co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G24040

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0036172: thiamine salvage	0.00E+00
2	GO:0048856: anatomical structure development	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0016576: histone dephosphorylation	0.00E+00
6	GO:0046085: adenosine metabolic process	0.00E+00
7	GO:0006044: N-acetylglucosamine metabolic process	0.00E+00
8	GO:0006437: tyrosyl-tRNA aminoacylation	0.00E+00
9	GO:0045740: positive regulation of DNA replication	0.00E+00
10	GO:0009249: protein lipoylation	0.00E+00
11	GO:0015822: ornithine transport	0.00E+00
12	GO:0009583: detection of light stimulus	0.00E+00
13	GO:0009106: lipoate metabolic process	0.00E+00
14	GO:0042793: transcription from plastid promoter	5.54E-05
15	GO:0034971: histone H3-R17 methylation	1.73E-04
16	GO:0033206: meiotic cytokinesis	1.73E-04
17	GO:0072387: flavin adenine dinucleotide metabolic process	1.73E-04
18	GO:0048438: floral whorl development	1.73E-04
19	GO:0000066: mitochondrial ornithine transport	1.73E-04
20	GO:0034970: histone H3-R2 methylation	1.73E-04
21	GO:0016031: tRNA import into mitochondrion	1.73E-04
22	GO:0034972: histone H3-R26 methylation	1.73E-04
23	GO:0010617: circadian regulation of calcium ion oscillation	3.92E-04
24	GO:0080064: 4,4-dimethyl-9beta,19-cyclopropylsterol oxidation	3.92E-04
25	GO:0099402: plant organ development	3.92E-04
26	GO:0035335: peptidyl-tyrosine dephosphorylation	3.92E-04
27	GO:0019919: peptidyl-arginine methylation, to asymmetrical-dimethyl arginine	3.92E-04
28	GO:0043039: tRNA aminoacylation	3.92E-04
29	GO:0010343: singlet oxygen-mediated programmed cell death	3.92E-04
30	GO:1901529: positive regulation of anion channel activity	3.92E-04
31	GO:0044419: interspecies interaction between organisms	3.92E-04
32	GO:0006839: mitochondrial transport	5.19E-04
33	GO:1901672: positive regulation of systemic acquired resistance	6.40E-04
34	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	6.40E-04
35	GO:0009150: purine ribonucleotide metabolic process	6.40E-04
36	GO:0071492: cellular response to UV-A	6.40E-04
37	GO:0045739: positive regulation of DNA repair	6.40E-04
38	GO:0010476: gibberellin mediated signaling pathway	6.40E-04
39	GO:0010325: raffinose family oligosaccharide biosynthetic process	6.40E-04
40	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	6.40E-04
41	GO:1902448: positive regulation of shade avoidance	6.40E-04
42	GO:2000377: regulation of reactive oxygen species metabolic process	6.71E-04
43	GO:0033014: tetrapyrrole biosynthetic process	9.13E-04
44	GO:1901332: negative regulation of lateral root development	9.13E-04
45	GO:0009399: nitrogen fixation	9.13E-04
46	GO:0008295: spermidine biosynthetic process	1.21E-03
47	GO:1902347: response to strigolactone	1.21E-03
48	GO:0006542: glutamine biosynthetic process	1.21E-03
49	GO:0006808: regulation of nitrogen utilization	1.21E-03
50	GO:0071486: cellular response to high light intensity	1.21E-03
51	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	1.21E-03
52	GO:0042274: ribosomal small subunit biogenesis	1.21E-03
53	GO:0009765: photosynthesis, light harvesting	1.21E-03
54	GO:0051567: histone H3-K9 methylation	1.21E-03
55	GO:0006544: glycine metabolic process	1.54E-03
56	GO:0010117: photoprotection	1.54E-03
57	GO:0046283: anthocyanin-containing compound metabolic process	1.54E-03
58	GO:0009229: thiamine diphosphate biosynthetic process	1.54E-03
59	GO:0009107: lipoate biosynthetic process	1.54E-03
60	GO:0009228: thiamine biosynthetic process	1.89E-03
61	GO:0060918: auxin transport	1.89E-03
62	GO:0010190: cytochrome b6f complex assembly	1.89E-03
63	GO:0033365: protein localization to organelle	1.89E-03
64	GO:0006574: valine catabolic process	1.89E-03
65	GO:0016458: gene silencing	1.89E-03
