Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G21720

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006592: ornithine biosynthetic process0.00E+00
2GO:0032211: negative regulation of telomere maintenance via telomerase0.00E+00
3GO:0030970: retrograde protein transport, ER to cytosol0.00E+00
4GO:0023052: signaling0.00E+00
5GO:0019428: allantoin biosynthetic process0.00E+00
6GO:0006721: terpenoid metabolic process0.00E+00
7GO:1901799: negative regulation of proteasomal protein catabolic process0.00E+00
8GO:0006489: dolichyl diphosphate biosynthetic process0.00E+00
9GO:0033539: fatty acid beta-oxidation using acyl-CoA dehydrogenase0.00E+00
10GO:0001881: receptor recycling0.00E+00
11GO:0006511: ubiquitin-dependent protein catabolic process6.90E-28
12GO:0051603: proteolysis involved in cellular protein catabolic process1.41E-09
13GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process7.63E-09
14GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly3.93E-06
15GO:0030433: ubiquitin-dependent ERAD pathway1.81E-05
16GO:0008333: endosome to lysosome transport2.48E-05
17GO:0015986: ATP synthesis coupled proton transport4.81E-05
18GO:0030163: protein catabolic process8.06E-05
19GO:0097428: protein maturation by iron-sulfur cluster transfer1.48E-04
20GO:0006487: protein N-linked glycosylation2.01E-04
21GO:0043248: proteasome assembly2.12E-04
22GO:0010043: response to zinc ion2.55E-04
23GO:0006120: mitochondrial electron transport, NADH to ubiquinone2.85E-04
24GO:0001560: regulation of cell growth by extracellular stimulus3.99E-04
25GO:2001006: regulation of cellulose biosynthetic process3.99E-04
26GO:0019628: urate catabolic process3.99E-04
27GO:0016487: farnesol metabolic process3.99E-04
28GO:0009240: isopentenyl diphosphate biosynthetic process3.99E-04
29GO:0003400: regulation of COPII vesicle coating3.99E-04
30GO:0010265: SCF complex assembly3.99E-04
31GO:0031468: nuclear envelope reassembly3.99E-04
32GO:0006144: purine nucleobase metabolic process3.99E-04
33GO:0015798: myo-inositol transport3.99E-04
34GO:0015991: ATP hydrolysis coupled proton transport4.62E-04
35GO:0046686: response to cadmium ion4.77E-04
36GO:0009245: lipid A biosynthetic process6.76E-04
37GO:2000072: regulation of defense response to fungus, incompatible interaction8.66E-04
38GO:0046939: nucleotide phosphorylation8.66E-04
39GO:0019483: beta-alanine biosynthetic process8.66E-04
40GO:0015786: UDP-glucose transport8.66E-04
41GO:0006212: uracil catabolic process8.66E-04
42GO:0006432: phenylalanyl-tRNA aminoacylation8.66E-04
43GO:0051788: response to misfolded protein8.66E-04
44GO:0071668: plant-type cell wall assembly8.66E-04
45GO:0043132: NAD transport8.66E-04
46GO:0050992: dimethylallyl diphosphate biosynthetic process8.66E-04
47GO:0016925: protein sumoylation1.22E-03
48GO:0006807: nitrogen compound metabolic process1.38E-03
49GO:0015783: GDP-fucose transport1.40E-03
50GO:0010498: proteasomal protein catabolic process1.40E-03
51GO:0046417: chorismate metabolic process1.40E-03
52GO:0044375: regulation of peroxisome size1.40E-03
53GO:0045793: positive regulation of cell size1.40E-03
54GO:0006760: folic acid-containing compound metabolic process1.40E-03
55GO:0007030: Golgi organization1.75E-03
56GO:0006166: purine ribonucleoside salvage2.03E-03
57GO:0006107: oxaloacetate metabolic process2.03E-03
58GO:0009647: skotomorphogenesis2.03E-03
