co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G26360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0015810: aspartate transport	0.00E+00
3	GO:0080114: positive regulation of glycine hydroxymethyltransferase activity	0.00E+00
4	GO:0007172: signal complex assembly	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0010966: regulation of phosphate transport	0.00E+00
9	GO:0015827: tryptophan transport	0.00E+00
10	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
11	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
12	GO:0015979: photosynthesis	7.04E-12
13	GO:0009773: photosynthetic electron transport in photosystem I	4.12E-10
14	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.53E-07
15	GO:0042549: photosystem II stabilization	4.36E-06
16	GO:0018026: peptidyl-lysine monomethylation	7.70E-06
17	GO:0010027: thylakoid membrane organization	9.77E-06
18	GO:0010206: photosystem II repair	3.45E-05
19	GO:0010021: amylopectin biosynthetic process	1.02E-04
20	GO:0010207: photosystem II assembly	1.35E-04
21	GO:0018298: protein-chromophore linkage	2.21E-04
22	GO:0009768: photosynthesis, light harvesting in photosystem I	2.50E-04
23	GO:0061077: chaperone-mediated protein folding	2.85E-04
24	GO:0010196: nonphotochemical quenching	3.92E-04
25	GO:0043953: protein transport by the Tat complex	4.15E-04
26	GO:0000481: maturation of 5S rRNA	4.15E-04
27	GO:0042371: vitamin K biosynthetic process	4.15E-04
28	GO:0065002: intracellular protein transmembrane transport	4.15E-04
29	GO:0043686: co-translational protein modification	4.15E-04
30	GO:0046167: glycerol-3-phosphate biosynthetic process	4.15E-04
31	GO:0043007: maintenance of rDNA	4.15E-04
32	GO:0034337: RNA folding	4.15E-04
33	GO:0000476: maturation of 4.5S rRNA	4.15E-04
34	GO:0000967: rRNA 5'-end processing	4.15E-04
35	GO:0009642: response to light intensity	4.90E-04
36	GO:0010205: photoinhibition	8.44E-04
37	GO:0006741: NADP biosynthetic process	8.99E-04
38	GO:0006650: glycerophospholipid metabolic process	8.99E-04
39	GO:0097054: L-glutamate biosynthetic process	8.99E-04
40	GO:0006729: tetrahydrobiopterin biosynthetic process	8.99E-04
41	GO:0030388: fructose 1,6-bisphosphate metabolic process	8.99E-04
42	GO:0080181: lateral root branching	8.99E-04
43	GO:0034470: ncRNA processing	8.99E-04
44	GO:0035304: regulation of protein dephosphorylation	8.99E-04
45	GO:0043085: positive regulation of catalytic activity	1.13E-03
46	GO:0019684: photosynthesis, light reaction	1.13E-03
47	GO:0006810: transport	1.38E-03
48	GO:0015995: chlorophyll biosynthetic process	1.40E-03
49	GO:0009405: pathogenesis	1.46E-03
50	GO:0006954: inflammatory response	1.46E-03
51	GO:0090391: granum assembly	1.46E-03
52	GO:0005977: glycogen metabolic process	1.46E-03
53	GO:0019674: NAD metabolic process	1.46E-03
54	GO:0006000: fructose metabolic process	1.46E-03
55	GO:0046168: glycerol-3-phosphate catabolic process	1.46E-03
56	GO:0005975: carbohydrate metabolic process	1.50E-03
57	GO:0016311: dephosphorylation	1.50E-03
58	GO:1901332: negative regulation of lateral root development	2.11E-03
59	GO:0019363: pyridine nucleotide biosynthetic process	2.11E-03
60	GO:0006020: inositol metabolic process	2.11E-03
61	GO:0071484: cellular response to light intensity	2.11E-03
62	GO:0010239: chloroplast mRNA processing	2.11E-03
63	GO:0006072: glycerol-3-phosphate metabolic process	2.11E-03
64	GO:0006537: glutamate biosynthetic process	2.11E-03
65	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.11E-03