66	GO:0006563: L-serine metabolic process	1.89E-03
67	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.89E-03
68	GO:0016070: RNA metabolic process	1.89E-03
69	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.89E-03
70	GO:0031053: primary miRNA processing	1.89E-03
71	GO:0045962: positive regulation of development, heterochronic	1.89E-03
72	GO:1901371: regulation of leaf morphogenesis	1.89E-03
73	GO:0032259: methylation	1.99E-03
74	GO:2000033: regulation of seed dormancy process	2.27E-03
75	GO:0010076: maintenance of floral meristem identity	2.27E-03
76	GO:0048444: floral organ morphogenesis	2.27E-03
77	GO:0010310: regulation of hydrogen peroxide metabolic process	2.27E-03
78	GO:0080036: regulation of cytokinin-activated signaling pathway	2.27E-03
79	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	2.27E-03
80	GO:0034389: lipid particle organization	2.27E-03
81	GO:0006826: iron ion transport	2.67E-03
82	GO:0000082: G1/S transition of mitotic cell cycle	2.67E-03
83	GO:0051510: regulation of unidimensional cell growth	2.67E-03
84	GO:0007050: cell cycle arrest	2.67E-03
85	GO:0010196: nonphotochemical quenching	2.67E-03
86	GO:0009938: negative regulation of gibberellic acid mediated signaling pathway	3.09E-03
87	GO:0009704: de-etiolation	3.09E-03
88	GO:0045292: mRNA cis splicing, via spliceosome	3.09E-03
89	GO:0010218: response to far red light	3.29E-03
90	GO:0019430: removal of superoxide radicals	3.54E-03
91	GO:0006526: arginine biosynthetic process	3.54E-03
92	GO:0032544: plastid translation	3.54E-03
93	GO:0022900: electron transport chain	3.54E-03
94	GO:0010233: phloem transport	3.54E-03
95	GO:0006783: heme biosynthetic process	4.00E-03
96	GO:0009056: catabolic process	4.00E-03
97	GO:0098656: anion transmembrane transport	4.00E-03
98	GO:0019432: triglyceride biosynthetic process	4.00E-03
99	GO:1900426: positive regulation of defense response to bacterium	4.49E-03
100	GO:0009638: phototropism	4.49E-03
101	GO:0006779: porphyrin-containing compound biosynthetic process	4.49E-03
102	GO:0035999: tetrahydrofolate interconversion	4.49E-03
103	GO:1900865: chloroplast RNA modification	4.49E-03
104	GO:0009965: leaf morphogenesis	5.46E-03
105	GO:0010582: floral meristem determinacy	6.06E-03
106	GO:0006790: sulfur compound metabolic process	6.06E-03
107	GO:0010075: regulation of meristem growth	6.61E-03
108	GO:0006094: gluconeogenesis	6.61E-03
109	GO:0010102: lateral root morphogenesis	6.61E-03
110	GO:0009785: blue light signaling pathway	6.61E-03
111	GO:0009266: response to temperature stimulus	7.20E-03
112	GO:0010039: response to iron ion	7.79E-03
113	GO:0006071: glycerol metabolic process	8.41E-03
114	GO:0000162: tryptophan biosynthetic process	8.41E-03
115	GO:0034976: response to endoplasmic reticulum stress	8.41E-03
116	GO:0010187: negative regulation of seed germination	9.03E-03
117	GO:0006289: nucleotide-excision repair	9.03E-03
118	GO:0009863: salicylic acid mediated signaling pathway	9.03E-03
119	GO:0006418: tRNA aminoacylation for protein translation	9.69E-03
120	GO:0006306: DNA methylation	1.03E-02
121	GO:0006730: one-carbon metabolic process	1.10E-02
122	GO:0016226: iron-sulfur cluster assembly	1.10E-02
123	GO:0007005: mitochondrion organization	1.10E-02
124	GO:0055114: oxidation-reduction process	1.19E-02
125	GO:0080022: primary root development	1.39E-02
126	GO:0010051: xylem and phloem pattern formation	1.39E-02
127	GO:0010087: phloem or xylem histogenesis	1.39E-02
128	GO:0010118: stomatal movement	1.39E-02
129	GO:0042752: regulation of circadian rhythm	1.54E-02
130	GO:0009646: response to absence of light	1.54E-02
131	GO:0009851: auxin biosynthetic process	1.62E-02
132	GO:0009451: RNA modification	1.66E-02
133	GO:0009739: response to gibberellin	1.81E-02
