co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009106: lipoate metabolic process	0.00E+00
2	GO:0032928: regulation of superoxide anion generation	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0036172: thiamine salvage	0.00E+00
5	GO:0046085: adenosine metabolic process	0.00E+00
6	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
7	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
8	GO:0045740: positive regulation of DNA replication	0.00E+00
9	GO:0009249: protein lipoylation	0.00E+00
10	GO:0015822: ornithine transport	0.00E+00
11	GO:0009583: detection of light stimulus	0.00E+00
12	GO:0010423: negative regulation of brassinosteroid biosynthetic process	0.00E+00
13	GO:0071000: response to magnetism	0.00E+00
14	GO:0045930: negative regulation of mitotic cell cycle	0.00E+00
15	GO:0046460: neutral lipid biosynthetic process	0.00E+00
16	GO:0032350: regulation of hormone metabolic process	0.00E+00
17	GO:0010117: photoprotection	5.28E-05
18	GO:0034971: histone H3-R17 methylation	2.13E-04
19	GO:0033206: meiotic cytokinesis	2.13E-04
20	GO:0072387: flavin adenine dinucleotide metabolic process	2.13E-04
21	GO:0000066: mitochondrial ornithine transport	2.13E-04
22	GO:0034970: histone H3-R2 methylation	2.13E-04
23	GO:0034972: histone H3-R26 methylation	2.13E-04
24	GO:1902265: abscisic acid homeostasis	2.13E-04
25	GO:0010617: circadian regulation of calcium ion oscillation	4.76E-04
26	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	4.76E-04
27	GO:0000002: mitochondrial genome maintenance	4.76E-04
28	GO:0099402: plant organ development	4.76E-04
29	GO:0019441: tryptophan catabolic process to kynurenine	4.76E-04
30	GO:0016122: xanthophyll metabolic process	4.76E-04
31	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	4.76E-04
32	GO:0071712: ER-associated misfolded protein catabolic process	4.76E-04
33	GO:0043039: tRNA aminoacylation	4.76E-04
34	GO:0010343: singlet oxygen-mediated programmed cell death	4.76E-04
35	GO:1901529: positive regulation of anion channel activity	4.76E-04
36	GO:0032259: methylation	6.76E-04
37	GO:0007188: adenylate cyclase-modulating G-protein coupled receptor signaling pathway	7.74E-04
38	GO:1901672: positive regulation of systemic acquired resistance	7.74E-04
39	GO:0043617: cellular response to sucrose starvation	7.74E-04
40	GO:0046417: chorismate metabolic process	7.74E-04
41	GO:0071492: cellular response to UV-A	7.74E-04
42	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	7.74E-04
43	GO:0009432: SOS response	7.74E-04
44	GO:0010476: gibberellin mediated signaling pathway	7.74E-04
45	GO:0010325: raffinose family oligosaccharide biosynthetic process	7.74E-04
46	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	7.74E-04
47	GO:0031022: nuclear migration along microfilament	7.74E-04
48	GO:1902448: positive regulation of shade avoidance	7.74E-04
49	GO:0009653: anatomical structure morphogenesis	7.74E-04
50	GO:0006591: ornithine metabolic process	7.74E-04
51	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	7.74E-04
52	GO:2000377: regulation of reactive oxygen species metabolic process	8.90E-04
53	GO:0009965: leaf morphogenesis	1.01E-03
54	GO:0006306: DNA methylation	1.07E-03
55	GO:1901332: negative regulation of lateral root development	1.10E-03
56	GO:0000730: DNA recombinase assembly	1.10E-03
57	GO:1902476: chloride transmembrane transport	1.10E-03
58	GO:0035067: negative regulation of histone acetylation	1.10E-03
59	GO:0051567: histone H3-K9 methylation	1.47E-03
60	GO:0031507: heterochromatin assembly	1.47E-03
61	GO:0006749: glutathione metabolic process	1.47E-03
62	GO:1902347: response to strigolactone	1.47E-03
63	GO:0009902: chloroplast relocation	1.47E-03
64	GO:0034613: cellular protein localization	1.47E-03
65	GO:0009956: radial pattern formation	1.47E-03