66	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.11E-03
67	GO:0019915: lipid storage	2.78E-03
68	GO:0045454: cell redox homeostasis	2.83E-03
69	GO:0006552: leucine catabolic process	2.84E-03
70	GO:0006021: inositol biosynthetic process	2.84E-03
71	GO:0019676: ammonia assimilation cycle	2.84E-03
72	GO:0015976: carbon utilization	2.84E-03
73	GO:0009765: photosynthesis, light harvesting	2.84E-03
74	GO:0006109: regulation of carbohydrate metabolic process	2.84E-03
75	GO:0015994: chlorophyll metabolic process	2.84E-03
76	GO:0022622: root system development	2.84E-03
77	GO:0016558: protein import into peroxisome matrix	3.63E-03
78	GO:0006564: L-serine biosynthetic process	3.63E-03
79	GO:0010236: plastoquinone biosynthetic process	3.63E-03
80	GO:0031365: N-terminal protein amino acid modification	3.63E-03
81	GO:0035434: copper ion transmembrane transport	3.63E-03
82	GO:0042793: transcription from plastid promoter	4.49E-03
83	GO:0010190: cytochrome b6f complex assembly	4.49E-03
84	GO:0003006: developmental process involved in reproduction	4.49E-03
85	GO:0046855: inositol phosphate dephosphorylation	4.49E-03
86	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	4.49E-03
87	GO:0006662: glycerol ether metabolic process	4.56E-03
88	GO:0019252: starch biosynthetic process	5.26E-03
89	GO:0042372: phylloquinone biosynthetic process	5.42E-03
90	GO:0042026: protein refolding	5.42E-03
91	GO:0006458: 'de novo' protein folding	5.42E-03
92	GO:1901259: chloroplast rRNA processing	5.42E-03
93	GO:0030488: tRNA methylation	5.42E-03
94	GO:0032502: developmental process	6.02E-03
95	GO:0009769: photosynthesis, light harvesting in photosystem II	6.41E-03
96	GO:1900057: positive regulation of leaf senescence	6.41E-03
97	GO:0009645: response to low light intensity stimulus	6.41E-03
98	GO:0022904: respiratory electron transport chain	6.41E-03
99	GO:0032880: regulation of protein localization	6.41E-03
100	GO:0009772: photosynthetic electron transport in photosystem II	6.41E-03
101	GO:0071446: cellular response to salicylic acid stimulus	6.41E-03
102	GO:0030091: protein repair	7.45E-03
103	GO:0032508: DNA duplex unwinding	7.45E-03
104	GO:0016559: peroxisome fission	7.45E-03
105	GO:0048564: photosystem I assembly	7.45E-03
106	GO:0005978: glycogen biosynthetic process	7.45E-03
107	GO:0017004: cytochrome complex assembly	8.55E-03
108	GO:2000031: regulation of salicylic acid mediated signaling pathway	8.55E-03
109	GO:0006002: fructose 6-phosphate metabolic process	8.55E-03
110	GO:0048507: meristem development	9.71E-03
111	GO:0005982: starch metabolic process	1.09E-02
112	GO:0006779: porphyrin-containing compound biosynthetic process	1.09E-02
113	GO:0010218: response to far red light	1.18E-02
114	GO:0006782: protoporphyrinogen IX biosynthetic process	1.22E-02
115	GO:0048829: root cap development	1.22E-02
116	GO:0031627: telomeric loop formation	1.22E-02
117	GO:0009631: cold acclimation	1.24E-02
118	GO:0009089: lysine biosynthetic process via diaminopimelate	1.35E-02
119	GO:0009073: aromatic amino acid family biosynthetic process	1.35E-02
120	GO:0009698: phenylpropanoid metabolic process	1.35E-02
121	GO:0009637: response to blue light	1.36E-02
122	GO:0034599: cellular response to oxidative stress	1.42E-02
123	GO:0010582: floral meristem determinacy	1.49E-02
124	GO:0071365: cellular response to auxin stimulus	1.49E-02
125	GO:0006790: sulfur compound metabolic process	1.49E-02