59GO:0072334: UDP-galactose transmembrane transport2.03E-03
60GO:0010255: glucose mediated signaling pathway2.03E-03
61GO:1901332: negative regulation of lateral root development2.03E-03
62GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity2.03E-03
63GO:0006168: adenine salvage2.03E-03
64GO:0015858: nucleoside transport2.03E-03
65GO:0051289: protein homotetramerization2.03E-03
66GO:0006882: cellular zinc ion homeostasis2.03E-03
67GO:0001676: long-chain fatty acid metabolic process2.03E-03
68GO:0032877: positive regulation of DNA endoreduplication2.03E-03
69GO:0046836: glycolipid transport2.03E-03
70GO:0008299: isoprenoid biosynthetic process2.38E-03
71GO:0061077: chaperone-mediated protein folding2.62E-03
72GO:0015992: proton transport2.62E-03
73GO:0051781: positive regulation of cell division2.73E-03
74GO:0010363: regulation of plant-type hypersensitive response2.73E-03
75GO:0006221: pyrimidine nucleotide biosynthetic process2.73E-03
76GO:0044205: 'de novo' UMP biosynthetic process2.73E-03
77GO:0032366: intracellular sterol transport2.73E-03
78GO:0016226: iron-sulfur cluster assembly2.87E-03
79GO:0044209: AMP salvage3.49E-03
80GO:0009697: salicylic acid biosynthetic process3.49E-03
81GO:0036065: fucosylation3.49E-03
82GO:0042147: retrograde transport, endosome to Golgi3.69E-03
83GO:0000413: protein peptidyl-prolyl isomerization3.99E-03
84GO:0006777: Mo-molybdopterin cofactor biosynthetic process4.32E-03
85GO:0002238: response to molecule of fungal origin4.32E-03
86GO:1901001: negative regulation of response to salt stress5.20E-03
87GO:0009554: megasporogenesis5.20E-03
88GO:0032880: regulation of protein localization6.15E-03
89GO:0048528: post-embryonic root development6.15E-03
90GO:0006744: ubiquinone biosynthetic process6.15E-03
91GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c6.15E-03
92GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.15E-03
93GO:0010044: response to aluminum ion6.15E-03
94GO:0006914: autophagy6.44E-03
95GO:0018105: peptidyl-serine phosphorylation6.60E-03
96GO:0009690: cytokinin metabolic process7.15E-03
97GO:0006506: GPI anchor biosynthetic process7.15E-03
98GO:0000028: ribosomal small subunit assembly7.15E-03
99GO:0031540: regulation of anthocyanin biosynthetic process7.15E-03
100GO:0009808: lignin metabolic process8.21E-03
101GO:0022900: electron transport chain8.21E-03
102GO:0001510: RNA methylation8.21E-03
103GO:0006526: arginine biosynthetic process8.21E-03
104GO:0043562: cellular response to nitrogen levels8.21E-03
105GO:0098656: anion transmembrane transport9.31E-03
106GO:0046685: response to arsenic-containing substance9.31E-03
107GO:0006754: ATP biosynthetic process9.31E-03
108GO:0048589: developmental growth9.31E-03
109GO:0009793: embryo development ending in seed dormancy9.82E-03
110GO:0071577: zinc II ion transmembrane transport1.05E-02
111GO:0010449: root meristem growth1.05E-02
112GO:0009832: plant-type cell wall biogenesis1.06E-02
113GO:0000103: sulfate assimilation1.17E-02
114GO:0043069: negative regulation of programmed cell death1.17E-02
115GO:0009853: photorespiration1.28E-02
116GO:0010015: root morphogenesis1.29E-02
117GO:0009073: aromatic amino acid family biosynthetic process1.29E-02
118GO:0048229: gametophyte development1.29E-02
119GO:0006412: translation1.30E-02
120GO:0006099: tricarboxylic acid cycle1.34E-02
121GO:0009408: response to heat1.36E-02
