co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G27470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043462: regulation of ATPase activity	0.00E+00
2	GO:0009095: aromatic amino acid family biosynthetic process, prephenate pathway	0.00E+00
3	GO:1900363: regulation of mRNA polyadenylation	0.00E+00
4	GO:0055122: response to very low light intensity stimulus	0.00E+00
5	GO:0039694: viral RNA genome replication	0.00E+00
6	GO:0071426: ribonucleoprotein complex export from nucleus	0.00E+00
7	GO:0006364: rRNA processing	8.03E-09
8	GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.16E-07
9	GO:0010501: RNA secondary structure unwinding	2.69E-07
10	GO:0051131: chaperone-mediated protein complex assembly	3.15E-06
11	GO:0009553: embryo sac development	2.34E-05
12	GO:0006457: protein folding	3.51E-05
13	GO:0017183: peptidyl-diphthamide biosynthetic process from peptidyl-histidine	7.90E-05
14	GO:0010930: negative regulation of auxin mediated signaling pathway	7.90E-05
15	GO:0009303: rRNA transcription	7.90E-05
16	GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic	7.90E-05
17	GO:1902182: shoot apical meristem development	7.90E-05
18	GO:0071277: cellular response to calcium ion	7.90E-05
19	GO:0006446: regulation of translational initiation	1.65E-04
20	GO:1901684: arsenate ion transmembrane transport	1.89E-04
21	GO:0006611: protein export from nucleus	1.89E-04
22	GO:0031124: mRNA 3'-end processing	1.89E-04
23	GO:0019521: D-gluconate metabolic process	1.89E-04
24	GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	1.89E-04
25	GO:0042780: tRNA 3'-end processing	3.17E-04
26	GO:0000055: ribosomal large subunit export from nucleus	3.17E-04
27	GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic	3.17E-04
28	GO:0070475: rRNA base methylation	3.17E-04
29	GO:0045604: regulation of epidermal cell differentiation	3.17E-04
30	GO:0006421: asparaginyl-tRNA aminoacylation	3.17E-04
31	GO:0009408: response to heat	4.19E-04
32	GO:0007276: gamete generation	4.58E-04
33	GO:0006413: translational initiation	6.54E-04
34	GO:0016973: poly(A)+ mRNA export from nucleus	7.72E-04
35	GO:0007029: endoplasmic reticulum organization	7.72E-04
36	GO:0006405: RNA export from nucleus	7.72E-04
37	GO:0034052: positive regulation of plant-type hypersensitive response	7.72E-04
38	GO:0001731: formation of translation preinitiation complex	9.42E-04
39	GO:0016070: RNA metabolic process	9.42E-04
40	GO:0000470: maturation of LSU-rRNA	9.42E-04
41	GO:0030488: tRNA methylation	1.12E-03
42	GO:0048444: floral organ morphogenesis	1.12E-03
43	GO:0010077: maintenance of inflorescence meristem identity	1.12E-03
44	GO:0009094: L-phenylalanine biosynthetic process	1.12E-03
45	GO:0051301: cell division	1.13E-03
46	GO:0045995: regulation of embryonic development	1.31E-03
47	GO:0043068: positive regulation of programmed cell death	1.51E-03
48	GO:0000028: ribosomal small subunit assembly	1.51E-03
49	GO:0050821: protein stabilization	1.51E-03
50	GO:0006997: nucleus organization	1.72E-03
51	GO:2000031: regulation of salicylic acid mediated signaling pathway	1.72E-03
52	GO:0009880: embryonic pattern specification	1.72E-03
53	GO:0009051: pentose-phosphate shunt, oxidative branch	1.95E-03
54	GO:0000184: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	1.95E-03
55	GO:2000024: regulation of leaf development	1.95E-03
56	GO:0090332: stomatal closure	2.18E-03
57	GO:0006349: regulation of gene expression by genetic imprinting	2.18E-03
58	GO:0006417: regulation of translation	2.51E-03
59	GO:0009793: embryo development ending in seed dormancy	2.65E-03
60	GO:0009750: response to fructose	2.66E-03
61	GO:0006378: mRNA polyadenylation	2.66E-03
62	GO:0010015: root morphogenesis	2.66E-03
63	GO:0006396: RNA processing	3.31E-03
64	GO:0000027: ribosomal large subunit assembly	4.31E-03
65	GO:0030150: protein import into mitochondrial matrix	4.31E-03
66	GO:0010187: negative regulation of seed germination	4.31E-03
67	GO:0051302: regulation of cell division	4.61E-03
68	GO:0009790: embryo development	4.68E-03
69	GO:0061077: chaperone-mediated protein folding	4.92E-03
70	GO:0031348: negative regulation of defense response	5.24E-03
71	GO:0009451: RNA modification	5.65E-03
72	GO:0009561: megagametogenesis	5.89E-03
73	GO:0006817: phosphate ion transport	5.89E-03
74	GO:0051028: mRNA transport	6.22E-03
75	GO:0006606: protein import into nucleus	6.57E-03
76	GO:0010197: polar nucleus fusion	6.92E-03
77	GO:0006342: chromatin silencing	6.92E-03
78	GO:0009960: endosperm development	6.92E-03
79	GO:0048825: cotyledon development	7.64E-03
80	GO:0009749: response to glucose	7.64E-03
81	GO:0010286: heat acclimation	9.56E-03
82	GO:0048366: leaf development	1.01E-02
83	GO:0009911: positive regulation of flower development	1.04E-02