66	GO:0006808: regulation of nitrogen utilization	1.47E-03
67	GO:0071486: cellular response to high light intensity	1.47E-03
68	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.47E-03
69	GO:0009765: photosynthesis, light harvesting	1.47E-03
70	GO:0071249: cellular response to nitrate	1.47E-03
71	GO:0009646: response to absence of light	1.86E-03
72	GO:0046283: anthocyanin-containing compound metabolic process	1.87E-03
73	GO:0009229: thiamine diphosphate biosynthetic process	1.87E-03
74	GO:0009107: lipoate biosynthetic process	1.87E-03
75	GO:0010438: cellular response to sulfur starvation	1.87E-03
76	GO:0009117: nucleotide metabolic process	2.31E-03
77	GO:0006574: valine catabolic process	2.31E-03
78	GO:0000741: karyogamy	2.31E-03
79	GO:0009228: thiamine biosynthetic process	2.31E-03
80	GO:0016458: gene silencing	2.31E-03
81	GO:0006014: D-ribose metabolic process	2.31E-03
82	GO:0010304: PSII associated light-harvesting complex II catabolic process	2.31E-03
83	GO:0016070: RNA metabolic process	2.31E-03
84	GO:0051568: histone H3-K4 methylation	2.31E-03
85	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	2.31E-03
86	GO:0031053: primary miRNA processing	2.31E-03
87	GO:0045962: positive regulation of development, heterochronic	2.31E-03
88	GO:0060918: auxin transport	2.31E-03
89	GO:0042793: transcription from plastid promoter	2.31E-03
90	GO:1901371: regulation of leaf morphogenesis	2.31E-03
91	GO:0034389: lipid particle organization	2.77E-03
92	GO:2000033: regulation of seed dormancy process	2.77E-03
93	GO:0009099: valine biosynthetic process	2.77E-03
94	GO:0009903: chloroplast avoidance movement	2.77E-03
95	GO:0048444: floral organ morphogenesis	2.77E-03
96	GO:0010555: response to mannitol	2.77E-03
97	GO:0010310: regulation of hydrogen peroxide metabolic process	2.77E-03
98	GO:2000067: regulation of root morphogenesis	2.77E-03
99	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.77E-03
100	GO:0010029: regulation of seed germination	3.25E-03
101	GO:0000082: G1/S transition of mitotic cell cycle	3.26E-03
102	GO:0051510: regulation of unidimensional cell growth	3.26E-03
103	GO:0007050: cell cycle arrest	3.26E-03
104	GO:0042148: strand invasion	3.26E-03
105	GO:0006821: chloride transport	3.26E-03
106	GO:0042255: ribosome assembly	3.78E-03
107	GO:0009704: de-etiolation	3.78E-03
108	GO:0045292: mRNA cis splicing, via spliceosome	3.78E-03
109	GO:0010928: regulation of auxin mediated signaling pathway	3.78E-03
110	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	3.78E-03
111	GO:0009787: regulation of abscisic acid-activated signaling pathway	3.78E-03
112	GO:0010439: regulation of glucosinolate biosynthetic process	3.78E-03
113	GO:0009097: isoleucine biosynthetic process	4.33E-03
114	GO:0010100: negative regulation of photomorphogenesis	4.33E-03
115	GO:0006526: arginine biosynthetic process	4.33E-03
116	GO:0022900: electron transport chain	4.33E-03
117	GO:0010212: response to ionizing radiation	4.33E-03
118	GO:0019430: removal of superoxide radicals	4.33E-03
119	GO:0007186: G-protein coupled receptor signaling pathway	4.33E-03
120	GO:0010233: phloem transport	4.33E-03
121	GO:0010218: response to far red light	4.41E-03
122	GO:0009739: response to gibberellin	4.55E-03
123	GO:0048527: lateral root development	4.62E-03
124	GO:0048507: meristem development	4.90E-03
125	GO:0009056: catabolic process	4.90E-03
126	GO:0015780: nucleotide-sugar transport	4.90E-03
127	GO:0098656: anion transmembrane transport	4.90E-03
128	GO:0019432: triglyceride biosynthetic process	4.90E-03
129	GO:0009637: response to blue light	5.07E-03
130	GO:0008356: asymmetric cell division	5.50E-03
131	GO:1900426: positive regulation of defense response to bacterium	5.50E-03
132	GO:0009638: phototropism	5.50E-03