134	GO:0016126: sterol biosynthetic process	2.21E-02
135	GO:0010029: regulation of seed germination	2.30E-02
136	GO:0042128: nitrate assimilation	2.39E-02
137	GO:0006950: response to stress	2.48E-02
138	GO:0006810: transport	2.62E-02
139	GO:0018298: protein-chromophore linkage	2.67E-02
140	GO:0010311: lateral root formation	2.77E-02
141	GO:0000160: phosphorelay signal transduction system	2.77E-02
142	GO:0048366: leaf development	2.95E-02
143	GO:0048527: lateral root development	2.96E-02
144	GO:0009910: negative regulation of flower development	2.96E-02
145	GO:0009867: jasmonic acid mediated signaling pathway	3.16E-02
146	GO:0009637: response to blue light	3.16E-02
147	GO:0046777: protein autophosphorylation	3.32E-02
148	GO:0006897: endocytosis	3.58E-02
149	GO:0009640: photomorphogenesis	3.79E-02
150	GO:0010114: response to red light	3.79E-02
151	GO:0009644: response to high light intensity	4.01E-02
152	GO:0000154: rRNA modification	4.12E-02
153	GO:0006260: DNA replication	4.34E-02
154	GO:0000165: MAPK cascade	4.34E-02
155	GO:0042538: hyperosmotic salinity response	4.45E-02
156	GO:0009736: cytokinin-activated signaling pathway	4.68E-02
157	GO:0009809: lignin biosynthetic process	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0030946: protein tyrosine phosphatase activity, metal-dependent	0.00E+00
2	GO:0008841: dihydrofolate synthase activity	0.00E+00
3	GO:0003992: N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity	0.00E+00
4	GO:0008170: N-methyltransferase activity	0.00E+00
5	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
6	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
7	GO:0033819: lipoyl(octanoyl) transferase activity	0.00E+00
8	GO:0009008: DNA-methyltransferase activity	0.00E+00
9	GO:0004343: glucosamine 6-phosphate N-acetyltransferase activity	0.00E+00
10	GO:0004848: ureidoglycolate hydrolase activity	5.37E-06
11	GO:0008168: methyltransferase activity	1.23E-04
12	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.73E-04
13	GO:0004831: tyrosine-tRNA ligase activity	1.73E-04
14	GO:0004325: ferrochelatase activity	1.73E-04
15	GO:0071949: FAD binding	2.02E-04
16	GO:0035241: protein-arginine omega-N monomethyltransferase activity	3.92E-04
17	GO:0016277: [myelin basic protein]-arginine N-methyltransferase activity	3.92E-04
18	GO:0017118: lipoyltransferase activity	3.92E-04
19	GO:0035242: protein-arginine omega-N asymmetric methyltransferase activity	3.92E-04
20	GO:0010331: gibberellin binding	3.92E-04
21	GO:0016415: octanoyltransferase activity	3.92E-04
22	GO:0004766: spermidine synthase activity	3.92E-04
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.92E-04
24	GO:0000064: L-ornithine transmembrane transporter activity	3.92E-04
25	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	3.92E-04
26	GO:0000900: translation repressor activity, nucleic acid binding	6.40E-04
27	GO:0008649: rRNA methyltransferase activity	6.40E-04
28	GO:0017176: phosphatidylinositol N-acetylglucosaminyltransferase activity	6.40E-04
29	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.40E-04
30	GO:0008469: histone-arginine N-methyltransferase activity	6.40E-04
31	GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity	6.40E-04
32	GO:0000339: RNA cap binding	9.13E-04
33	GO:0009882: blue light photoreceptor activity	9.13E-04
34	GO:0047627: adenylylsulfatase activity	9.13E-04
35	GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	9.13E-04
36	GO:0000254: C-4 methylsterol oxidase activity	9.13E-04
37	GO:0004834: tryptophan synthase activity	1.21E-03
38	GO:0005319: lipid transporter activity	1.21E-03
39	GO:0004372: glycine hydroxymethyltransferase activity	1.54E-03
40	GO:0004356: glutamate-ammonia ligase activity	1.54E-03
41	GO:0004784: superoxide dismutase activity	1.89E-03
42	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.89E-03
