co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G22740

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090627: plant epidermal cell differentiation	0.00E+00
2	GO:0090279: regulation of calcium ion import	0.00E+00
3	GO:0071474: cellular hyperosmotic response	0.00E+00
4	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
5	GO:0030155: regulation of cell adhesion	0.00E+00
6	GO:0000025: maltose catabolic process	0.00E+00
7	GO:0015979: photosynthesis	3.05E-06
8	GO:0009773: photosynthetic electron transport in photosystem I	3.13E-05
9	GO:0005983: starch catabolic process	3.93E-05
10	GO:0009735: response to cytokinin	4.00E-05
11	GO:0006461: protein complex assembly	8.49E-05
12	GO:0009704: de-etiolation	2.80E-04
13	GO:0080093: regulation of photorespiration	2.84E-04
14	GO:0031998: regulation of fatty acid beta-oxidation	2.84E-04
15	GO:0010028: xanthophyll cycle	2.84E-04
16	GO:0000023: maltose metabolic process	2.84E-04
17	GO:0005980: glycogen catabolic process	2.84E-04
18	GO:0042761: very long-chain fatty acid biosynthetic process	4.91E-04
19	GO:0005982: starch metabolic process	4.91E-04
20	GO:0005976: polysaccharide metabolic process	6.25E-04
21	GO:1901959: positive regulation of cutin biosynthetic process	6.25E-04
22	GO:0031648: protein destabilization	6.25E-04
23	GO:0016122: xanthophyll metabolic process	6.25E-04
24	GO:0030388: fructose 1,6-bisphosphate metabolic process	6.25E-04
25	GO:0071712: ER-associated misfolded protein catabolic process	6.25E-04
26	GO:0051262: protein tetramerization	6.25E-04
27	GO:0032527: protein exit from endoplasmic reticulum	6.25E-04
28	GO:0006094: gluconeogenesis	8.57E-04
29	GO:0009266: response to temperature stimulus	9.62E-04
30	GO:1904278: positive regulation of wax biosynthetic process	1.01E-03
31	GO:0006518: peptide metabolic process	1.01E-03
32	GO:0080055: low-affinity nitrate transport	1.01E-03
33	GO:0090153: regulation of sphingolipid biosynthetic process	1.01E-03
34	GO:0048281: inflorescence morphogenesis	1.01E-03
35	GO:0006000: fructose metabolic process	1.01E-03
36	GO:0032940: secretion by cell	1.01E-03
37	GO:0010025: wax biosynthetic process	1.19E-03
38	GO:0010148: transpiration	1.45E-03
39	GO:0010731: protein glutathionylation	1.45E-03
40	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.45E-03
41	GO:1902358: sulfate transmembrane transport	1.45E-03
42	GO:1901000: regulation of response to salt stress	1.45E-03
43	GO:0030100: regulation of endocytosis	1.45E-03
44	GO:0010017: red or far-red light signaling pathway	1.75E-03
45	GO:0045723: positive regulation of fatty acid biosynthetic process	1.94E-03
46	GO:2000122: negative regulation of stomatal complex development	1.94E-03
47	GO:0015846: polyamine transport	1.94E-03
48	GO:0010021: amylopectin biosynthetic process	1.94E-03
49	GO:0010037: response to carbon dioxide	1.94E-03
50	GO:0006808: regulation of nitrogen utilization	1.94E-03
51	GO:0015976: carbon utilization	1.94E-03
52	GO:0010023: proanthocyanidin biosynthetic process	1.94E-03
53	GO:0051322: anaphase	1.94E-03
54	GO:0009765: photosynthesis, light harvesting	1.94E-03
55	GO:0006109: regulation of carbohydrate metabolic process	1.94E-03
56	GO:0015994: chlorophyll metabolic process	1.94E-03
57	GO:0010600: regulation of auxin biosynthetic process	1.94E-03
58	GO:0006097: glyoxylate cycle	2.48E-03
59	GO:0009409: response to cold	2.61E-03
60	GO:0043086: negative regulation of catalytic activity	2.64E-03
61	GO:0009913: epidermal cell differentiation	3.06E-03
62	GO:0010190: cytochrome b6f complex assembly	3.06E-03
63	GO:0000470: maturation of LSU-rRNA	3.06E-03
64	GO:0009955: adaxial/abaxial pattern specification	3.68E-03
65	GO:0071470: cellular response to osmotic stress	3.68E-03
66	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.68E-03
67	GO:0070370: cellular heat acclimation	4.34E-03
68	GO:0008272: sulfate transport	4.34E-03
69	GO:0009645: response to low light intensity stimulus	4.34E-03
70	GO:0010103: stomatal complex morphogenesis	4.34E-03
