co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G22430

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
2	GO:0016553: base conversion or substitution editing	0.00E+00
3	GO:0090627: plant epidermal cell differentiation	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0015717: triose phosphate transport	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:0000023: maltose metabolic process	0.00E+00
8	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
9	GO:0002184: cytoplasmic translational termination	0.00E+00
10	GO:0030155: regulation of cell adhesion	0.00E+00
11	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
12	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
13	GO:0015979: photosynthesis	1.55E-09
14	GO:0009735: response to cytokinin	6.35E-09
15	GO:0042254: ribosome biogenesis	7.86E-08
16	GO:0032544: plastid translation	1.37E-07
17	GO:0009773: photosynthetic electron transport in photosystem I	7.07E-07
18	GO:0006412: translation	7.92E-07
19	GO:0030388: fructose 1,6-bisphosphate metabolic process	4.02E-06
20	GO:0009409: response to cold	1.42E-05
21	GO:0006000: fructose metabolic process	1.44E-05
22	GO:0005983: starch catabolic process	4.33E-05
23	GO:0006094: gluconeogenesis	5.34E-05
24	GO:0010021: amylopectin biosynthetic process	5.77E-05
25	GO:0019464: glycine decarboxylation via glycine cleavage system	5.77E-05
26	GO:0006461: protein complex assembly	9.10E-05
27	GO:0010025: wax biosynthetic process	9.16E-05
28	GO:0043489: RNA stabilization	2.97E-04
29	GO:0080093: regulation of photorespiration	2.97E-04
30	GO:0031998: regulation of fatty acid beta-oxidation	2.97E-04
31	GO:0000025: maltose catabolic process	2.97E-04
32	GO:0005978: glycogen biosynthetic process	2.98E-04
33	GO:0019252: starch biosynthetic process	3.49E-04
34	GO:0006002: fructose 6-phosphate metabolic process	3.66E-04
35	GO:0010206: photosystem II repair	4.41E-04
36	GO:0042761: very long-chain fatty acid biosynthetic process	5.22E-04
37	GO:0009658: chloroplast organization	5.85E-04
38	GO:0009629: response to gravity	6.50E-04
39	GO:0005976: polysaccharide metabolic process	6.50E-04
40	GO:0007154: cell communication	6.50E-04
41	GO:0018026: peptidyl-lysine monomethylation	6.50E-04
42	GO:0031648: protein destabilization	6.50E-04
43	GO:0010270: photosystem II oxygen evolving complex assembly	6.50E-04
44	GO:0015995: chlorophyll biosynthetic process	7.54E-04
45	GO:0009817: defense response to fungus, incompatible interaction	8.58E-04
46	GO:0005986: sucrose biosynthetic process	9.08E-04
47	GO:0006518: peptide metabolic process	1.05E-03
48	GO:0010623: programmed cell death involved in cell development	1.05E-03
49	GO:0080055: low-affinity nitrate transport	1.05E-03
50	GO:0035436: triose phosphate transmembrane transport	1.05E-03
51	GO:0090153: regulation of sphingolipid biosynthetic process	1.05E-03
52	GO:0048281: inflorescence morphogenesis	1.05E-03
53	GO:0006289: nucleotide-excision repair	1.40E-03
54	GO:0010148: transpiration	1.51E-03
55	GO:0010731: protein glutathionylation	1.51E-03
56	GO:0006424: glutamyl-tRNA aminoacylation	1.51E-03
57	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.51E-03
58	GO:1902358: sulfate transmembrane transport	1.51E-03
59	GO:1901000: regulation of response to salt stress	1.51E-03
60	GO:0030100: regulation of endocytosis	1.51E-03
61	GO:0061077: chaperone-mediated protein folding	1.70E-03
62	GO:2000122: negative regulation of stomatal complex development	2.02E-03
63	GO:0010508: positive regulation of autophagy	2.02E-03
64	GO:0015713: phosphoglycerate transport	2.02E-03
65	GO:0006546: glycine catabolic process	2.02E-03
66	GO:0010037: response to carbon dioxide	2.02E-03
67	GO:0006808: regulation of nitrogen utilization	2.02E-03
68	GO:0015976: carbon utilization	2.02E-03
69	GO:0051322: anaphase	2.02E-03
70	GO:0009765: photosynthesis, light harvesting	2.02E-03
71	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.02E-03
