03
81GO:0004601: peroxidase activity2.47E-03
82GO:0004791: thioredoxin-disulfide reductase activity2.77E-03
83GO:0031593: polyubiquitin binding3.03E-03
84GO:0016208: AMP binding3.03E-03
85GO:0036402: proteasome-activating ATPase activity3.03E-03
86GO:0008200: ion channel inhibitor activity3.03E-03
87GO:0016887: ATPase activity3.20E-03
88GO:0004017: adenylate kinase activity3.65E-03
89GO:0005347: ATP transmembrane transporter activity3.65E-03
90GO:0004656: procollagen-proline 4-dioxygenase activity3.65E-03
91GO:0015217: ADP transmembrane transporter activity3.65E-03
92GO:0003684: damaged DNA binding3.85E-03
93GO:0005338: nucleotide-sugar transmembrane transporter activity4.30E-03
94GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity4.30E-03
95GO:0016597: amino acid binding4.33E-03
96GO:0052747: sinapyl alcohol dehydrogenase activity4.99E-03
97GO:0015491: cation:cation antiporter activity4.99E-03
98GO:0004033: aldo-keto reductase (NADP) activity4.99E-03
99GO:0030674: protein binding, bridging4.99E-03
100GO:0030170: pyridoxal phosphate binding5.00E-03
101GO:0000989: transcription factor activity, transcription factor binding6.48E-03
102GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism6.48E-03
103GO:0008417: fucosyltransferase activity6.48E-03
104GO:0045309: protein phosphorylated amino acid binding7.28E-03
105GO:0016844: strictosidine synthase activity7.28E-03
106GO:0015112: nitrate transmembrane transporter activity7.28E-03
107GO:0004568: chitinase activity8.11E-03
108GO:0019904: protein domain specific binding8.97E-03
109GO:0004177: aminopeptidase activity8.97E-03
110GO:0008559: xenobiotic-transporting ATPase activity8.97E-03
111GO:0004161: dimethylallyltranstransferase activity8.97E-03
112GO:0005524: ATP binding9.18E-03
113GO:0004364: glutathione transferase activity9.41E-03
114GO:0045551: cinnamyl-alcohol dehydrogenase activity9.88E-03
115GO:0020037: heme binding1.06E-02
116GO:0015266: protein channel activity1.08E-02
117GO:0017025: TBP-class protein binding1.28E-02
118GO:0004867: serine-type endopeptidase inhibitor activity1.28E-02
119GO:0043130: ubiquitin binding1.48E-02
120GO:0031418: L-ascorbic acid binding1.48E-02
121GO:0008810: cellulase activity1.93E-02
122GO:0003756: protein disulfide isomerase activity2.05E-02
123GO:0004722: protein serine/threonine phosphatase activity2.14E-02
124GO:0047134: protein-disulfide reductase activity2.17E-02
125GO:0005355: glucose transmembrane transporter activity2.54E-02
126GO:0010181: FMN binding2.54E-02
127GO:0016853: isomerase activity2.54E-02
128GO:0004843: thiol-dependent ubiquitin-specific protease activity2.81E-02
129GO:0004518: nuclease activity2.94E-02
130GO:0005351: sugar:proton symporter activity3.19E-02
131GO:0008483: transaminase activity3.36E-02
132GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity4.41E-02
133GO:0003824: catalytic activity4.77E-02
134GO:0050897: cobalt ion binding4.88E-02
135GO:0046982: protein heterodimerization activity4.93E-02
RankGO TermAdjusted P value
1GO:0000502: proteasome complex8.54E-14
2GO:0005829: cytosol4.38E-13
3GO:0005839: proteasome core complex2.37E-11
4GO:0005774: vacuolar membrane5.20E-10
5GO:0019773: proteasome core complex, alpha-subunit complex1.15E-07
6GO:0009506: plasmodesma1.51E-07
7GO:0005741: mitochondrial outer membrane5.06E-06
8GO:0005886: plasma membrane8.86E-06
9GO:0046930: pore complex9.78E-06
10GO:0046861: glyoxysomal membrane1.31E-05
11GO:0005783: endoplasmic reticulum1.69E-04
12GO:1903754: cortical microtubule plus-end2.82E-04
13GO:0009514: glyoxysome3.40E-04
14GO:0005777: peroxisome3.70E-04
15GO:0005794: Golgi apparatus4.59E-04
16GO:0005773: vacuole5.02E-04
17GO:0000015: phosphopyruvate hydratase complex6.19E-04
18GO:0005851: eukaryotic translation initiation factor 2B complex3.03E-03
19GO:0005771: multivesicular body3.03E-03
20GO:0030904: retromer complex3.03E-03
21GO:0031597: cytosolic proteasome complex3.65E-03
22GO:0022626: cytosolic ribosome3.75E-03
23GO:0005618: cell wall3.95E-03
24GO:0031595: nuclear proteasome complex4.30E-03
25GO:0016020: membrane4.58E-03
26GO:0005779: integral component of peroxisomal membrane5.72E-03
27GO:0005742: mitochondrial outer membrane translocase complex5.72E-03
28GO:0005759: mitochondrial matrix5.86E-03
29GO:0009570: chloroplast stroma5.91E-03
30GO:0009707: chloroplast outer membrane5.98E-03
31GO:0009536: plastid6.47E-03
32GO:0008540: proteasome regulatory particle, base subcomplex7.28E-03
33GO:0005737: cytoplasm8.03E-03
34GO:0005740: mitochondrial envelope8.11E-03
35GO:0017119: Golgi transport complex8.11E-03
36GO:0008541: proteasome regulatory particle, lid subcomplex8.97E-03
37GO:0090406: pollen tube9.80E-03
38GO:0005758: mitochondrial intermembrane space1.48E-02
39GO:0070469: respiratory chain1.59E-02
40GO:0031410: cytoplasmic vesicle1.81E-02
41GO:0009505: plant-type cell wall2.04E-02
42GO:0005743: mitochondrial inner membrane2.26E-02
43GO:0071944: cell periphery3.08E-02
44GO:0032580: Golgi cisterna membrane3.22E-02
45GO:0005778: peroxisomal membrane3.36E-02
46GO:0005788: endoplasmic reticulum lumen3.80E-02
47GO:0000325: plant-type vacuole4.88E-02
48GO:0015934: large ribosomal subunit4.88E-02
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Gene type



Gene DE type