126	GO:0005983: starch catabolic process	1.49E-02
127	GO:0010628: positive regulation of gene expression	1.63E-02
128	GO:0018107: peptidyl-threonine phosphorylation	1.63E-02
129	GO:0006094: gluconeogenesis	1.63E-02
130	GO:0005986: sucrose biosynthetic process	1.63E-02
131	GO:2000012: regulation of auxin polar transport	1.63E-02
132	GO:0010114: response to red light	1.75E-02
133	GO:0010020: chloroplast fission	1.77E-02
134	GO:0019253: reductive pentose-phosphate cycle	1.77E-02
135	GO:0009266: response to temperature stimulus	1.77E-02
136	GO:0009934: regulation of meristem structural organization	1.77E-02
137	GO:0006302: double-strand break repair	1.77E-02
138	GO:0048467: gynoecium development	1.77E-02
139	GO:0055114: oxidation-reduction process	1.81E-02
140	GO:0005985: sucrose metabolic process	1.92E-02
141	GO:0019853: L-ascorbic acid biosynthetic process	1.92E-02
142	GO:0010030: positive regulation of seed germination	1.92E-02
143	GO:0046854: phosphatidylinositol phosphorylation	1.92E-02
144	GO:0006636: unsaturated fatty acid biosynthetic process	2.08E-02
145	GO:0009409: response to cold	2.39E-02
146	GO:0009658: chloroplast organization	2.40E-02
147	GO:0006825: copper ion transport	2.40E-02
148	GO:0019953: sexual reproduction	2.40E-02
149	GO:0051321: meiotic cell cycle	2.57E-02
150	GO:0048511: rhythmic process	2.57E-02
151	GO:0009269: response to desiccation	2.57E-02
152	GO:0019748: secondary metabolic process	2.74E-02
153	GO:0043086: negative regulation of catalytic activity	2.80E-02
154	GO:0006012: galactose metabolic process	2.91E-02
155	GO:0009561: megagametogenesis	3.09E-02
156	GO:0008284: positive regulation of cell proliferation	3.28E-02
157	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.28E-02
158	GO:0070417: cellular response to cold	3.28E-02
159	GO:0042631: cellular response to water deprivation	3.46E-02
160	GO:0009416: response to light stimulus	3.48E-02
161	GO:0009958: positive gravitropism	3.65E-02
162	GO:0006814: sodium ion transport	3.85E-02
163	GO:0042752: regulation of circadian rhythm	3.85E-02
164	GO:0009646: response to absence of light	3.85E-02
165	GO:0008654: phospholipid biosynthetic process	4.04E-02
166	GO:0071554: cell wall organization or biogenesis	4.24E-02
167	GO:0006635: fatty acid beta-oxidation	4.24E-02
168	GO:0048235: pollen sperm cell differentiation	4.44E-02
169	GO:1901657: glycosyl compound metabolic process	4.65E-02
170	GO:0009567: double fertilization forming a zygote and endosperm	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
3	GO:0042623: ATPase activity, coupled	0.00E+00
4	GO:0048039: ubiquinone binding	0.00E+00
5	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
6	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
7	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
8	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
9	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
10	GO:0016754: sinapoylglucose-malate O-sinapoyltransferase activity	0.00E+00
11	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
12	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.02E-06
13	GO:0004462: lactoylglutathione lyase activity	4.36E-06
14	GO:0005528: FK506 binding	1.10E-05
15	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.48E-05
16	GO:0016279: protein-lysine N-methyltransferase activity	1.02E-04
17	GO:0031409: pigment binding	1.88E-04
18	GO:0010242: oxygen evolving activity	4.15E-04
19	GO:0042586: peptide deformylase activity	4.15E-04
