co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G23750

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009715: chalcone biosynthetic process	0.00E+00
2	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
3	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
4	GO:0006114: glycerol biosynthetic process	0.00E+00
5	GO:0042493: response to drug	0.00E+00
6	GO:0015979: photosynthesis	1.52E-13
7	GO:0010027: thylakoid membrane organization	1.62E-08
8	GO:0018298: protein-chromophore linkage	1.38E-06
9	GO:0010196: nonphotochemical quenching	1.97E-06
10	GO:0090391: granum assembly	7.24E-06
11	GO:0009765: photosynthesis, light harvesting	3.05E-05
12	GO:0009768: photosynthesis, light harvesting in photosystem I	5.58E-05
13	GO:0042549: photosystem II stabilization	7.23E-05
14	GO:0000476: maturation of 4.5S rRNA	2.04E-04
15	GO:0000967: rRNA 5'-end processing	2.04E-04
16	GO:0043953: protein transport by the Tat complex	2.04E-04
17	GO:1904966: positive regulation of vitamin E biosynthetic process	2.04E-04
18	GO:0000481: maturation of 5S rRNA	2.04E-04
19	GO:1904964: positive regulation of phytol biosynthetic process	2.04E-04
20	GO:0065002: intracellular protein transmembrane transport	2.04E-04
21	GO:0043007: maintenance of rDNA	2.04E-04
22	GO:0034337: RNA folding	2.04E-04
23	GO:0010493: Lewis a epitope biosynthetic process	2.04E-04
24	GO:0010206: photosystem II repair	2.57E-04
25	GO:0010205: photoinhibition	3.06E-04
26	GO:0015995: chlorophyll biosynthetic process	3.81E-04
27	GO:0016311: dephosphorylation	4.07E-04
28	GO:0019684: photosynthesis, light reaction	4.16E-04
29	GO:1902326: positive regulation of chlorophyll biosynthetic process	4.57E-04
30	GO:0035304: regulation of protein dephosphorylation	4.57E-04
31	GO:0009629: response to gravity	4.57E-04
32	GO:0006432: phenylalanyl-tRNA aminoacylation	4.57E-04
33	GO:0018026: peptidyl-lysine monomethylation	4.57E-04
34	GO:0006729: tetrahydrobiopterin biosynthetic process	4.57E-04
35	GO:0080181: lateral root branching	4.57E-04
36	GO:0034470: ncRNA processing	4.57E-04
37	GO:0010020: chloroplast fission	6.10E-04
38	GO:0010207: photosystem II assembly	6.10E-04
39	GO:0071492: cellular response to UV-A	7.44E-04
40	GO:0005977: glycogen metabolic process	7.44E-04
41	GO:0061077: chaperone-mediated protein folding	1.01E-03
42	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.06E-03
43	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.06E-03
44	GO:0009650: UV protection	1.06E-03
45	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.06E-03
46	GO:0006020: inositol metabolic process	1.06E-03
47	GO:0071484: cellular response to light intensity	1.06E-03
48	GO:0009658: chloroplast organization	1.21E-03
49	GO:0022622: root system development	1.41E-03
50	GO:0006552: leucine catabolic process	1.41E-03
51	GO:0006021: inositol biosynthetic process	1.41E-03
52	GO:0010021: amylopectin biosynthetic process	1.41E-03
53	GO:0015976: carbon utilization	1.41E-03
54	GO:0071486: cellular response to high light intensity	1.41E-03
55	GO:0006109: regulation of carbohydrate metabolic process	1.41E-03
56	GO:0015994: chlorophyll metabolic process	1.41E-03
57	GO:0006656: phosphatidylcholine biosynthetic process	1.80E-03
58	GO:0016558: protein import into peroxisome matrix	1.80E-03
59	GO:0006564: L-serine biosynthetic process	1.80E-03
60	GO:0010236: plastoquinone biosynthetic process	1.80E-03
61	GO:0042793: transcription from plastid promoter	2.21E-03
62	GO:0046855: inositol phosphate dephosphorylation	2.21E-03
63	GO:0010189: vitamin E biosynthetic process	2.66E-03
64	GO:0009769: photosynthesis, light harvesting in photosystem II	3.13E-03
65	GO:1900057: positive regulation of leaf senescence	3.13E-03
66	GO:0009645: response to low light intensity stimulus	3.13E-03
67	GO:0022904: respiratory electron transport chain	3.13E-03
68	GO:0032880: regulation of protein localization	3.13E-03
69	GO:0009642: response to light intensity	3.63E-03