122GO:0071365: cellular response to auxin stimulus1.43E-02
123GO:0006820: anion transport1.43E-02
124GO:0006631: fatty acid metabolic process1.52E-02
125GO:0006626: protein targeting to mitochondrion1.56E-02
126GO:0006108: malate metabolic process1.56E-02
127GO:0007034: vacuolar transport1.70E-02
128GO:0002237: response to molecule of bacterial origin1.70E-02
129GO:0000209: protein polyubiquitination1.72E-02
130GO:0009969: xyloglucan biosynthetic process1.84E-02
131GO:0009116: nucleoside metabolic process2.14E-02
132GO:0006406: mRNA export from nucleus2.14E-02
133GO:0006289: nucleotide-excision repair2.14E-02
134GO:0010187: negative regulation of seed germination2.14E-02
135GO:0006486: protein glycosylation2.23E-02
136GO:0009651: response to salt stress2.29E-02
137GO:0010431: seed maturation2.46E-02
138GO:0019748: secondary metabolic process2.63E-02
139GO:0035428: hexose transmembrane transport2.63E-02
140GO:0007005: mitochondrion organization2.63E-02
141GO:0006012: galactose metabolic process2.79E-02
142GO:0009735: response to cytokinin2.80E-02
143GO:0019722: calcium-mediated signaling2.96E-02
144GO:0009306: protein secretion2.96E-02
145GO:0009553: embryo sac development3.08E-02
146GO:0034220: ion transmembrane transport3.32E-02
147GO:0010051: xylem and phloem pattern formation3.32E-02
148GO:0046323: glucose import3.50E-02
149GO:0008360: regulation of cell shape3.50E-02
150GO:0006662: glycerol ether metabolic process3.50E-02
151GO:0061025: membrane fusion3.69E-02
152GO:0048825: cotyledon development3.87E-02
153GO:0006623: protein targeting to vacuole3.87E-02
154GO:0009556: microsporogenesis3.87E-02
155GO:0080156: mitochondrial mRNA modification4.07E-02
156GO:0010193: response to ozone4.07E-02
157GO:0009630: gravitropism4.26E-02
158GO:0006457: protein folding4.63E-02
159GO:0010286: heat acclimation4.86E-02
160GO:0015031: protein transport4.94E-02
161GO:0006633: fatty acid biosynthetic process4.97E-02
RankGO TermAdjusted P value
1GO:0003837: beta-ureidopropionase activity0.00E+00
2GO:0050152: omega-amidase activity0.00E+00
3GO:0044610: FMN transmembrane transporter activity0.00E+00
4GO:0061799: cyclic pyranopterin monophosphate synthase activity0.00E+00
5GO:0047886: farnesol dehydrogenase activity0.00E+00
6GO:0004151: dihydroorotase activity0.00E+00
7GO:0008777: acetylornithine deacetylase activity0.00E+00
8GO:0033971: hydroxyisourate hydrolase activity0.00E+00
9GO:0008670: 2,4-dienoyl-CoA reductase (NADPH) activity0.00E+00
10GO:0051997: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase activity0.00E+00
11GO:0004298: threonine-type endopeptidase activity9.61E-41
12GO:0008233: peptidase activity1.18E-20
13GO:0008137: NADH dehydrogenase (ubiquinone) activity3.20E-06
14GO:0036402: proteasome-activating ATPase activity3.93E-06
15GO:0050897: cobalt ion binding2.35E-05
16GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.46E-05
17GO:0004576: oligosaccharyl transferase activity9.53E-05
18GO:0017025: TBP-class protein binding1.47E-04
19GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity1.48E-04
20GO:0031386: protein tag1.48E-04
21GO:0031177: phosphopantetheine binding2.12E-04
22GO:0000035: acyl binding2.85E-04
23GO:0003735: structural constituent of ribosome3.32E-04
24GO:0003975: UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity3.99E-04
25GO:0004452: isopentenyl-diphosphate delta-isomerase activity3.99E-04