20	GO:0019203: carbohydrate phosphatase activity	4.15E-04
21	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	4.15E-04
22	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	4.15E-04
23	GO:0016041: glutamate synthase (ferredoxin) activity	4.15E-04
24	GO:0042736: NADH kinase activity	4.15E-04
25	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.15E-04
26	GO:0050308: sugar-phosphatase activity	4.15E-04
27	GO:0004033: aldo-keto reductase (NADP) activity	4.90E-04
28	GO:0048038: quinone binding	7.18E-04
29	GO:0052833: inositol monophosphate 4-phosphatase activity	8.99E-04
30	GO:0019172: glyoxalase III activity	8.99E-04
31	GO:0019156: isoamylase activity	8.99E-04
32	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	8.99E-04
33	GO:0015172: acidic amino acid transmembrane transporter activity	8.99E-04
34	GO:0047746: chlorophyllase activity	8.99E-04
35	GO:0042389: omega-3 fatty acid desaturase activity	8.99E-04
36	GO:0009977: proton motive force dependent protein transmembrane transporter activity	8.99E-04
37	GO:0004617: phosphoglycerate dehydrogenase activity	8.99E-04
38	GO:0052832: inositol monophosphate 3-phosphatase activity	8.99E-04
39	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	8.99E-04
40	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	8.99E-04
41	GO:0003844: 1,4-alpha-glucan branching enzyme activity	8.99E-04
42	GO:0008934: inositol monophosphate 1-phosphatase activity	8.99E-04
43	GO:0008047: enzyme activator activity	9.82E-04
44	GO:0016168: chlorophyll binding	1.22E-03
45	GO:0009055: electron carrier activity	1.24E-03
46	GO:0015035: protein disulfide oxidoreductase activity	1.38E-03
47	GO:0005504: fatty acid binding	1.46E-03
48	GO:0090729: toxin activity	1.46E-03
49	GO:0004751: ribose-5-phosphate isomerase activity	1.46E-03
50	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.46E-03
51	GO:0043169: cation binding	1.46E-03
52	GO:0003913: DNA photolyase activity	1.46E-03
53	GO:0031072: heat shock protein binding	1.47E-03
54	GO:0004565: beta-galactosidase activity	1.47E-03
55	GO:0016851: magnesium chelatase activity	2.11E-03
56	GO:0008508: bile acid:sodium symporter activity	2.11E-03
57	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	2.11E-03
58	GO:0015175: neutral amino acid transmembrane transporter activity	2.11E-03
59	GO:0004857: enzyme inhibitor activity	2.29E-03
60	GO:0045430: chalcone isomerase activity	2.84E-03
61	GO:0004659: prenyltransferase activity	2.84E-03
62	GO:0004045: aminoacyl-tRNA hydrolase activity	2.84E-03
63	GO:0080032: methyl jasmonate esterase activity	2.84E-03
64	GO:0051538: 3 iron, 4 sulfur cluster binding	3.63E-03
65	GO:0047134: protein-disulfide reductase activity	3.91E-03
66	GO:0004556: alpha-amylase activity	4.49E-03
67	GO:0042578: phosphoric ester hydrolase activity	4.49E-03
68	GO:2001070: starch binding	4.49E-03
69	GO:0080030: methyl indole-3-acetate esterase activity	4.49E-03
70	GO:0004791: thioredoxin-disulfide reductase activity	4.90E-03
71	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	5.42E-03
72	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.42E-03
73	GO:0009881: photoreceptor activity	6.41E-03
74	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	6.42E-03
75	GO:0051082: unfolded protein binding	6.85E-03
76	GO:0005375: copper ion transmembrane transporter activity	8.55E-03
77	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	8.55E-03
78	GO:0003951: NAD+ kinase activity	8.55E-03
79	GO:0008173: RNA methyltransferase activity	8.55E-03
