co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G21440

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901401: regulation of tetrapyrrole metabolic process	0.00E+00
2	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
3	GO:0098586: cellular response to virus	0.00E+00
4	GO:0009715: chalcone biosynthetic process	0.00E+00
5	GO:0017009: protein-phycocyanobilin linkage	0.00E+00
6	GO:0042821: pyridoxal biosynthetic process	0.00E+00
7	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
8	GO:0015882: L-ascorbic acid transport	0.00E+00
9	GO:0019265: glycine biosynthetic process, by transamination of glyoxylate	0.00E+00
10	GO:0019447: D-cysteine catabolic process	0.00E+00
11	GO:0042820: vitamin B6 catabolic process	0.00E+00
12	GO:0019761: glucosinolate biosynthetic process	2.48E-09
13	GO:0015995: chlorophyll biosynthetic process	5.12E-07
14	GO:0055114: oxidation-reduction process	4.49E-06
15	GO:0090391: granum assembly	5.12E-06
16	GO:0009098: leucine biosynthetic process	5.34E-06
17	GO:0018298: protein-chromophore linkage	1.96E-05
18	GO:0009902: chloroplast relocation	2.20E-05
19	GO:0015979: photosynthesis	3.15E-05
20	GO:0009625: response to insect	5.68E-05
21	GO:0009658: chloroplast organization	1.24E-04
22	GO:0048564: photosystem I assembly	1.27E-04
23	GO:0042371: vitamin K biosynthetic process	1.69E-04
24	GO:0010028: xanthophyll cycle	1.69E-04
25	GO:0006419: alanyl-tRNA aminoacylation	1.69E-04
26	GO:0010362: negative regulation of anion channel activity by blue light	1.69E-04
27	GO:0009443: pyridoxal 5'-phosphate salvage	1.69E-04
28	GO:0071277: cellular response to calcium ion	1.69E-04
29	GO:0033506: glucosinolate biosynthetic process from homomethionine	1.69E-04
30	GO:1904966: positive regulation of vitamin E biosynthetic process	1.69E-04
31	GO:1904964: positive regulation of phytol biosynthetic process	1.69E-04
32	GO:0000373: Group II intron splicing	1.95E-04
33	GO:0009638: phototropism	2.33E-04
34	GO:0009684: indoleacetic acid biosynthetic process	3.19E-04
35	GO:0042853: L-alanine catabolic process	3.83E-04
36	GO:0046741: transport of virus in host, tissue to tissue	3.83E-04
37	GO:1902326: positive regulation of chlorophyll biosynthetic process	3.83E-04
38	GO:2000030: regulation of response to red or far red light	3.83E-04
39	GO:0009629: response to gravity	3.83E-04
40	GO:0006435: threonyl-tRNA aminoacylation	3.83E-04
41	GO:0019752: carboxylic acid metabolic process	3.83E-04
42	GO:0030187: melatonin biosynthetic process	3.83E-04
43	GO:0000256: allantoin catabolic process	3.83E-04
44	GO:0006006: glucose metabolic process	4.18E-04
45	GO:0019253: reductive pentose-phosphate cycle	4.71E-04
46	GO:0005977: glycogen metabolic process	6.25E-04
47	GO:0009405: pathogenesis	6.25E-04
48	GO:0010136: ureide catabolic process	6.25E-04
49	GO:0009644: response to high light intensity	6.40E-04
50	GO:0098542: defense response to other organism	7.83E-04
51	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	8.93E-04
52	GO:0009067: aspartate family amino acid biosynthetic process	8.93E-04
53	GO:0006145: purine nucleobase catabolic process	8.93E-04
54	GO:0042989: sequestering of actin monomers	8.93E-04
55	GO:0046739: transport of virus in multicellular host	8.93E-04
56	GO:0043572: plastid fission	8.93E-04
57	GO:0010021: amylopectin biosynthetic process	1.18E-03
58	GO:0009755: hormone-mediated signaling pathway	1.18E-03
59	GO:0009765: photosynthesis, light harvesting	1.18E-03
60	GO:0016123: xanthophyll biosynthetic process	1.50E-03
61	GO:0010438: cellular response to sulfur starvation	1.50E-03
62	GO:0016558: protein import into peroxisome matrix	1.50E-03
63	GO:0006656: phosphatidylcholine biosynthetic process	1.50E-03
64	GO:0030041: actin filament polymerization	1.50E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	1.85E-03
66	GO:0010189: vitamin E biosynthetic process	2.22E-03
67	GO:0009088: threonine biosynthetic process	2.22E-03
68	GO:0071470: cellular response to osmotic stress	2.22E-03
69	GO:1901259: chloroplast rRNA processing	2.22E-03