71	GO:0010161: red light signaling pathway	4.34E-03
72	GO:0030091: protein repair	5.03E-03
73	GO:0006353: DNA-templated transcription, termination	5.03E-03
74	GO:0009231: riboflavin biosynthetic process	5.03E-03
75	GO:0019827: stem cell population maintenance	5.03E-03
76	GO:0010928: regulation of auxin mediated signaling pathway	5.03E-03
77	GO:0008610: lipid biosynthetic process	5.03E-03
78	GO:0005978: glycogen biosynthetic process	5.03E-03
79	GO:0035265: organ growth	5.03E-03
80	GO:0015995: chlorophyll biosynthetic process	5.47E-03
81	GO:0001558: regulation of cell growth	5.77E-03
82	GO:0009657: plastid organization	5.77E-03
83	GO:0032544: plastid translation	5.77E-03
84	GO:0017004: cytochrome complex assembly	5.77E-03
85	GO:0006002: fructose 6-phosphate metabolic process	5.77E-03
86	GO:0009817: defense response to fungus, incompatible interaction	6.06E-03
87	GO:0000160: phosphorelay signal transduction system	6.37E-03
88	GO:0051865: protein autoubiquitination	6.54E-03
89	GO:0010206: photosystem II repair	6.54E-03
90	GO:0006783: heme biosynthetic process	6.54E-03
91	GO:0007623: circadian rhythm	6.71E-03
92	GO:0009631: cold acclimation	7.01E-03
93	GO:0008152: metabolic process	7.33E-03
94	GO:0055114: oxidation-reduction process	7.66E-03
95	GO:0034599: cellular response to oxidative stress	8.04E-03
96	GO:0006782: protoporphyrinogen IX biosynthetic process	8.19E-03
97	GO:0006949: syncytium formation	8.19E-03
98	GO:0031627: telomeric loop formation	8.19E-03
99	GO:0006415: translational termination	9.06E-03
100	GO:0043085: positive regulation of catalytic activity	9.06E-03
101	GO:0009750: response to fructose	9.06E-03
102	GO:0010015: root morphogenesis	9.06E-03
103	GO:0006631: fatty acid metabolic process	9.14E-03
104	GO:0010114: response to red light	9.92E-03
105	GO:0009644: response to high light intensity	1.07E-02
106	GO:0010102: lateral root morphogenesis	1.09E-02
107	GO:0009691: cytokinin biosynthetic process	1.09E-02
108	GO:0006108: malate metabolic process	1.09E-02
109	GO:0006006: glucose metabolic process	1.09E-02
110	GO:0009718: anthocyanin-containing compound biosynthetic process	1.09E-02
111	GO:0005986: sucrose biosynthetic process	1.09E-02
112	GO:0009658: chloroplast organization	1.17E-02
113	GO:0009887: animal organ morphogenesis	1.19E-02
114	GO:0009664: plant-type cell wall organization	1.25E-02
115	GO:0009585: red, far-red light phototransduction	1.34E-02
116	GO:0006979: response to oxidative stress	1.44E-02
117	GO:0009944: polarity specification of adaxial/abaxial axis	1.50E-02
118	GO:0006289: nucleotide-excision repair	1.50E-02
119	GO:0007017: microtubule-based process	1.60E-02
120	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-02
121	GO:0051302: regulation of cell division	1.60E-02
122	GO:0003333: amino acid transmembrane transport	1.72E-02
123	GO:0019915: lipid storage	1.72E-02
124	GO:0061077: chaperone-mediated protein folding	1.72E-02
125	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.83E-02
126	GO:0019748: secondary metabolic process	1.83E-02
127	GO:0045454: cell redox homeostasis	1.93E-02
128	GO:0009686: gibberellin biosynthetic process	1.95E-02
129	GO:0001944: vasculature development	1.95E-02
130	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.95E-02
131	GO:0006284: base-excision repair	2.07E-02
132	GO:0006869: lipid transport	2.17E-02
133	GO:0070417: cellular response to cold	2.19E-02
134	GO:0042335: cuticle development	2.31E-02
135	GO:0006662: glycerol ether metabolic process	2.44E-02
136	GO:0048868: pollen tube development	2.44E-02
137	GO:0009058: biosynthetic process	2.53E-02
138	GO:0048825: cotyledon development	2.70E-02
139	GO:0019252: starch biosynthetic process	2.70E-02
140	GO:0000302: response to reactive oxygen species	2.83E-02
141	GO:0005975: carbohydrate metabolic process	2.87E-02
142	GO:0071281: cellular response to iron ion	3.11E-02
143	GO:1901657: glycosyl compound metabolic process	3.11E-02
144	GO:0030163: protein catabolic process	3.11E-02