133	GO:0009098: leucine biosynthetic process	5.50E-03
134	GO:0006839: mitochondrial transport	5.77E-03
135	GO:0009688: abscisic acid biosynthetic process	6.12E-03
136	GO:0006325: chromatin organization	6.12E-03
137	GO:0009744: response to sucrose	6.53E-03
138	GO:0009750: response to fructose	6.77E-03
139	GO:0009682: induced systemic resistance	6.77E-03
140	GO:0009073: aromatic amino acid family biosynthetic process	6.77E-03
141	GO:0006312: mitotic recombination	7.44E-03
142	GO:0010152: pollen maturation	7.44E-03
143	GO:0010102: lateral root morphogenesis	8.13E-03
144	GO:0009785: blue light signaling pathway	8.13E-03
145	GO:2000028: regulation of photoperiodism, flowering	8.13E-03
146	GO:0010075: regulation of meristem growth	8.13E-03
147	GO:0030048: actin filament-based movement	8.13E-03
148	GO:0048366: leaf development	8.46E-03
149	GO:0009737: response to abscisic acid	8.56E-03
150	GO:0080188: RNA-directed DNA methylation	9.58E-03
151	GO:0009909: regulation of flower development	9.75E-03
152	GO:0034976: response to endoplasmic reticulum stress	1.03E-02
153	GO:0006071: glycerol metabolic process	1.03E-02
154	GO:0010187: negative regulation of seed germination	1.11E-02
155	GO:0009863: salicylic acid mediated signaling pathway	1.11E-02
156	GO:0016569: covalent chromatin modification	1.18E-02
157	GO:0016575: histone deacetylation	1.19E-02
158	GO:0006418: tRNA aminoacylation for protein translation	1.19E-02
159	GO:0016226: iron-sulfur cluster assembly	1.36E-02
160	GO:0009625: response to insect	1.45E-02
161	GO:0006281: DNA repair	1.48E-02
162	GO:0048443: stamen development	1.53E-02
163	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.62E-02
164	GO:0080022: primary root development	1.72E-02
165	GO:0010051: xylem and phloem pattern formation	1.72E-02
166	GO:0010087: phloem or xylem histogenesis	1.72E-02
167	GO:0010118: stomatal movement	1.72E-02
168	GO:0010197: polar nucleus fusion	1.81E-02
169	GO:0006342: chromatin silencing	1.81E-02
170	GO:0009958: positive gravitropism	1.81E-02
171	GO:0006520: cellular amino acid metabolic process	1.81E-02
172	GO:0042752: regulation of circadian rhythm	1.91E-02
173	GO:0009749: response to glucose	2.00E-02
174	GO:0055072: iron ion homeostasis	2.00E-02
175	GO:0009791: post-embryonic development	2.00E-02
176	GO:0007623: circadian rhythm	2.18E-02
177	GO:0032502: developmental process	2.20E-02
178	GO:0007264: small GTPase mediated signal transduction	2.20E-02
179	GO:0031047: gene silencing by RNA	2.20E-02
180	GO:0010090: trichome morphogenesis	2.31E-02
181	GO:0006310: DNA recombination	2.41E-02
182	GO:0006351: transcription, DNA-templated	2.58E-02
183	GO:0016579: protein deubiquitination	2.62E-02
184	GO:0016126: sterol biosynthetic process	2.73E-02
185	GO:0018298: protein-chromophore linkage	3.30E-02
186	GO:0009658: chloroplast organization	3.37E-02
187	GO:0010311: lateral root formation	3.42E-02
188	GO:0000160: phosphorelay signal transduction system	3.42E-02
189	GO:0006499: N-terminal protein myristoylation	3.54E-02
190	GO:0009407: toxin catabolic process	3.54E-02
191	GO:0006970: response to osmotic stress	3.63E-02
192	GO:0009867: jasmonic acid mediated signaling pathway	3.91E-02
193	GO:0006897: endocytosis	4.41E-02
194	GO:0044550: secondary metabolite biosynthetic process	4.53E-02
195	GO:0009640: photomorphogenesis	4.68E-02
196	GO:0010114: response to red light	4.68E-02
197	GO:0009644: response to high light intensity	4.94E-02
198	GO:0008643: carbohydrate transport	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0008170: N-methyltransferase activity	0.00E+00
2	GO:0004147: dihydrolipoamide branched chain acyltransferase activity	0.00E+00
3	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
4	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