26GO:0005090: Sar guanyl-nucleotide exchange factor activity3.99E-04
27GO:0015230: FAD transmembrane transporter activity3.99E-04
28GO:0019786: Atg8-specific protease activity3.99E-04
29GO:0000036: ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process4.62E-04
30GO:0046933: proton-transporting ATP synthase activity, rotational mechanism5.10E-04
31GO:0051724: NAD transporter activity8.66E-04
32GO:0050347: trans-octaprenyltranstransferase activity8.66E-04
33GO:1990585: hydroxyproline O-arabinosyltransferase activity8.66E-04
34GO:0004106: chorismate mutase activity8.66E-04
35GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity8.66E-04
36GO:0019172: glyoxalase III activity8.66E-04
37GO:0004826: phenylalanine-tRNA ligase activity8.66E-04
38GO:0019779: Atg8 activating enzyme activity8.66E-04
39GO:0005366: myo-inositol:proton symporter activity8.66E-04
40GO:0008963: phospho-N-acetylmuramoyl-pentapeptide-transferase activity8.66E-04
41GO:0015228: coenzyme A transmembrane transporter activity8.66E-04
42GO:0046961: proton-transporting ATPase activity, rotational mechanism1.07E-03
43GO:0004129: cytochrome-c oxidase activity1.07E-03
44GO:0005457: GDP-fucose transmembrane transporter activity1.40E-03
45GO:0052692: raffinose alpha-galactosidase activity1.40E-03
46GO:0008430: selenium binding1.40E-03
47GO:0005047: signal recognition particle binding1.40E-03
48GO:0004557: alpha-galactosidase activity1.40E-03
49GO:0004175: endopeptidase activity1.56E-03
50GO:0017089: glycolipid transporter activity2.03E-03
51GO:0019201: nucleotide kinase activity2.03E-03
52GO:0003999: adenine phosphoribosyltransferase activity2.03E-03
53GO:0005460: UDP-glucose transmembrane transporter activity2.03E-03
54GO:0043130: ubiquitin binding2.16E-03
55GO:0005528: FK506 binding2.16E-03
56GO:0016887: ATPase activity2.30E-03
57GO:0004540: ribonuclease activity2.62E-03
58GO:0010011: auxin binding2.73E-03
59GO:0051861: glycolipid binding2.73E-03
60GO:0015369: calcium:proton antiporter activity2.73E-03
61GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.73E-03
62GO:0070628: proteasome binding2.73E-03
63GO:0019776: Atg8 ligase activity2.73E-03
64GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor2.73E-03
65GO:0004659: prenyltransferase activity2.73E-03
66GO:0015368: calcium:cation antiporter activity2.73E-03
67GO:0005459: UDP-galactose transmembrane transporter activity3.49E-03
68GO:0008198: ferrous iron binding3.49E-03
69GO:0080122: AMP transmembrane transporter activity3.49E-03
70GO:0005496: steroid binding3.49E-03
71GO:0031593: polyubiquitin binding4.32E-03
72GO:0051117: ATPase binding4.32E-03
73GO:0051020: GTPase binding5.20E-03
74GO:0015217: ADP transmembrane transporter activity5.20E-03
75GO:0004017: adenylate kinase activity5.20E-03
76GO:0004602: glutathione peroxidase activity5.20E-03
77GO:0102391: decanoate--CoA ligase activity5.20E-03
78GO:0005347: ATP transmembrane transporter activity5.20E-03
79GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups5.22E-03
80GO:0008107: galactoside 2-alpha-L-fucosyltransferase activity6.15E-03
81GO:0042162: telomeric DNA binding6.15E-03
82GO:0008121: ubiquinol-cytochrome-c reductase activity6.15E-03
83GO:0008143: poly(A) binding6.15E-03
84GO:0008320: protein transmembrane transporter activity6.15E-03
85GO:0004467: long-chain fatty acid-CoA ligase activity6.15E-03