43	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	2.27E-03
44	GO:0009927: histidine phosphotransfer kinase activity	2.27E-03
45	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	2.27E-03
46	GO:0004144: diacylglycerol O-acyltransferase activity	2.27E-03
47	GO:0016621: cinnamoyl-CoA reductase activity	2.67E-03
48	GO:0000989: transcription factor activity, transcription factor binding	4.00E-03
49	GO:0003824: catalytic activity	4.78E-03
50	GO:0008047: enzyme activator activity	4.99E-03
51	GO:0051287: NAD binding	5.89E-03
52	GO:0016491: oxidoreductase activity	6.57E-03
53	GO:0005315: inorganic phosphate transmembrane transporter activity	6.61E-03
54	GO:0015266: protein channel activity	6.61E-03
55	GO:0003887: DNA-directed DNA polymerase activity	8.41E-03
56	GO:0003723: RNA binding	9.39E-03
57	GO:0043424: protein histidine kinase binding	9.69E-03
58	GO:0004176: ATP-dependent peptidase activity	1.03E-02
59	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.20E-02
60	GO:0003756: protein disulfide isomerase activity	1.24E-02
61	GO:0008514: organic anion transmembrane transporter activity	1.24E-02
62	GO:0030170: pyridoxal phosphate binding	1.30E-02
63	GO:0004812: aminoacyl-tRNA ligase activity	1.32E-02
64	GO:0008080: N-acetyltransferase activity	1.47E-02
65	GO:0016787: hydrolase activity	1.53E-02
66	GO:0050662: coenzyme binding	1.54E-02
67	GO:0048038: quinone binding	1.70E-02
68	GO:0004518: nuclease activity	1.78E-02
69	GO:0008237: metallopeptidase activity	2.04E-02
70	GO:0042802: identical protein binding	2.06E-02
71	GO:0016168: chlorophyll binding	2.30E-02
72	GO:0008375: acetylglucosaminyltransferase activity	2.39E-02
73	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.67E-02
74	GO:0005096: GTPase activator activity	2.77E-02
75	GO:0004222: metalloendopeptidase activity	2.87E-02
76	GO:0004497: monooxygenase activity	3.11E-02
77	GO:0005507: copper ion binding	3.27E-02
78	GO:0004712: protein serine/threonine/tyrosine kinase activity	3.37E-02
79	GO:0050661: NADP binding	3.47E-02
80	GO:0042803: protein homodimerization activity	3.89E-02
81	GO:0051537: 2 iron, 2 sulfur cluster binding	4.01E-02
82	GO:0043621: protein self-association	4.01E-02
83	GO:0035091: phosphatidylinositol binding	4.01E-02
84	GO:0005515: protein binding	4.86E-02
85	GO:0004519: endonuclease activity	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.28E-13
2	GO:0009536: plastid	1.57E-05
3	GO:0043190: ATP-binding cassette (ABC) transporter complex	1.73E-04
4	GO:0005845: mRNA cap binding complex	1.73E-04
5	GO:0009295: nucleoid	1.91E-04
6	GO:0005846: nuclear cap binding complex	3.92E-04
7	GO:0009508: plastid chromosome	4.32E-04
8	GO:0009535: chloroplast thylakoid membrane	4.84E-04
9	GO:0016605: PML body	6.40E-04
10	GO:0042646: plastid nucleoid	9.13E-04
11	GO:0055035: plastid thylakoid membrane	1.54E-03
12	GO:0030140: trans-Golgi network transport vesicle	1.89E-03
13	GO:0005743: mitochondrial inner membrane	1.91E-03
14	GO:0009840: chloroplastic endopeptidase Clp complex	2.27E-03
15	GO:0005811: lipid particle	3.54E-03
16	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.00E-03
17	GO:0042644: chloroplast nucleoid	4.00E-03
18	GO:0016604: nuclear body	4.49E-03
19	GO:0009570: chloroplast stroma	6.26E-03
20	GO:0009941: chloroplast envelope	8.09E-03
21	GO:0009706: chloroplast inner membrane	9.33E-03
22	GO:0042651: thylakoid membrane	9.69E-03
23	GO:0015935: small ribosomal subunit	1.03E-02
24	GO:0005654: nucleoplasm	1.14E-02
25	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.24E-02
26	GO:0009523: photosystem II	1.62E-02
27	GO:0009707: chloroplast outer membrane	2.67E-02
28	GO:0031969: chloroplast membrane	3.11E-02
29	GO:0005829: cytosol	3.99E-02
30	GO:0031966: mitochondrial membrane	4.45E-02