70	GO:0030091: protein repair	3.63E-03
71	GO:0032508: DNA duplex unwinding	3.63E-03
72	GO:0031540: regulation of anthocyanin biosynthetic process	3.63E-03
73	GO:0000105: histidine biosynthetic process	3.63E-03
74	GO:0009231: riboflavin biosynthetic process	3.63E-03
75	GO:0016559: peroxisome fission	3.63E-03
76	GO:0048564: photosystem I assembly	3.63E-03
77	GO:0009813: flavonoid biosynthetic process	3.95E-03
78	GO:0010218: response to far red light	4.15E-03
79	GO:0017004: cytochrome complex assembly	4.15E-03
80	GO:0009637: response to blue light	4.76E-03
81	GO:0006779: porphyrin-containing compound biosynthetic process	5.27E-03
82	GO:0006782: protoporphyrinogen IX biosynthetic process	5.86E-03
83	GO:0006949: syncytium formation	5.86E-03
84	GO:0010114: response to red light	6.13E-03
85	GO:0006913: nucleocytoplasmic transport	6.48E-03
86	GO:0009773: photosynthetic electron transport in photosystem I	6.48E-03
87	GO:0009089: lysine biosynthetic process via diaminopimelate	6.48E-03
88	GO:0009073: aromatic amino acid family biosynthetic process	6.48E-03
89	GO:0043085: positive regulation of catalytic activity	6.48E-03
90	GO:0018119: peptidyl-cysteine S-nitrosylation	6.48E-03
91	GO:0009644: response to high light intensity	6.63E-03
92	GO:0005983: starch catabolic process	7.12E-03
93	GO:0006790: sulfur compound metabolic process	7.12E-03
94	GO:2000012: regulation of auxin polar transport	7.78E-03
95	GO:0006006: glucose metabolic process	7.78E-03
96	GO:0019253: reductive pentose-phosphate cycle	8.47E-03
97	GO:0010224: response to UV-B	8.56E-03
98	GO:0019853: L-ascorbic acid biosynthetic process	9.17E-03
99	GO:0010030: positive regulation of seed germination	9.17E-03
100	GO:0046854: phosphatidylinositol phosphorylation	9.17E-03
101	GO:0006096: glycolytic process	9.79E-03
102	GO:0006863: purine nucleobase transport	9.90E-03
103	GO:0000162: tryptophan biosynthetic process	9.90E-03
104	GO:0045454: cell redox homeostasis	1.05E-02
105	GO:0019953: sexual reproduction	1.14E-02
106	GO:0006810: transport	1.19E-02
107	GO:0048278: vesicle docking	1.22E-02
108	GO:0048511: rhythmic process	1.22E-02
109	GO:0019915: lipid storage	1.22E-02
110	GO:0009269: response to desiccation	1.22E-02
111	GO:0032259: methylation	1.30E-02
112	GO:0006281: DNA repair	1.37E-02
113	GO:0009411: response to UV	1.38E-02
114	GO:0071369: cellular response to ethylene stimulus	1.38E-02
115	GO:0006012: galactose metabolic process	1.38E-02
116	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.38E-02
117	GO:0009561: megagametogenesis	1.47E-02
118	GO:0008284: positive regulation of cell proliferation	1.55E-02
119	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	1.55E-02
120	GO:0042631: cellular response to water deprivation	1.64E-02
121	GO:0009790: embryo development	1.73E-02
122	GO:0009958: positive gravitropism	1.73E-02
123	GO:0006662: glycerol ether metabolic process	1.73E-02
124	GO:0048868: pollen tube development	1.73E-02
125	GO:0061025: membrane fusion	1.82E-02
126	GO:0042752: regulation of circadian rhythm	1.82E-02
127	GO:0009646: response to absence of light	1.82E-02
128	GO:0019252: starch biosynthetic process	1.92E-02
129	GO:0071554: cell wall organization or biogenesis	2.01E-02
130	GO:0010193: response to ozone	2.01E-02
131	GO:0006635: fatty acid beta-oxidation	2.01E-02
132	GO:0009451: RNA modification	2.09E-02
133	GO:0010583: response to cyclopentenone	2.11E-02
134	GO:0009828: plant-type cell wall loosening	2.30E-02
135	GO:0009567: double fertilization forming a zygote and endosperm	2.30E-02
136	GO:0055114: oxidation-reduction process	2.37E-02
137	GO:0009416: response to light stimulus	2.82E-02
138	GO:0006906: vesicle fusion	2.83E-02
139	GO:0009627: systemic acquired resistance	2.83E-02
140	GO:0009611: response to wounding	2.90E-02
141	GO:0009817: defense response to fungus, incompatible interaction	3.16E-02
142	GO:0006499: N-terminal protein myristoylation	3.38E-02