80	GO:0047196: long-chain-alcohol O-fatty-acyltransferase activity	8.55E-03
81	GO:0103095: wax ester synthase activity	8.55E-03
82	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	9.71E-03
83	GO:0030145: manganese ion binding	1.24E-02
84	GO:0044183: protein binding involved in protein folding	1.35E-02
85	GO:0003691: double-stranded telomeric DNA binding	1.35E-02
86	GO:0003993: acid phosphatase activity	1.42E-02
87	GO:0008378: galactosyltransferase activity	1.49E-02
88	GO:0004521: endoribonuclease activity	1.49E-02
89	GO:0004089: carbonate dehydratase activity	1.63E-02
90	GO:0004185: serine-type carboxypeptidase activity	1.75E-02
91	GO:0008266: poly(U) RNA binding	1.77E-02
92	GO:0008083: growth factor activity	1.77E-02
93	GO:0042802: identical protein binding	1.87E-02
94	GO:0043621: protein self-association	1.90E-02
95	GO:0005198: structural molecule activity	1.97E-02
96	GO:0051287: NAD binding	2.13E-02
97	GO:0016787: hydrolase activity	2.35E-02
98	GO:0033612: receptor serine/threonine kinase binding	2.57E-02
99	GO:0008408: 3'-5' exonuclease activity	2.57E-02
100	GO:0003756: protein disulfide isomerase activity	3.09E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0010368: chloroplast isoamylase complex	0.00E+00
3	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
4	GO:0043235: receptor complex	0.00E+00
5	GO:0009507: chloroplast	7.61E-41
6	GO:0009535: chloroplast thylakoid membrane	1.47E-30
7	GO:0009534: chloroplast thylakoid	3.33E-24
8	GO:0009570: chloroplast stroma	1.47E-18
9	GO:0009543: chloroplast thylakoid lumen	2.30E-12
10	GO:0009579: thylakoid	3.94E-12
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.39E-11
12	GO:0009941: chloroplast envelope	9.75E-11
13	GO:0010287: plastoglobule	1.74E-08
14	GO:0030095: chloroplast photosystem II	1.13E-07
15	GO:0031977: thylakoid lumen	3.57E-06
16	GO:0009654: photosystem II oxygen evolving complex	1.37E-05
17	GO:0009538: photosystem I reaction center	1.77E-05
18	GO:0019898: extrinsic component of membrane	6.16E-05
19	GO:0009515: granal stacked thylakoid	4.15E-04
20	GO:0031361: integral component of thylakoid membrane	4.15E-04
21	GO:0000791: euchromatin	4.15E-04
22	GO:0009783: photosystem II antenna complex	4.15E-04
23	GO:0009522: photosystem I	6.03E-04
24	GO:0030870: Mre11 complex	8.99E-04
25	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.99E-04
26	GO:0033281: TAT protein transport complex	1.46E-03
27	GO:0010007: magnesium chelatase complex	1.46E-03
28	GO:0030076: light-harvesting complex	1.85E-03
29	GO:0009331: glycerol-3-phosphate dehydrogenase complex	2.11E-03
30	GO:0009517: PSII associated light-harvesting complex II	2.84E-03
31	GO:0000795: synaptonemal complex	3.63E-03
32	GO:0009523: photosystem II	5.26E-03
33	GO:0009533: chloroplast stromal thylakoid	6.41E-03
34	GO:0031305: integral component of mitochondrial inner membrane	7.45E-03
35	GO:0009501: amyloplast	7.45E-03
36	GO:0031969: chloroplast membrane	8.25E-03
37	GO:0000783: nuclear telomere cap complex	8.55E-03
38	GO:0008180: COP9 signalosome	9.71E-03
39	GO:0005740: mitochondrial envelope	1.22E-02
40	GO:0012511: monolayer-surrounded lipid storage body	1.35E-02
41	GO:0032040: small-subunit processome	1.49E-02
42	GO:0009508: plastid chromosome	1.63E-02
43	GO:0042651: thylakoid membrane	2.40E-02
44	GO:0015935: small ribosomal subunit	2.57E-02
45	GO:0016021: integral component of membrane	3.87E-02
46	GO:0005623: cell	4.32E-02
47	GO:0000785: chromatin	4.44E-02