co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G27640

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0015727: lactate transport	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0007172: signal complex assembly	0.00E+00
4	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
5	GO:0080127: fruit septum development	0.00E+00
6	GO:0015979: photosynthesis	1.62E-08
7	GO:0009773: photosynthetic electron transport in photosystem I	1.51E-07
8	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.38E-05
9	GO:0010027: thylakoid membrane organization	1.45E-05
10	GO:0010021: amylopectin biosynthetic process	2.56E-05
11	GO:0009768: photosynthesis, light harvesting in photosystem I	4.45E-05
12	GO:0042549: photosystem II stabilization	6.12E-05
13	GO:0065002: intracellular protein transmembrane transport	1.84E-04
14	GO:0043686: co-translational protein modification	1.84E-04
15	GO:0080093: regulation of photorespiration	1.84E-04
16	GO:0043007: maintenance of rDNA	1.84E-04
17	GO:0031998: regulation of fatty acid beta-oxidation	1.84E-04
18	GO:0043953: protein transport by the Tat complex	1.84E-04
19	GO:0010205: photoinhibition	2.64E-04
20	GO:0018298: protein-chromophore linkage	3.60E-04
21	GO:0019684: photosynthesis, light reaction	3.60E-04
22	GO:0097054: L-glutamate biosynthetic process	4.15E-04
23	GO:0080181: lateral root branching	4.15E-04
24	GO:0035304: regulation of protein dephosphorylation	4.15E-04
25	GO:0018026: peptidyl-lysine monomethylation	4.15E-04
26	GO:0016050: vesicle organization	6.76E-04
27	GO:0005977: glycogen metabolic process	6.76E-04
28	GO:0009405: pathogenesis	6.76E-04
29	GO:0010239: chloroplast mRNA processing	9.65E-04
30	GO:0006537: glutamate biosynthetic process	9.65E-04
31	GO:1901332: negative regulation of lateral root development	9.65E-04
32	GO:0019676: ammonia assimilation cycle	1.28E-03
33	GO:0015976: carbon utilization	1.28E-03
34	GO:0009765: photosynthesis, light harvesting	1.28E-03
35	GO:0015994: chlorophyll metabolic process	1.28E-03
36	GO:0022622: root system development	1.28E-03
37	GO:0006552: leucine catabolic process	1.28E-03
38	GO:0019252: starch biosynthetic process	1.63E-03
39	GO:0031365: N-terminal protein amino acid modification	1.63E-03
40	GO:0006097: glyoxylate cycle	1.63E-03
41	GO:0035434: copper ion transmembrane transport	1.63E-03
42	GO:0006465: signal peptide processing	1.63E-03
43	GO:0016120: carotene biosynthetic process	1.63E-03
44	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.01E-03
45	GO:0042793: transcription from plastid promoter	2.01E-03
46	GO:0003006: developmental process involved in reproduction	2.01E-03
47	GO:0030488: tRNA methylation	2.41E-03
48	GO:1901259: chloroplast rRNA processing	2.41E-03
49	GO:0006810: transport	2.73E-03
50	GO:0022904: respiratory electron transport chain	2.83E-03
51	GO:0032880: regulation of protein localization	2.83E-03
52	GO:0071446: cellular response to salicylic acid stimulus	2.83E-03
53	GO:0010196: nonphotochemical quenching	2.83E-03
54	GO:0009769: photosynthesis, light harvesting in photosystem II	2.83E-03
55	GO:1900057: positive regulation of leaf senescence	2.83E-03
56	GO:0009645: response to low light intensity stimulus	2.83E-03
57	GO:0016311: dephosphorylation	3.09E-03
58	GO:0005978: glycogen biosynthetic process	3.28E-03
59	GO:0010218: response to far red light	3.59E-03
60	GO:2000031: regulation of salicylic acid mediated signaling pathway	3.75E-03
61	GO:0009631: cold acclimation	3.76E-03
62	GO:0009637: response to blue light	4.12E-03
63	GO:0048507: meristem development	4.25E-03
64	GO:0010206: photosystem II repair	4.25E-03
65	GO:0005982: starch metabolic process	4.76E-03
66	GO:0009658: chloroplast organization	5.27E-03
67	GO:0010114: response to red light	5.30E-03
68	GO:0048829: root cap development	5.30E-03
69	GO:0031627: telomeric loop formation	5.30E-03
70	GO:0009416: response to light stimulus	5.81E-03
71	GO:0009089: lysine biosynthetic process via diaminopimelate	5.85E-03
72	GO:0009073: aromatic amino acid family biosynthetic process	5.85E-03
73	GO:0071365: cellular response to auxin stimulus	6.43E-03