143	GO:0048527: lateral root development	3.50E-02
144	GO:0007568: aging	3.50E-02
145	GO:0009867: jasmonic acid mediated signaling pathway	3.74E-02
146	GO:0034599: cellular response to oxidative stress	3.86E-02
147	GO:0006887: exocytosis	4.22E-02
148	GO:0006631: fatty acid metabolic process	4.22E-02
149	GO:0009926: auxin polar transport	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
2	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
3	GO:0042623: ATPase activity, coupled	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0048039: ubiquinone binding	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
8	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
9	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
10	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
11	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
12	GO:0016168: chlorophyll binding	7.79E-07
13	GO:0031409: pigment binding	4.03E-05
14	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.13E-04
15	GO:0046920: alpha-(1->3)-fucosyltransferase activity	2.04E-04
16	GO:0050308: sugar-phosphatase activity	2.04E-04
17	GO:0010242: oxygen evolving activity	2.04E-04
18	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	2.04E-04
19	GO:0019203: carbohydrate phosphatase activity	2.04E-04
20	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	2.04E-04
21	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	2.04E-04
22	GO:0019843: rRNA binding	3.83E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	4.57E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	4.57E-04
25	GO:0004826: phenylalanine-tRNA ligase activity	4.57E-04
26	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	4.57E-04
27	GO:0016630: protochlorophyllide reductase activity	4.57E-04
28	GO:0019172: glyoxalase III activity	4.57E-04
29	GO:0019156: isoamylase activity	4.57E-04
30	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	4.57E-04
31	GO:0000234: phosphoethanolamine N-methyltransferase activity	4.57E-04
32	GO:0047746: chlorophyllase activity	4.57E-04
33	GO:0009977: proton motive force dependent protein transmembrane transporter activity	4.57E-04
34	GO:0004617: phosphoglycerate dehydrogenase activity	4.57E-04
35	GO:0052832: inositol monophosphate 3-phosphatase activity	4.57E-04
36	GO:0003913: DNA photolyase activity	7.44E-04
37	GO:0005504: fatty acid binding	7.44E-04
38	GO:0004751: ribose-5-phosphate isomerase activity	7.44E-04
39	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	7.44E-04
40	GO:0005528: FK506 binding	8.38E-04
41	GO:0042802: identical protein binding	9.04E-04
42	GO:0016851: magnesium chelatase activity	1.06E-03
43	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	1.06E-03
44	GO:0022891: substrate-specific transmembrane transporter activity	1.20E-03
45	GO:0043495: protein anchor	1.41E-03
46	GO:0045430: chalcone isomerase activity	1.41E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	1.41E-03
48	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.41E-03
49	GO:0080032: methyl jasmonate esterase activity	1.41E-03
50	GO:0003959: NADPH dehydrogenase activity	1.80E-03
51	GO:0042578: phosphoric ester hydrolase activity	2.21E-03
52	GO:0004556: alpha-amylase activity	2.21E-03
53	GO:0004462: lactoylglutathione lyase activity	2.21E-03
54	GO:2001070: starch binding	2.21E-03
55	GO:0080030: methyl indole-3-acetate esterase activity	2.21E-03
56	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.66E-03
57	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.66E-03
58	GO:0009881: photoreceptor activity	3.13E-03
59	GO:0019899: enzyme binding	3.13E-03
60	GO:0009055: electron carrier activity	3.38E-03
61	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	3.58E-03
62	GO:0004033: aldo-keto reductase (NADP) activity	3.63E-03
63	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	4.70E-03
64	GO:0008417: fucosyltransferase activity	4.70E-03
65	GO:0003993: acid phosphatase activity	4.98E-03