72	GO:0010600: regulation of auxin biosynthetic process	2.02E-03
73	GO:0009664: plant-type cell wall organization	2.11E-03
74	GO:0006284: base-excision repair	2.20E-03
75	GO:0006544: glycine metabolic process	2.58E-03
76	GO:0032543: mitochondrial translation	2.58E-03
77	GO:0006097: glyoxylate cycle	2.58E-03
78	GO:0009643: photosynthetic acclimation	3.19E-03
79	GO:0006563: L-serine metabolic process	3.19E-03
80	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.19E-03
81	GO:0000470: maturation of LSU-rRNA	3.19E-03
82	GO:0006828: manganese ion transport	3.19E-03
83	GO:0009913: epidermal cell differentiation	3.19E-03
84	GO:1901259: chloroplast rRNA processing	3.84E-03
85	GO:0006458: 'de novo' protein folding	3.84E-03
86	GO:0009955: adaxial/abaxial pattern specification	3.84E-03
87	GO:0071470: cellular response to osmotic stress	3.84E-03
88	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.84E-03
89	GO:0042026: protein refolding	3.84E-03
90	GO:0009828: plant-type cell wall loosening	4.15E-03
91	GO:0008272: sulfate transport	4.53E-03
92	GO:0070370: cellular heat acclimation	4.53E-03
93	GO:0009645: response to low light intensity stimulus	4.53E-03
94	GO:0010103: stomatal complex morphogenesis	4.53E-03
95	GO:0010161: red light signaling pathway	4.53E-03
96	GO:0010027: thylakoid membrane organization	4.94E-03
97	GO:0006979: response to oxidative stress	5.11E-03
98	GO:0030091: protein repair	5.26E-03
99	GO:0009704: de-etiolation	5.26E-03
100	GO:0010928: regulation of auxin mediated signaling pathway	5.26E-03
101	GO:0009657: plastid organization	6.03E-03
102	GO:0001558: regulation of cell growth	6.03E-03
103	GO:0006783: heme biosynthetic process	6.83E-03
104	GO:0051865: protein autoubiquitination	6.83E-03
105	GO:0009631: cold acclimation	7.46E-03
106	GO:0005982: starch metabolic process	7.67E-03
107	GO:0035999: tetrahydrofolate interconversion	7.67E-03
108	GO:0008152: metabolic process	8.05E-03
109	GO:0048829: root cap development	8.55E-03
110	GO:0006949: syncytium formation	8.55E-03
111	GO:0006782: protoporphyrinogen IX biosynthetic process	8.55E-03
112	GO:0006415: translational termination	9.46E-03
113	GO:0009073: aromatic amino acid family biosynthetic process	9.46E-03
114	GO:0009750: response to fructose	9.46E-03
115	GO:0006816: calcium ion transport	9.46E-03
116	GO:0006810: transport	1.06E-02
117	GO:0010114: response to red light	1.06E-02
118	GO:0010102: lateral root morphogenesis	1.14E-02
119	GO:0010628: positive regulation of gene expression	1.14E-02
120	GO:0006108: malate metabolic process	1.14E-02
121	GO:0019253: reductive pentose-phosphate cycle	1.24E-02
122	GO:0010020: chloroplast fission	1.24E-02
123	GO:0005985: sucrose metabolic process	1.34E-02
124	GO:0009944: polarity specification of adaxial/abaxial axis	1.56E-02
125	GO:0000027: ribosomal large subunit assembly	1.56E-02
126	GO:0007017: microtubule-based process	1.68E-02
127	GO:0009768: photosynthesis, light harvesting in photosystem I	1.68E-02
128	GO:0051302: regulation of cell division	1.68E-02
129	GO:0006418: tRNA aminoacylation for protein translation	1.68E-02
130	GO:0016114: terpenoid biosynthetic process	1.79E-02
131	GO:0019915: lipid storage	1.79E-02
132	GO:0035428: hexose transmembrane transport	1.91E-02
133	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.91E-02
134	GO:0010017: red or far-red light signaling pathway	1.91E-02
135	GO:0001944: vasculature development	2.03E-02
136	GO:0010089: xylem development	2.16E-02
137	GO:0042335: cuticle development	2.42E-02
138	GO:0080022: primary root development	2.42E-02
139	GO:0048868: pollen tube development	2.55E-02
140	GO:0046323: glucose import	2.55E-02
141	GO:0009058: biosynthetic process	2.69E-02
142	GO:0006281: DNA repair	2.72E-02
143	GO:0048825: cotyledon development	2.82E-02
144	GO:0000302: response to reactive oxygen species	2.96E-02
145	GO:0009790: embryo development	2.98E-02
146	GO:0030163: protein catabolic process	3.25E-02
147	GO:0006310: DNA recombination	3.39E-02