86GO:0015288: porin activity7.15E-03
87GO:0035064: methylated histone binding7.15E-03
88GO:0004034: aldose 1-epimerase activity7.15E-03
89GO:0015491: cation:cation antiporter activity7.15E-03
90GO:0015078: hydrogen ion transmembrane transporter activity8.21E-03
91GO:0008308: voltage-gated anion channel activity8.21E-03
92GO:0008173: RNA methyltransferase activity8.21E-03
93GO:0009931: calcium-dependent protein serine/threonine kinase activity8.60E-03
94GO:0004683: calmodulin-dependent protein kinase activity9.07E-03
95GO:0008417: fucosyltransferase activity9.31E-03
96GO:0045309: protein phosphorylated amino acid binding1.05E-02
97GO:0001055: RNA polymerase II activity1.05E-02
98GO:0003746: translation elongation factor activity1.28E-02
99GO:0003697: single-stranded DNA binding1.28E-02
100GO:0004161: dimethylallyltranstransferase activity1.29E-02
101GO:0019904: protein domain specific binding1.29E-02
102GO:0008794: arsenate reductase (glutaredoxin) activity1.29E-02
103GO:0001054: RNA polymerase I activity1.29E-02
104GO:0008559: xenobiotic-transporting ATPase activity1.29E-02
105GO:0001056: RNA polymerase III activity1.43E-02
106GO:0000049: tRNA binding1.43E-02
107GO:0031072: heat shock protein binding1.56E-02
108GO:0008266: poly(U) RNA binding1.70E-02
109GO:0042626: ATPase activity, coupled to transmembrane movement of substances1.73E-02
110GO:0051537: 2 iron, 2 sulfur cluster binding1.79E-02
111GO:0043621: protein self-association1.79E-02
112GO:0005507: copper ion binding1.85E-02
113GO:0005198: structural molecule activity1.86E-02
114GO:0005385: zinc ion transmembrane transporter activity2.14E-02
115GO:0003714: transcription corepressor activity2.14E-02
116GO:0036459: thiol-dependent ubiquitinyl hydrolase activity2.46E-02
117GO:0031625: ubiquitin protein ligase binding2.47E-02
118GO:0008514: organic anion transmembrane transporter activity2.96E-02
119GO:0022857: transmembrane transporter activity2.99E-02
120GO:0047134: protein-disulfide reductase activity3.14E-02
121GO:0015035: protein disulfide oxidoreductase activity3.27E-02
122GO:0046873: metal ion transmembrane transporter activity3.50E-02
123GO:0004791: thioredoxin-disulfide reductase activity3.69E-02
124GO:0005355: glucose transmembrane transporter activity3.69E-02
125GO:0050662: coenzyme binding3.69E-02
126GO:0004872: receptor activity3.87E-02
127GO:0019843: rRNA binding3.97E-02
128GO:0004843: thiol-dependent ubiquitin-specific protease activity4.07E-02
129GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.46E-02
130GO:0003684: damaged DNA binding4.66E-02
131GO:0008237: metallopeptidase activity4.86E-02
RankGO TermAdjusted P value
1GO:0097361: CIA complex0.00E+00
2GO:0000502: proteasome complex6.29E-50
3GO:0005839: proteasome core complex9.61E-41
4GO:0019773: proteasome core complex, alpha-subunit complex1.33E-21
5GO:0005829: cytosol2.36E-16
6GO:0005774: vacuolar membrane2.47E-12
7GO:0005747: mitochondrial respiratory chain complex I3.04E-09
8GO:0005773: vacuole3.42E-08
9GO:0022626: cytosolic ribosome9.49E-08
10GO:0031595: nuclear proteasome complex1.22E-07
11GO:0005753: mitochondrial proton-transporting ATP synthase complex1.36E-07
12GO:0000275: mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)9.16E-07
13GO:0008541: proteasome regulatory particle, lid subcomplex1.88E-06
14GO:0005783: endoplasmic reticulum5.82E-06
15GO:0031597: cytosolic proteasome complex6.76E-06