66	GO:0008047: enzyme activator activity	5.86E-03
67	GO:0005198: structural molecule activity	6.89E-03
68	GO:0000049: tRNA binding	7.12E-03
69	GO:0051287: NAD binding	7.43E-03
70	GO:0004565: beta-galactosidase activity	7.78E-03
71	GO:0004089: carbonate dehydratase activity	7.78E-03
72	GO:0031072: heat shock protein binding	7.78E-03
73	GO:0008083: growth factor activity	8.47E-03
74	GO:0008266: poly(U) RNA binding	8.47E-03
75	GO:0004857: enzyme inhibitor activity	1.06E-02
76	GO:0005345: purine nucleobase transmembrane transporter activity	1.14E-02
77	GO:0015035: protein disulfide oxidoreductase activity	1.22E-02
78	GO:0003924: GTPase activity	1.37E-02
79	GO:0047134: protein-disulfide reductase activity	1.55E-02
80	GO:0004791: thioredoxin-disulfide reductase activity	1.82E-02
81	GO:0048038: quinone binding	2.01E-02
82	GO:0008017: microtubule binding	2.14E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.21E-02
84	GO:0008483: transaminase activity	2.41E-02
85	GO:0016597: amino acid binding	2.51E-02
86	GO:0016413: O-acetyltransferase activity	2.51E-02
87	GO:0008168: methyltransferase activity	3.05E-02
88	GO:0000287: magnesium ion binding	3.11E-02
89	GO:0016788: hydrolase activity, acting on ester bonds	3.23E-02
90	GO:0030145: manganese ion binding	3.50E-02
91	GO:0000149: SNARE binding	3.98E-02
92	GO:0051539: 4 iron, 4 sulfur cluster binding	4.10E-02
93	GO:0050661: NADP binding	4.10E-02
94	GO:0005484: SNAP receptor activity	4.47E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009515: granal stacked thylakoid	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
5	GO:0043235: receptor complex	0.00E+00
6	GO:0009507: chloroplast	2.60E-45
7	GO:0009535: chloroplast thylakoid membrane	7.12E-31
8	GO:0009534: chloroplast thylakoid	9.95E-23
9	GO:0009570: chloroplast stroma	4.21E-15
10	GO:0009543: chloroplast thylakoid lumen	1.79E-13
11	GO:0009579: thylakoid	3.14E-13
12	GO:0030095: chloroplast photosystem II	4.47E-13
13	GO:0009941: chloroplast envelope	1.34E-11
14	GO:0031977: thylakoid lumen	4.26E-09
15	GO:0010287: plastoglobule	1.19E-07
16	GO:0009523: photosystem II	1.97E-07
17	GO:0009538: photosystem I reaction center	3.03E-06
18	GO:0009654: photosystem II oxygen evolving complex	5.58E-05
19	GO:0009522: photosystem I	1.52E-04
20	GO:0019898: extrinsic component of membrane	1.68E-04
21	GO:0009783: photosystem II antenna complex	2.04E-04
22	GO:0031361: integral component of thylakoid membrane	2.04E-04
23	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.57E-04
24	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.57E-04
25	GO:0030076: light-harvesting complex	6.82E-04
26	GO:0010007: magnesium chelatase complex	7.44E-04
27	GO:0033281: TAT protein transport complex	7.44E-04
28	GO:0042651: thylakoid membrane	9.21E-04
29	GO:0009517: PSII associated light-harvesting complex II	1.41E-03
30	GO:0009533: chloroplast stromal thylakoid	3.13E-03
31	GO:0031305: integral component of mitochondrial inner membrane	3.63E-03
32	GO:0008180: COP9 signalosome	4.70E-03
33	GO:0055028: cortical microtubule	5.86E-03
34	GO:0005740: mitochondrial envelope	5.86E-03
35	GO:0012511: monolayer-surrounded lipid storage body	6.48E-03
36	GO:0032040: small-subunit processome	7.12E-03
37	GO:0009508: plastid chromosome	7.78E-03
38	GO:0005874: microtubule	7.99E-03
39	GO:0016021: integral component of membrane	9.33E-03
40	GO:0016020: membrane	9.33E-03
41	GO:0009706: chloroplast inner membrane	1.18E-02
42	GO:0009532: plastid stroma	1.22E-02
43	GO:0009504: cell plate	1.92E-02
44	GO:0048046: apoplast	2.12E-02
45	GO:0032580: Golgi cisterna membrane	2.30E-02
46	GO:0009295: nucleoid	2.41E-02
47	GO:0005778: peroxisomal membrane	2.41E-02
48	GO:0009707: chloroplast outer membrane	3.16E-02
49	GO:0019005: SCF ubiquitin ligase complex	3.16E-02
50	GO:0015934: large ribosomal subunit	3.50E-02
51	GO:0031201: SNARE complex	4.22E-02
52	GO:0031225: anchored component of membrane	4.88E-02