148	GO:0007623: circadian rhythm	3.52E-02
149	GO:0000910: cytokinesis	3.70E-02
150	GO:0016311: dephosphorylation	4.48E-02
151	GO:0048481: plant ovule development	4.65E-02
152	GO:0018298: protein-chromophore linkage	4.65E-02
153	GO:0042742: defense response to bacterium	4.65E-02
154	GO:0009407: toxin catabolic process	4.98E-02
155	GO:0010218: response to far red light	4.98E-02
156	GO:0009834: plant-type secondary cell wall biogenesis	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0102193: protein-ribulosamine 3-kinase activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0047513: 1,2-alpha-L-fucosidase activity	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity	0.00E+00
7	GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0019843: rRNA binding	1.17E-13
10	GO:0003735: structural constituent of ribosome	7.19E-09
11	GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity	4.02E-06
12	GO:0008266: poly(U) RNA binding	6.46E-05
13	GO:0004856: xylulokinase activity	2.97E-04
14	GO:0004134: 4-alpha-glucanotransferase activity	2.97E-04
15	GO:0004853: uroporphyrinogen decarboxylase activity	2.97E-04
16	GO:0008158: hedgehog receptor activity	2.97E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.97E-04
18	GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity	2.97E-04
19	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.97E-04
20	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	2.97E-04
21	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.97E-04
22	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.50E-04
23	GO:0008967: phosphoglycolate phosphatase activity	6.50E-04
24	GO:0010297: heteropolysaccharide binding	6.50E-04
25	GO:0047216: inositol 3-alpha-galactosyltransferase activity	6.50E-04
26	GO:0033201: alpha-1,4-glucan synthase activity	6.50E-04
27	GO:0018708: thiol S-methyltransferase activity	6.50E-04
28	GO:0044183: protein binding involved in protein folding	7.02E-04
29	GO:0017108: 5'-flap endonuclease activity	1.05E-03
30	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.05E-03
31	GO:0030267: glyoxylate reductase (NADP) activity	1.05E-03
32	GO:0071917: triose-phosphate transmembrane transporter activity	1.05E-03
33	GO:0080054: low-affinity nitrate transmembrane transporter activity	1.05E-03
34	GO:0004324: ferredoxin-NADP+ reductase activity	1.05E-03
35	GO:0043169: cation binding	1.05E-03
36	GO:0004373: glycogen (starch) synthase activity	1.05E-03
37	GO:0017150: tRNA dihydrouridine synthase activity	1.05E-03
38	GO:0002161: aminoacyl-tRNA editing activity	1.05E-03
39	GO:0005528: FK506 binding	1.40E-03
40	GO:0016851: magnesium chelatase activity	1.51E-03
41	GO:0016149: translation release factor activity, codon specific	1.51E-03
42	GO:0043023: ribosomal large subunit binding	1.51E-03
43	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.51E-03
44	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.92E-03
45	GO:0009011: starch synthase activity	2.02E-03
46	GO:0008878: glucose-1-phosphate adenylyltransferase activity	2.02E-03
47	GO:0042277: peptide binding	2.02E-03
48	GO:0015120: phosphoglycerate transmembrane transporter activity	2.02E-03
49	GO:0016279: protein-lysine N-methyltransferase activity	2.02E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.02E-03
51	GO:0019104: DNA N-glycosylase activity	2.02E-03
52	GO:0019199: transmembrane receptor protein kinase activity	2.02E-03
53	GO:0003959: NADPH dehydrogenase activity	2.58E-03
54	GO:0045300: acyl-[acyl-carrier-protein] desaturase activity	2.58E-03
55	GO:0008725: DNA-3-methyladenine glycosylase activity	2.58E-03
56	GO:0004372: glycine hydroxymethyltransferase activity	2.58E-03
57	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.58E-03
58	GO:0016491: oxidoreductase activity	2.82E-03
59	GO:0016615: malate dehydrogenase activity	3.19E-03
60	GO:2001070: starch binding	3.19E-03
61	GO:0004332: fructose-bisphosphate aldolase activity	3.19E-03
62	GO:0004130: cytochrome-c peroxidase activity	3.19E-03