74	GO:0010582: floral meristem determinacy	6.43E-03
75	GO:0006108: malate metabolic process	7.03E-03
76	GO:0018107: peptidyl-threonine phosphorylation	7.03E-03
77	GO:2000012: regulation of auxin polar transport	7.03E-03
78	GO:0010628: positive regulation of gene expression	7.03E-03
79	GO:0009934: regulation of meristem structural organization	7.64E-03
80	GO:0006302: double-strand break repair	7.64E-03
81	GO:0048467: gynoecium development	7.64E-03
82	GO:0010207: photosystem II assembly	7.64E-03
83	GO:0010030: positive regulation of seed germination	8.27E-03
84	GO:0045454: cell redox homeostasis	8.71E-03
85	GO:0006825: copper ion transport	1.03E-02
86	GO:0019915: lipid storage	1.10E-02
87	GO:0009269: response to desiccation	1.10E-02
88	GO:0051321: meiotic cell cycle	1.10E-02
89	GO:0019748: secondary metabolic process	1.17E-02
90	GO:0030245: cellulose catabolic process	1.17E-02
91	GO:0016117: carotenoid biosynthetic process	1.40E-02
92	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.40E-02
93	GO:0008284: positive regulation of cell proliferation	1.40E-02
94	GO:0042631: cellular response to water deprivation	1.48E-02
95	GO:0009958: positive gravitropism	1.56E-02
96	GO:0009646: response to absence of light	1.64E-02
97	GO:0006635: fatty acid beta-oxidation	1.81E-02
98	GO:0071554: cell wall organization or biogenesis	1.81E-02
99	GO:0032502: developmental process	1.90E-02
100	GO:0048235: pollen sperm cell differentiation	1.90E-02
101	GO:1901657: glycosyl compound metabolic process	1.99E-02
102	GO:0009567: double fertilization forming a zygote and endosperm	2.07E-02
103	GO:0001666: response to hypoxia	2.35E-02
104	GO:0009627: systemic acquired resistance	2.55E-02
105	GO:0009409: response to cold	2.64E-02
106	GO:0015995: chlorophyll biosynthetic process	2.64E-02
107	GO:0009834: plant-type secondary cell wall biogenesis	3.05E-02
108	GO:0005975: carbohydrate metabolic process	3.13E-02
109	GO:0048527: lateral root development	3.15E-02
110	GO:0009853: photorespiration	3.36E-02
111	GO:0006099: tricarboxylic acid cycle	3.47E-02
112	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.50E-02
113	GO:0009744: response to sucrose	4.03E-02
114	GO:0009644: response to high light intensity	4.26E-02
115	GO:0031347: regulation of defense response	4.61E-02
116	GO:0006364: rRNA processing	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
2	GO:0015129: lactate transmembrane transporter activity	0.00E+00
3	GO:0016166: phytoene dehydrogenase activity	0.00E+00
4	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
5	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
6	GO:0048039: ubiquinone binding	0.00E+00
7	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.56E-05
8	GO:0031409: pigment binding	3.20E-05
9	GO:0016041: glutamate synthase (ferredoxin) activity	1.84E-04
10	GO:0003985: acetyl-CoA C-acetyltransferase activity	1.84E-04
11	GO:0010242: oxygen evolving activity	1.84E-04
12	GO:0042586: peptide deformylase activity	1.84E-04
13	GO:0016168: chlorophyll binding	2.72E-04
14	GO:0047746: chlorophyllase activity	4.15E-04
15	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.15E-04
16	GO:0003844: 1,4-alpha-glucan branching enzyme activity	4.15E-04
17	GO:0019156: isoamylase activity	4.15E-04
18	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.15E-04
19	GO:0043169: cation binding	6.76E-04
20	GO:0090729: toxin activity	6.76E-04
21	GO:0016851: magnesium chelatase activity	9.65E-04
22	GO:0016279: protein-lysine N-methyltransferase activity	1.28E-03
23	GO:0080032: methyl jasmonate esterase activity	1.28E-03
24	GO:0051538: 3 iron, 4 sulfur cluster binding	1.63E-03
25	GO:0048038: quinone binding	1.74E-03
26	GO:0016615: malate dehydrogenase activity	2.01E-03
27	GO:0080030: methyl indole-3-acetate esterase activity	2.01E-03
28	GO:0004556: alpha-amylase activity	2.01E-03
29	GO:0004462: lactoylglutathione lyase activity	2.01E-03
30	GO:0030060: L-malate dehydrogenase activity	2.41E-03
31	GO:0009055: electron carrier activity	2.70E-03
32	GO:0004033: aldo-keto reductase (NADP) activity	3.28E-03