145	GO:0009828: plant-type cell wall loosening	3.25E-02
146	GO:0006310: DNA recombination	3.25E-02
147	GO:0000910: cytokinesis	3.54E-02
148	GO:0010027: thylakoid membrane organization	3.68E-02
149	GO:0016126: sterol biosynthetic process	3.68E-02
150	GO:0009739: response to gibberellin	3.70E-02
151	GO:0009607: response to biotic stimulus	3.83E-02
152	GO:0006974: cellular response to DNA damage stimulus	3.98E-02
153	GO:0009627: systemic acquired resistance	3.98E-02
154	GO:0009414: response to water deprivation	4.11E-02
155	GO:0042742: defense response to bacterium	4.25E-02
156	GO:0016311: dephosphorylation	4.29E-02
157	GO:0018298: protein-chromophore linkage	4.45E-02
158	GO:0009407: toxin catabolic process	4.76E-02
159	GO:0010218: response to far red light	4.76E-02
160	GO:0010119: regulation of stomatal movement	4.93E-02
161	GO:0007568: aging	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
2	GO:0004134: 4-alpha-glucanotransferase activity	0.00E+00
3	GO:0009899: ent-kaurene synthase activity	0.00E+00
4	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0005528: FK506 binding	3.35E-06
7	GO:2001070: starch binding	1.23E-04
8	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.57E-04
9	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.84E-04
10	GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity	2.84E-04
11	GO:0004645: phosphorylase activity	2.84E-04
12	GO:0004853: uroporphyrinogen decarboxylase activity	2.84E-04
13	GO:0008158: hedgehog receptor activity	2.84E-04
14	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.84E-04
15	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.84E-04
16	GO:0005227: calcium activated cation channel activity	2.84E-04
17	GO:0008184: glycogen phosphorylase activity	2.84E-04
18	GO:0018708: thiol S-methyltransferase activity	6.25E-04
19	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.25E-04
20	GO:0044390: ubiquitin-like protein conjugating enzyme binding	6.25E-04
21	GO:0010297: heteropolysaccharide binding	6.25E-04
22	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	6.25E-04
23	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.25E-04
24	GO:0017108: 5'-flap endonuclease activity	1.01E-03
25	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.01E-03
26	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.01E-03
27	GO:0004324: ferredoxin-NADP+ reductase activity	1.01E-03
28	GO:0043169: cation binding	1.01E-03
29	GO:0017150: tRNA dihydrouridine synthase activity	1.01E-03
30	GO:0015203: polyamine transmembrane transporter activity	1.45E-03
31	GO:0016851: magnesium chelatase activity	1.45E-03
32	GO:0016149: translation release factor activity, codon specific	1.45E-03
33	GO:0004506: squalene monooxygenase activity	1.94E-03
34	GO:0019199: transmembrane receptor protein kinase activity	1.94E-03
35	GO:0042277: peptide binding	1.94E-03
36	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.94E-03
37	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.94E-03
38	GO:0019104: DNA N-glycosylase activity	1.94E-03
39	GO:0003959: NADPH dehydrogenase activity	2.48E-03
40	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.48E-03
41	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.75E-03
42	GO:0004130: cytochrome-c peroxidase activity	3.06E-03
43	GO:0016615: malate dehydrogenase activity	3.06E-03
44	GO:0004332: fructose-bisphosphate aldolase activity	3.06E-03
45	GO:0048038: quinone binding	3.22E-03
46	GO:0000156: phosphorelay response regulator activity	3.66E-03
47	GO:0030060: L-malate dehydrogenase activity	3.68E-03
48	GO:0005261: cation channel activity	3.68E-03
49	GO:0004602: glutathione peroxidase activity	3.68E-03
50	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.68E-03
51	GO:0004620: phospholipase activity	4.34E-03
52	GO:0016831: carboxy-lyase activity	4.34E-03
53	GO:0016209: antioxidant activity	5.03E-03
54	GO:0008271: secondary active sulfate transmembrane transporter activity	5.77E-03
55	GO:0003747: translation release factor activity	6.54E-03