63	GO:0048038: quinone binding	3.42E-03
64	GO:0030060: L-malate dehydrogenase activity	3.84E-03
65	GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity	3.84E-03
66	GO:0004602: glutathione peroxidase activity	3.84E-03
67	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	3.84E-03
68	GO:0004033: aldo-keto reductase (NADP) activity	5.26E-03
69	GO:0016209: antioxidant activity	5.26E-03
70	GO:0008271: secondary active sulfate transmembrane transporter activity	6.03E-03
71	GO:0008236: serine-type peptidase activity	6.13E-03
72	GO:0003747: translation release factor activity	6.83E-03
73	GO:0004222: metalloendopeptidase activity	7.11E-03
74	GO:0005384: manganese ion transmembrane transporter activity	7.67E-03
75	GO:0047372: acylglycerol lipase activity	9.46E-03
76	GO:0004364: glutathione transferase activity	1.01E-02
77	GO:0000049: tRNA binding	1.04E-02
78	GO:0015116: sulfate transmembrane transporter activity	1.04E-02
79	GO:0004089: carbonate dehydratase activity	1.14E-02
80	GO:0015095: magnesium ion transmembrane transporter activity	1.14E-02
81	GO:0031409: pigment binding	1.45E-02
82	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.75E-02
83	GO:0004812: aminoacyl-tRNA ligase activity	2.29E-02
84	GO:0005355: glucose transmembrane transporter activity	2.68E-02
85	GO:0050662: coenzyme binding	2.68E-02
86	GO:0004252: serine-type endopeptidase activity	2.83E-02
87	GO:0004518: nuclease activity	3.10E-02
88	GO:0003684: damaged DNA binding	3.39E-02
89	GO:0008237: metallopeptidase activity	3.55E-02
90	GO:0005200: structural constituent of cytoskeleton	3.55E-02
91	GO:0016168: chlorophyll binding	4.00E-02
92	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	4.46E-02

Rank	GO Term	Adjusted P value
1	GO:0005943: phosphatidylinositol 3-kinase complex, class IA	0.00E+00
2	GO:0033557: Slx1-Slx4 complex	0.00E+00
3	GO:0042579: microbody	0.00E+00
4	GO:0098572: stromal side of plastid thylakoid membrane	0.00E+00
5	GO:0009507: chloroplast	2.25E-51
6	GO:0009941: chloroplast envelope	1.67E-41
7	GO:0009570: chloroplast stroma	3.08E-38
8	GO:0009534: chloroplast thylakoid	5.26E-30
9	GO:0009535: chloroplast thylakoid membrane	5.79E-27
10	GO:0009579: thylakoid	1.49E-21
11	GO:0005840: ribosome	7.58E-11
12	GO:0009543: chloroplast thylakoid lumen	9.78E-11
13	GO:0031977: thylakoid lumen	9.62E-10
14	GO:0010287: plastoglobule	4.15E-08
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.54E-05
16	GO:0016020: membrane	4.17E-05
17	GO:0030095: chloroplast photosystem II	6.46E-05
18	GO:0009706: chloroplast inner membrane	8.52E-05
19	GO:0009533: chloroplast stromal thylakoid	2.36E-04
20	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	2.97E-04
21	GO:0009501: amyloplast	2.98E-04
22	GO:0009538: photosystem I reaction center	2.98E-04
23	GO:0010319: stromule	5.29E-04
24	GO:0009295: nucleoid	5.29E-04
25	GO:0030093: chloroplast photosystem I	6.50E-04
26	GO:0031969: chloroplast membrane	8.55E-04
27	GO:0009508: plastid chromosome	9.08E-04
28	GO:0010007: magnesium chelatase complex	1.05E-03
29	GO:0005960: glycine cleavage complex	1.51E-03
30	GO:0009654: photosystem II oxygen evolving complex	1.55E-03
31	GO:0005798: Golgi-associated vesicle	3.19E-03
32	GO:0009523: photosystem II	3.20E-03
33	GO:0019898: extrinsic component of membrane	3.20E-03
34	GO:0048046: apoplast	3.85E-03
35	GO:0042644: chloroplast nucleoid	6.83E-03
36	GO:0045298: tubulin complex	6.83E-03
37	GO:0005763: mitochondrial small ribosomal subunit	6.83E-03
38	GO:0009536: plastid	7.50E-03
39	GO:0000311: plastid large ribosomal subunit	1.04E-02
40	GO:0009574: preprophase band	1.14E-02
41	GO:0030076: light-harvesting complex	1.34E-02
42	GO:0005769: early endosome	1.45E-02
43	GO:0042651: thylakoid membrane	1.68E-02
44	GO:0022625: cytosolic large ribosomal subunit	1.78E-02
45	GO:0015935: small ribosomal subunit	1.79E-02
46	GO:0009522: photosystem I	2.68E-02
47	GO:0030529: intracellular ribonucleoprotein complex	3.85E-02