16GO:0005737: cytoplasm9.01E-06
17GO:0046861: glyoxysomal membrane2.48E-05
18GO:0005838: proteasome regulatory particle2.48E-05
19GO:0008540: proteasome regulatory particle, base subcomplex4.18E-05
20GO:0005788: endoplasmic reticulum lumen1.38E-04
21GO:0008250: oligosaccharyltransferase complex1.48E-04
22GO:0030904: retromer complex2.12E-04
23GO:0005771: multivesicular body2.12E-04
24GO:0070469: respiratory chain2.31E-04
25GO:0000325: plant-type vacuole2.55E-04
26GO:0031234: extrinsic component of cytoplasmic side of plasma membrane3.99E-04
27GO:0019774: proteasome core complex, beta-subunit complex3.99E-04
28GO:0045273: respiratory chain complex II4.62E-04
29GO:0005749: mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)4.62E-04
30GO:0000421: autophagosome membrane4.62E-04
31GO:0005759: mitochondrial matrix4.98E-04
32GO:0009514: glyoxysome5.64E-04
33GO:0033178: proton-transporting two-sector ATPase complex, catalytic domain8.66E-04
34GO:0005697: telomerase holoenzyme complex8.66E-04
35GO:0005794: Golgi apparatus8.97E-04
36GO:0009507: chloroplast1.01E-03
37GO:0005853: eukaryotic translation elongation factor 1 complex1.40E-03
38GO:0005840: ribosome1.51E-03
39GO:0005750: mitochondrial respiratory chain complex III1.56E-03
40GO:0005775: vacuolar lumen2.03E-03
41GO:0022625: cytosolic large ribosomal subunit2.03E-03
42GO:0033180: proton-transporting V-type ATPase, V1 domain2.03E-03
43GO:0030658: transport vesicle membrane2.03E-03
44GO:0005758: mitochondrial intermembrane space2.16E-03
45GO:0045271: respiratory chain complex I2.38E-03
46GO:0005776: autophagosome2.73E-03
47GO:0033179: proton-transporting V-type ATPase, V0 domain2.73E-03
48GO:0031410: cytoplasmic vesicle2.87E-03
49GO:0005746: mitochondrial respiratory chain3.49E-03
50GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)4.32E-03
51GO:0005801: cis-Golgi network5.20E-03
52GO:0005886: plasma membrane5.64E-03
53GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane6.15E-03
54GO:0032580: Golgi cisterna membrane6.44E-03
55GO:0005732: small nucleolar ribonucleoprotein complex7.10E-03
56GO:0016020: membrane7.84E-03
57GO:0046930: pore complex8.21E-03
58GO:0005779: integral component of peroxisomal membrane8.21E-03
59GO:0005763: mitochondrial small ribosomal subunit9.31E-03
60GO:0005736: DNA-directed RNA polymerase I complex9.31E-03
61GO:0005666: DNA-directed RNA polymerase III complex1.05E-02
62GO:0015934: large ribosomal subunit1.17E-02
63GO:0005730: nucleolus1.27E-02
64GO:0009705: plant-type vacuole membrane1.28E-02
65GO:0005665: DNA-directed RNA polymerase II, core complex1.43E-02
66GO:0031902: late endosome membrane1.52E-02
67GO:0009508: plastid chromosome1.56E-02
68GO:0009536: plastid1.77E-02
69GO:0030176: integral component of endoplasmic reticulum membrane1.84E-02
70GO:0005739: mitochondrion1.84E-02
71GO:0005769: early endosome1.99E-02
72GO:0000419: DNA-directed RNA polymerase V complex1.99E-02
73GO:0031966: mitochondrial membrane2.08E-02
74GO:0015935: small ribosomal subunit2.46E-02
75GO:0005741: mitochondrial outer membrane2.46E-02
76GO:0005789: endoplasmic reticulum membrane2.68E-02
77GO:0005777: peroxisome3.90E-02
78GO:0005743: mitochondrial inner membrane4.31E-02
79GO:0009295: nucleoid4.86E-02
80GO:0005778: peroxisomal membrane4.86E-02
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Gene type



Gene DE type