33	GO:0008173: RNA methyltransferase activity	3.75E-03
34	GO:0005375: copper ion transmembrane transporter activity	3.75E-03
35	GO:0030145: manganese ion binding	3.76E-03
36	GO:0071949: FAD binding	4.25E-03
37	GO:0003993: acid phosphatase activity	4.30E-03
38	GO:0043621: protein self-association	5.73E-03
39	GO:0003691: double-stranded telomeric DNA binding	5.85E-03
40	GO:0004521: endoribonuclease activity	6.43E-03
41	GO:0004089: carbonate dehydratase activity	7.03E-03
42	GO:0008266: poly(U) RNA binding	7.64E-03
43	GO:0008083: growth factor activity	7.64E-03
44	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	8.72E-03
45	GO:0015035: protein disulfide oxidoreductase activity	1.05E-02
46	GO:0008408: 3'-5' exonuclease activity	1.10E-02
47	GO:0033612: receptor serine/threonine kinase binding	1.10E-02
48	GO:0008810: cellulase activity	1.25E-02
49	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.17E-02
50	GO:0042802: identical protein binding	2.24E-02
51	GO:0016413: O-acetyltransferase activity	2.26E-02
52	GO:0015250: water channel activity	2.35E-02
53	GO:0008375: acetylglucosaminyltransferase activity	2.55E-02
54	GO:0102483: scopolin beta-glucosidase activity	2.64E-02
55	GO:0000287: magnesium ion binding	2.68E-02
56	GO:0016788: hydrolase activity, acting on ester bonds	2.79E-02
57	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.32E-02
58	GO:0008422: beta-glucosidase activity	3.58E-02
59	GO:0051539: 4 iron, 4 sulfur cluster binding	3.69E-02
60	GO:0004185: serine-type carboxypeptidase activity	4.03E-02
61	GO:0051537: 2 iron, 2 sulfur cluster binding	4.26E-02
62	GO:0005198: structural molecule activity	4.38E-02
63	GO:0004722: protein serine/threonine phosphatase activity	4.43E-02
64	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.50E-02
65	GO:0046872: metal ion binding	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
3	GO:0043235: receptor complex	0.00E+00
4	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
5	GO:0010368: chloroplast isoamylase complex	0.00E+00
6	GO:0009534: chloroplast thylakoid	1.11E-17
7	GO:0009535: chloroplast thylakoid membrane	1.95E-17
8	GO:0009507: chloroplast	8.69E-15
9	GO:0009941: chloroplast envelope	2.50E-09
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.58E-08
11	GO:0010287: plastoglobule	7.02E-08
12	GO:0009579: thylakoid	1.08E-07
13	GO:0030095: chloroplast photosystem II	3.88E-07
14	GO:0009570: chloroplast stroma	1.12E-06
15	GO:0009543: chloroplast thylakoid lumen	3.04E-05
16	GO:0009654: photosystem II oxygen evolving complex	4.45E-05
17	GO:0009522: photosystem I	1.23E-04
18	GO:0019898: extrinsic component of membrane	1.36E-04
19	GO:0005787: signal peptidase complex	1.84E-04
20	GO:0031361: integral component of thylakoid membrane	1.84E-04
21	GO:0000791: euchromatin	1.84E-04
22	GO:0009783: photosystem II antenna complex	1.84E-04
23	GO:0030870: Mre11 complex	4.15E-04
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.15E-04
25	GO:0009508: plastid chromosome	4.70E-04
26	GO:0030076: light-harvesting complex	5.92E-04
27	GO:0031977: thylakoid lumen	6.09E-04
28	GO:0010007: magnesium chelatase complex	6.76E-04
29	GO:0009509: chromoplast	6.76E-04
30	GO:0033281: TAT protein transport complex	6.76E-04
31	GO:0009517: PSII associated light-harvesting complex II	1.28E-03
32	GO:0009523: photosystem II	1.63E-03
33	GO:0000795: synaptonemal complex	1.63E-03
34	GO:0009295: nucleoid	2.23E-03
35	GO:0009533: chloroplast stromal thylakoid	2.83E-03
36	GO:0031305: integral component of mitochondrial inner membrane	3.28E-03
37	GO:0009501: amyloplast	3.28E-03
38	GO:0009538: photosystem I reaction center	3.28E-03
39	GO:0000783: nuclear telomere cap complex	3.75E-03
40	GO:0008180: COP9 signalosome	4.25E-03
41	GO:0005740: mitochondrial envelope	5.30E-03
42	GO:0009706: chloroplast inner membrane	1.02E-02
43	GO:0042651: thylakoid membrane	1.03E-02
44	GO:0048046: apoplast	1.60E-02
45	GO:0000785: chromatin	1.90E-02
46	GO:0019005: SCF ubiquitin ligase complex	2.84E-02
47	GO:0000325: plant-type vacuole	3.15E-02
48	GO:0000502: proteasome complex	4.98E-02