5	GO:0043754: dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity	0.00E+00
6	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
7	GO:0009008: DNA-methyltransferase activity	0.00E+00
8	GO:0004585: ornithine carbamoyltransferase activity	0.00E+00
9	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
10	GO:0003826: alpha-ketoacid dehydrogenase activity	0.00E+00
11	GO:0008168: methyltransferase activity	2.72E-05
12	GO:0004831: tyrosine-tRNA ligase activity	2.13E-04
13	GO:0004061: arylformamidase activity	4.76E-04
14	GO:0004563: beta-N-acetylhexosaminidase activity	4.76E-04
15	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.76E-04
16	GO:0016743: carboxyl- or carbamoyltransferase activity	4.76E-04
17	GO:0035241: protein-arginine omega-N monomethyltransferase activity	4.76E-04
18	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	4.76E-04
19	GO:0017118: lipoyltransferase activity	4.76E-04
20	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	4.76E-04
21	GO:0010331: gibberellin binding	4.76E-04
22	GO:0044390: ubiquitin-like protein conjugating enzyme binding	4.76E-04
23	GO:0016415: octanoyltransferase activity	4.76E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	4.76E-04
25	GO:0004106: chorismate mutase activity	4.76E-04
26	GO:0000064: L-ornithine transmembrane transporter activity	4.76E-04
27	GO:0015929: hexosaminidase activity	4.76E-04
28	GO:0019003: GDP binding	7.74E-04
29	GO:0008649: rRNA methyltransferase activity	7.74E-04
30	GO:0031683: G-protein beta/gamma-subunit complex binding	7.74E-04
31	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	7.74E-04
32	GO:0001664: G-protein coupled receptor binding	7.74E-04
33	GO:0008469: histone-arginine N-methyltransferase activity	7.74E-04
34	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	7.74E-04
35	GO:0004848: ureidoglycolate hydrolase activity	7.74E-04
36	GO:0052656: L-isoleucine transaminase activity	1.10E-03
37	GO:0000339: RNA cap binding	1.10E-03
38	GO:0009882: blue light photoreceptor activity	1.10E-03
39	GO:0052654: L-leucine transaminase activity	1.10E-03
40	GO:0052655: L-valine transaminase activity	1.10E-03
41	GO:0000254: C-4 methylsterol oxidase activity	1.10E-03
42	GO:0035529: NADH pyrophosphatase activity	1.10E-03
43	GO:0005253: anion channel activity	1.47E-03
44	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.47E-03
45	GO:0005319: lipid transporter activity	1.47E-03
46	GO:0010011: auxin binding	1.47E-03
47	GO:0004084: branched-chain-amino-acid transaminase activity	1.47E-03
48	GO:0009044: xylan 1,4-beta-xylosidase activity	1.47E-03
49	GO:0008080: N-acetyltransferase activity	1.73E-03
50	GO:0016407: acetyltransferase activity	1.87E-03
51	GO:0004784: superoxide dismutase activity	2.31E-03
52	GO:0005247: voltage-gated chloride channel activity	2.31E-03
53	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	2.31E-03
54	GO:0004747: ribokinase activity	2.77E-03
55	GO:0004144: diacylglycerol O-acyltransferase activity	2.77E-03
56	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.77E-03
57	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.77E-03
58	GO:0000150: recombinase activity	3.26E-03
59	GO:0005338: nucleotide-sugar transmembrane transporter activity	3.26E-03
60	GO:0004525: ribonuclease III activity	3.78E-03
61	GO:0004520: endodeoxyribonuclease activity	3.78E-03
62	GO:0035064: methylated histone binding	3.78E-03
63	GO:0000400: four-way junction DNA binding	3.78E-03
64	GO:0071949: FAD binding	4.90E-03
65	GO:0000989: transcription factor activity, transcription factor binding	4.90E-03
66	GO:0001055: RNA polymerase II activity	5.50E-03
67	GO:0008047: enzyme activator activity	6.12E-03
68	GO:0004864: protein phosphatase inhibitor activity	6.12E-03
69	GO:0001054: RNA polymerase I activity	6.77E-03
