co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25375

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080005: photosystem stoichiometry adjustment	3.97E-08
2	GO:0010362: negative regulation of anion channel activity by blue light	2.30E-05
3	GO:0071461: cellular response to redox state	2.30E-05
4	GO:0016226: iron-sulfur cluster assembly	5.66E-05
5	GO:0010343: singlet oxygen-mediated programmed cell death	5.89E-05
6	GO:0048255: mRNA stabilization	5.89E-05
7	GO:0016117: carotenoid biosynthetic process	7.58E-05
8	GO:0006013: mannose metabolic process	1.04E-04
9	GO:0009150: purine ribonucleotide metabolic process	1.04E-04
10	GO:0006696: ergosterol biosynthetic process	1.04E-04
11	GO:0033014: tetrapyrrole biosynthetic process	1.55E-04
12	GO:2001141: regulation of RNA biosynthetic process	1.55E-04
13	GO:0009765: photosynthesis, light harvesting	2.12E-04
14	GO:0009902: chloroplast relocation	2.12E-04
15	GO:0016120: carotene biosynthetic process	2.73E-04
16	GO:0000304: response to singlet oxygen	2.73E-04
17	GO:0016123: xanthophyll biosynthetic process	2.73E-04
18	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.37E-04
19	GO:0048564: photosystem I assembly	5.46E-04
20	GO:0009704: de-etiolation	5.46E-04
21	GO:0071482: cellular response to light stimulus	6.21E-04
22	GO:0006783: heme biosynthetic process	6.98E-04
23	GO:0009638: phototropism	7.77E-04
24	GO:0006779: porphyrin-containing compound biosynthetic process	7.77E-04
25	GO:0045036: protein targeting to chloroplast	8.59E-04
26	GO:0006352: DNA-templated transcription, initiation	9.42E-04
27	GO:0006790: sulfur compound metabolic process	1.03E-03
28	GO:0009658: chloroplast organization	1.78E-03
29	GO:0010051: xylem and phloem pattern formation	2.24E-03
30	GO:0010087: phloem or xylem histogenesis	2.24E-03
31	GO:0010118: stomatal movement	2.24E-03
32	GO:0046777: protein autophosphorylation	2.34E-03
33	GO:0009791: post-embryonic development	2.60E-03
34	GO:0009816: defense response to bacterium, incompatible interaction	3.62E-03
35	GO:0030244: cellulose biosynthetic process	4.17E-03
36	GO:0018298: protein-chromophore linkage	4.17E-03
37	GO:0000160: phosphorelay signal transduction system	4.32E-03
38	GO:0006811: ion transport	4.46E-03
39	GO:0009637: response to blue light	4.90E-03
40	GO:0006897: endocytosis	5.52E-03
41	GO:0009965: leaf morphogenesis	6.33E-03
42	GO:0009664: plant-type cell wall organization	6.83E-03
43	GO:0006417: regulation of translation	7.70E-03
44	GO:0007623: circadian rhythm	1.35E-02
45	GO:0009451: RNA modification	1.37E-02
46	GO:0010228: vegetative to reproductive phase transition of meristem	1.39E-02
47	GO:0010468: regulation of gene expression	1.53E-02
48	GO:0009826: unidimensional cell growth	1.79E-02
49	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.19E-02
50	GO:0006468: protein phosphorylation	2.31E-02
51	GO:0016310: phosphorylation	2.83E-02
52	GO:0009408: response to heat	2.83E-02
53	GO:0006508: proteolysis	3.54E-02
54	GO:0009735: response to cytokinin	3.99E-02
55	GO:0035556: intracellular signal transduction	4.42E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0046905: phytoene synthase activity	0.00E+00
3	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
4	GO:0004325: ferrochelatase activity	2.30E-05
5	GO:0051996: squalene synthase activity	2.30E-05
6	GO:0030941: chloroplast targeting sequence binding	2.30E-05
7	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	5.89E-05
8	GO:0004047: aminomethyltransferase activity	5.89E-05
9	GO:0004180: carboxypeptidase activity	1.04E-04
10	GO:0032947: protein complex scaffold	1.04E-04
11	GO:0009882: blue light photoreceptor activity	1.55E-04
12	GO:0047627: adenylylsulfatase activity	1.55E-04
13	GO:0016987: sigma factor activity	2.12E-04
14	GO:0001053: plastid sigma factor activity	2.12E-04
15	GO:0051861: glycolipid binding	2.12E-04
16	GO:0004559: alpha-mannosidase activity	4.04E-04
17	GO:0071949: FAD binding	6.98E-04
18	GO:0004713: protein tyrosine kinase activity	8.59E-04
19	GO:0000155: phosphorelay sensor kinase activity	1.12E-03
20	GO:0051536: iron-sulfur cluster binding	1.49E-03
21	GO:0004176: ATP-dependent peptidase activity	1.70E-03
22	GO:0010181: FMN binding	2.48E-03
23	GO:0008237: metallopeptidase activity	3.22E-03
24	GO:0008236: serine-type peptidase activity	4.03E-03
25	GO:0005096: GTPase activator activity	4.32E-03
26	GO:0004222: metalloendopeptidase activity	4.46E-03
27	GO:0016301: kinase activity	4.89E-03
28	GO:0035091: phosphatidylinositol binding	6.16E-03
29	GO:0005198: structural molecule activity	6.33E-03
30	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	7.18E-03
31	GO:0030246: carbohydrate binding	7.62E-03
32	GO:0005524: ATP binding	1.05E-02
33	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.09E-02
34	GO:0016491: oxidoreductase activity	1.52E-02
35	GO:0042802: identical protein binding	1.60E-02
36	GO:0004519: endonuclease activity	3.00E-02
37	GO:0016887: ATPase activity	3.86E-02
38	GO:0016757: transferase activity, transferring glycosyl groups	3.92E-02
39	GO:0016740: transferase activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.52E-10
2	GO:0031969: chloroplast membrane	3.13E-07
3	GO:0055035: plastid thylakoid membrane	2.73E-04
4	GO:0030140: trans-Golgi network transport vesicle	3.37E-04
5	GO:0031359: integral component of chloroplast outer membrane	4.74E-04
6	GO:0046930: pore complex	6.21E-04
7	GO:0042651: thylakoid membrane	1.59E-03
8	GO:0009707: chloroplast outer membrane	4.17E-03
9	GO:0005802: trans-Golgi network	9.08E-03
10	GO:0005768: endosome	1.03E-02
11	GO:0010287: plastoglobule	1.03E-02
12	GO:0009941: chloroplast envelope	1.23E-02
13	GO:0009536: plastid	1.41E-02
14	GO:0009505: plant-type cell wall	1.44E-02
15	GO:0005773: vacuole	1.44E-02
16	GO:0005794: Golgi apparatus	1.97E-02
17	GO:0009535: chloroplast thylakoid membrane	2.58E-02
18	GO:0005743: mitochondrial inner membrane	2.68E-02
19	GO:0005777: peroxisome	4.69E-02