84	GO:0009816: defense response to bacterium, incompatible interaction	1.08E-02
85	GO:0048573: photoperiodism, flowering	1.16E-02
86	GO:0009834: plant-type secondary cell wall biogenesis	1.34E-02
87	GO:0016051: carbohydrate biosynthetic process	1.48E-02
88	GO:0045087: innate immune response	1.48E-02
89	GO:0009744: response to sucrose	1.77E-02
90	GO:0008283: cell proliferation	1.77E-02
91	GO:0009965: leaf morphogenesis	1.92E-02
92	GO:0006260: DNA replication	2.02E-02
93	GO:0046686: response to cadmium ion	2.31E-02
94	GO:0009909: regulation of flower development	2.35E-02
95	GO:0009626: plant-type hypersensitive response	2.58E-02
96	GO:0010228: vegetative to reproductive phase transition of meristem	4.28E-02

Rank	GO Term	Adjusted P value
1	GO:0033854: glutamate-prephenate aminotransferase activity	0.00E+00
2	GO:0015415: ATPase-coupled phosphate ion transmembrane transporter activity	0.00E+00
3	GO:0033853: aspartate-prephenate aminotransferase activity	0.00E+00
4	GO:0004164: diphthine synthase activity	0.00E+00
5	GO:0034511: U3 snoRNA binding	0.00E+00
6	GO:0004004: ATP-dependent RNA helicase activity	4.23E-10
7	GO:0008026: ATP-dependent helicase activity	6.83E-10
8	GO:0000166: nucleotide binding	7.23E-08
9	GO:0003723: RNA binding	1.22E-07
10	GO:0001054: RNA polymerase I activity	1.54E-06
11	GO:0030515: snoRNA binding	3.00E-05
12	GO:0009383: rRNA (cytosine-C5-)-methyltransferase activity	7.90E-05
13	GO:0017151: DEAD/H-box RNA helicase binding	7.90E-05
14	GO:0008114: phosphogluconate 2-dehydrogenase activity	7.90E-05
15	GO:0016891: endoribonuclease activity, producing 5'-phosphomonoesters	1.89E-04
16	GO:0043021: ribonucleoprotein complex binding	1.89E-04
17	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.23E-04
18	GO:0004816: asparagine-tRNA ligase activity	3.17E-04
19	GO:0042781: 3'-tRNA processing endoribonuclease activity	3.17E-04
20	GO:0051082: unfolded protein binding	3.57E-04
21	GO:0043023: ribosomal large subunit binding	4.58E-04
22	GO:0005524: ATP binding	6.88E-04
23	GO:0003743: translation initiation factor activity	8.64E-04
24	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	9.42E-04
25	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	9.42E-04
26	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	1.12E-03
27	GO:0003729: mRNA binding	1.22E-03
28	GO:0017056: structural constituent of nuclear pore	1.51E-03
29	GO:0005487: nucleocytoplasmic transporter activity	2.18E-03
30	GO:0005543: phospholipid binding	2.66E-03
31	GO:0004519: endonuclease activity	2.90E-03
32	GO:0004521: endoribonuclease activity	2.92E-03
33	GO:0001056: RNA polymerase III activity	2.92E-03
34	GO:0031072: heat shock protein binding	3.18E-03
35	GO:0015114: phosphate ion transmembrane transporter activity	3.18E-03
36	GO:0004386: helicase activity	3.50E-03
37	GO:0019843: rRNA binding	4.02E-03
38	GO:0003887: DNA-directed DNA polymerase activity	4.02E-03
39	GO:0043130: ubiquitin binding	4.31E-03
40	GO:0008375: acetylglucosaminyltransferase activity	1.12E-02
41	GO:0042393: histone binding	1.62E-02
42	GO:0015293: symporter activity	1.92E-02
43	GO:0003676: nucleic acid binding	2.44E-02
44	GO:0030170: pyridoxal phosphate binding	3.55E-02
45	GO:0015144: carbohydrate transmembrane transporter activity	3.75E-02
46	GO:0005351: sugar:proton symporter activity	4.08E-02
47	GO:0003677: DNA binding	4.11E-02
48	GO:0005525: GTP binding	4.57E-02

Rank	GO Term	Adjusted P value
1	GO:0034388: Pwp2p-containing subcomplex of 90S preribosome	0.00E+00
2	GO:0019034: viral replication complex	0.00E+00
3	GO:0005730: nucleolus	2.19E-18
4	GO:0005634: nucleus	5.33E-08
5	GO:0005736: DNA-directed RNA polymerase I complex	6.27E-07
6	GO:0032040: small-subunit processome	1.98E-06
7	GO:0005829: cytosol	1.43E-05
8	GO:0030687: preribosome, large subunit precursor	3.00E-05
9	GO:0034399: nuclear periphery	3.94E-05
10	GO:0030688: preribosome, small subunit precursor	7.90E-05
11	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	1.82E-04
12	GO:0044613: nuclear pore central transport channel	1.89E-04
13	GO:0070545: PeBoW complex	1.89E-04
14	GO:0005847: mRNA cleavage and polyadenylation specificity factor complex	7.72E-04
15	GO:0016282: eukaryotic 43S preinitiation complex	9.42E-04
16	GO:0033290: eukaryotic 48S preinitiation complex	1.12E-03
17	GO:0005666: DNA-directed RNA polymerase III complex	2.18E-03
18	GO:0005635: nuclear envelope	2.43E-03
19	GO:0005852: eukaryotic translation initiation factor 3 complex	2.66E-03
20	GO:0043234: protein complex	4.02E-03
21	GO:0005744: mitochondrial inner membrane presequence translocase complex	5.89E-03
22	GO:0005643: nuclear pore	1.25E-02
23	GO:0009506: plasmodesma	1.99E-02
24	GO:0005834: heterotrimeric G-protein complex	2.58E-02