70	GO:0004860: protein kinase inhibitor activity	6.77E-03
71	GO:0001056: RNA polymerase III activity	7.44E-03
72	GO:0000976: transcription regulatory region sequence-specific DNA binding	7.44E-03
73	GO:0003824: catalytic activity	8.04E-03
74	GO:0005315: inorganic phosphate transmembrane transporter activity	8.13E-03
75	GO:0008131: primary amine oxidase activity	8.84E-03
76	GO:0005515: protein binding	9.14E-03
77	GO:0042803: protein homodimerization activity	1.21E-02
78	GO:0004176: ATP-dependent peptidase activity	1.27E-02
79	GO:0033612: receptor serine/threonine kinase binding	1.27E-02
80	GO:0035251: UDP-glucosyltransferase activity	1.27E-02
81	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.27E-02
82	GO:0008094: DNA-dependent ATPase activity	1.27E-02
83	GO:0004386: helicase activity	1.37E-02
84	GO:0003727: single-stranded RNA binding	1.53E-02
85	GO:0008514: organic anion transmembrane transporter activity	1.53E-02
86	GO:0003756: protein disulfide isomerase activity	1.53E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	1.62E-02
88	GO:0004872: receptor activity	2.00E-02
89	GO:0004843: thiol-dependent ubiquitin-specific protease activity	2.10E-02
90	GO:0004518: nuclease activity	2.20E-02
91	GO:0000156: phosphorelay response regulator activity	2.31E-02
92	GO:0008237: metallopeptidase activity	2.52E-02
93	GO:0016597: amino acid binding	2.62E-02
94	GO:0016168: chlorophyll binding	2.84E-02
95	GO:0008375: acetylglucosaminyltransferase activity	2.95E-02
96	GO:0004806: triglyceride lipase activity	3.07E-02
97	GO:0046982: protein heterodimerization activity	3.31E-02
98	GO:0005096: GTPase activator activity	3.42E-02
99	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	3.54E-02
100	GO:0004222: metalloendopeptidase activity	3.54E-02
101	GO:0003697: single-stranded DNA binding	3.91E-02
102	GO:0004712: protein serine/threonine/tyrosine kinase activity	4.16E-02
103	GO:0003723: RNA binding	4.29E-02
104	GO:0051539: 4 iron, 4 sulfur cluster binding	4.29E-02
105	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.30E-02
106	GO:0004364: glutathione transferase activity	4.55E-02
107	GO:0004185: serine-type carboxypeptidase activity	4.68E-02
108	GO:0051537: 2 iron, 2 sulfur cluster binding	4.94E-02
109	GO:0035091: phosphatidylinositol binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0055037: recycling endosome	0.00E+00
3	GO:0005845: mRNA cap binding complex	2.13E-04
4	GO:0043190: ATP-binding cassette (ABC) transporter complex	2.13E-04
5	GO:0005846: nuclear cap binding complex	4.76E-04
6	GO:0016605: PML body	7.74E-04
7	GO:0000419: DNA-directed RNA polymerase V complex	8.05E-04
8	GO:0042646: plastid nucleoid	1.10E-03
9	GO:0036513: Derlin-1 retrotranslocation complex	1.10E-03
10	GO:0009517: PSII associated light-harvesting complex II	1.47E-03
11	GO:0034707: chloride channel complex	2.31E-03
12	GO:0030140: trans-Golgi network transport vesicle	2.31E-03
13	GO:0009295: nucleoid	2.74E-03
14	GO:0005811: lipid particle	4.33E-03
15	GO:0005677: chromatin silencing complex	4.33E-03
16	GO:0042644: chloroplast nucleoid	4.90E-03
17	GO:0009507: chloroplast	5.13E-03
18	GO:0016604: nuclear body	5.50E-03
19	GO:0009508: plastid chromosome	8.13E-03
20	GO:0005578: proteinaceous extracellular matrix	8.13E-03
21	GO:0005769: early endosome	1.03E-02
22	GO:0015935: small ribosomal subunit	1.27E-02
23	GO:0005743: mitochondrial inner membrane	1.35E-02
24	GO:0005654: nucleoplasm	1.53E-02
25	GO:0005770: late endosome	1.81E-02
26	GO:0009523: photosystem II	2.00E-02
27	GO:0000785: chromatin	2.20E-02
28	GO:0009536: plastid	3.11E-02
29	GO:0009707: chloroplast outer membrane	3.30E-02
30	GO:0005783: endoplasmic reticulum	3.44E-02
31	GO:0005819: spindle	4.16E-02
32	GO:0031969: chloroplast membrane	4.17E-02
33	GO:0005789: endoplasmic reticulum membrane	4.28E-02