56	GO:0016787: hydrolase activity	7.06E-03
57	GO:0015174: basic amino acid transmembrane transporter activity	7.35E-03
58	GO:0008047: enzyme activator activity	8.19E-03
59	GO:0044183: protein binding involved in protein folding	9.06E-03
60	GO:0047372: acylglycerol lipase activity	9.06E-03
61	GO:0003691: double-stranded telomeric DNA binding	9.06E-03
62	GO:0004364: glutathione transferase activity	9.53E-03
63	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.96E-03
64	GO:0015116: sulfate transmembrane transporter activity	9.96E-03
65	GO:0008289: lipid binding	1.04E-02
66	GO:0051537: 2 iron, 2 sulfur cluster binding	1.07E-02
67	GO:0004022: alcohol dehydrogenase (NAD) activity	1.09E-02
68	GO:0004089: carbonate dehydratase activity	1.09E-02
69	GO:0004565: beta-galactosidase activity	1.09E-02
70	GO:0015293: symporter activity	1.12E-02
71	GO:0008266: poly(U) RNA binding	1.19E-02
72	GO:0031409: pigment binding	1.39E-02
73	GO:0004857: enzyme inhibitor activity	1.50E-02
74	GO:0030570: pectate lyase activity	1.95E-02
75	GO:0047134: protein-disulfide reductase activity	2.19E-02
76	GO:0016491: oxidoreductase activity	2.26E-02
77	GO:0019843: rRNA binding	2.40E-02
78	GO:0003713: transcription coactivator activity	2.44E-02
79	GO:0001085: RNA polymerase II transcription factor binding	2.44E-02
80	GO:0004791: thioredoxin-disulfide reductase activity	2.57E-02
81	GO:0004252: serine-type endopeptidase activity	2.66E-02
82	GO:0004518: nuclease activity	2.97E-02
83	GO:0046910: pectinesterase inhibitor activity	3.08E-02
84	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.11E-02
85	GO:0003684: damaged DNA binding	3.25E-02
86	GO:0005200: structural constituent of cytoskeleton	3.39E-02
87	GO:0016597: amino acid binding	3.54E-02
88	GO:0016168: chlorophyll binding	3.83E-02
89	GO:0102483: scopolin beta-glucosidase activity	4.13E-02
90	GO:0008236: serine-type peptidase activity	4.29E-02
91	GO:0004222: metalloendopeptidase activity	4.76E-02
92	GO:0008168: methyltransferase activity	4.90E-02
93	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0033557: Slx1-Slx4 complex	0.00E+00
2	GO:0042579: microbody	0.00E+00
3	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
4	GO:0009535: chloroplast thylakoid membrane	7.75E-18
5	GO:0009507: chloroplast	5.86E-16
6	GO:0009534: chloroplast thylakoid	2.76E-15
7	GO:0009941: chloroplast envelope	1.76E-11
8	GO:0009570: chloroplast stroma	5.50E-11
9	GO:0009579: thylakoid	1.72E-09
10	GO:0009543: chloroplast thylakoid lumen	4.03E-08
11	GO:0031977: thylakoid lumen	1.35E-05
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.39E-05
13	GO:0030095: chloroplast photosystem II	5.88E-05
14	GO:0009533: chloroplast stromal thylakoid	2.21E-04
15	GO:0009501: amyloplast	2.80E-04
16	GO:0031357: integral component of chloroplast inner membrane	6.25E-04
17	GO:0043036: starch grain	6.25E-04
18	GO:0030093: chloroplast photosystem I	6.25E-04
19	GO:0010287: plastoglobule	7.35E-04
20	GO:0009508: plastid chromosome	8.57E-04
21	GO:0010007: magnesium chelatase complex	1.01E-03
22	GO:0036513: Derlin-1 retrotranslocation complex	1.45E-03
23	GO:0055035: plastid thylakoid membrane	2.48E-03
24	GO:0009523: photosystem II	3.01E-03
25	GO:0005798: Golgi-associated vesicle	3.06E-03
26	GO:0009295: nucleoid	4.14E-03
27	GO:0010319: stromule	4.14E-03
28	GO:0009538: photosystem I reaction center	5.03E-03
29	GO:0000783: nuclear telomere cap complex	5.77E-03
30	GO:0042644: chloroplast nucleoid	6.54E-03
31	GO:0045298: tubulin complex	6.54E-03
32	GO:0048046: apoplast	8.57E-03
33	GO:0009574: preprophase band	1.09E-02
34	GO:0030076: light-harvesting complex	1.29E-02
35	GO:0005769: early endosome	1.39E-02
36	GO:0042651: thylakoid membrane	1.60E-02
37	GO:0009654: photosystem II oxygen evolving complex	1.60E-02
38	GO:0009522: photosystem I	2.57E-02
39	GO:0019898: extrinsic component of membrane	2.70E-02
40	GO:0016020: membrane	2.87E-02
41	GO:0005667: transcription factor complex	3.98E-02
42	GO:0015934: large ribosomal subunit	4.93E-02