70	GO:0031930: mitochondria-nucleus signaling pathway	2.22E-03
71	GO:0010196: nonphotochemical quenching	2.61E-03
72	GO:0009769: photosynthesis, light harvesting in photosystem II	2.61E-03
73	GO:0009645: response to low light intensity stimulus	2.61E-03
74	GO:0006400: tRNA modification	2.61E-03
75	GO:0051510: regulation of unidimensional cell growth	2.61E-03
76	GO:0031540: regulation of anthocyanin biosynthetic process	3.02E-03
77	GO:0009231: riboflavin biosynthetic process	3.02E-03
78	GO:0009819: drought recovery	3.02E-03
79	GO:0009642: response to light intensity	3.02E-03
80	GO:0010439: regulation of glucosinolate biosynthetic process	3.02E-03
81	GO:0030091: protein repair	3.02E-03
82	GO:0009704: de-etiolation	3.02E-03
83	GO:2000070: regulation of response to water deprivation	3.02E-03
84	GO:0009407: toxin catabolic process	3.18E-03
85	GO:0009657: plastid organization	3.46E-03
86	GO:0009637: response to blue light	3.65E-03
87	GO:0009853: photorespiration	3.65E-03
88	GO:0009867: jasmonic acid mediated signaling pathway	3.65E-03
89	GO:0006979: response to oxidative stress	3.87E-03
90	GO:0098656: anion transmembrane transport	3.91E-03
91	GO:0009821: alkaloid biosynthetic process	3.91E-03
92	GO:0090333: regulation of stomatal closure	3.91E-03
93	GO:0010114: response to red light	4.70E-03
94	GO:0009744: response to sucrose	4.70E-03
95	GO:0009416: response to light stimulus	4.82E-03
96	GO:0009641: shade avoidance	4.87E-03
97	GO:0006949: syncytium formation	4.87E-03
98	GO:0006259: DNA metabolic process	4.87E-03
99	GO:0009611: response to wounding	4.99E-03
100	GO:0009636: response to toxic substance	5.27E-03
101	GO:0018119: peptidyl-cysteine S-nitrosylation	5.38E-03
102	GO:0009682: induced systemic resistance	5.38E-03
103	GO:0006265: DNA topological change	5.38E-03
104	GO:0009089: lysine biosynthetic process via diaminopimelate	5.38E-03
105	GO:0010105: negative regulation of ethylene-activated signaling pathway	5.91E-03
106	GO:0080167: response to karrikin	5.93E-03
107	GO:0009585: red, far-red light phototransduction	6.32E-03
108	GO:0009725: response to hormone	6.46E-03
109	GO:0010224: response to UV-B	6.54E-03
110	GO:0010223: secondary shoot formation	7.02E-03
111	GO:0010020: chloroplast fission	7.02E-03
112	GO:0006096: glycolytic process	7.47E-03
113	GO:0090351: seedling development	7.60E-03
114	GO:0006863: purine nucleobase transport	8.20E-03
115	GO:0006833: water transport	8.20E-03
116	GO:0046686: response to cadmium ion	8.27E-03
117	GO:0007010: cytoskeleton organization	8.81E-03
118	GO:0080147: root hair cell development	8.81E-03
119	GO:0032259: methylation	9.21E-03
120	GO:0051302: regulation of cell division	9.44E-03
121	GO:0007017: microtubule-based process	9.44E-03
122	GO:0009768: photosynthesis, light harvesting in photosystem I	9.44E-03
123	GO:0009269: response to desiccation	1.01E-02
124	GO:0009753: response to jasmonic acid	1.06E-02
125	GO:0080092: regulation of pollen tube growth	1.08E-02
126	GO:0006730: one-carbon metabolic process	1.08E-02
127	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.14E-02
128	GO:0009693: ethylene biosynthetic process	1.14E-02
129	GO:0009058: biosynthetic process	1.19E-02
130	GO:0009845: seed germination	1.22E-02
131	GO:0016117: carotenoid biosynthetic process	1.28E-02
132	GO:0010118: stomatal movement	1.36E-02
133	GO:0006606: protein import into nucleus	1.36E-02
134	GO:0034220: ion transmembrane transport	1.36E-02
135	GO:0010197: polar nucleus fusion	1.43E-02
136	GO:0048868: pollen tube development	1.43E-02
137	GO:0006814: sodium ion transport	1.51E-02
138	GO:0007059: chromosome segregation	1.51E-02
139	GO:0007623: circadian rhythm	1.56E-02
140	GO:0019252: starch biosynthetic process	1.58E-02
141	GO:0008654: phospholipid biosynthetic process	1.58E-02
142	GO:0009791: post-embryonic development	1.58E-02
143	GO:0009793: embryo development ending in seed dormancy	1.64E-02
144	GO:0006635: fatty acid beta-oxidation	1.66E-02
145	GO:0010193: response to ozone	1.66E-02
146	GO:0000302: response to reactive oxygen species	1.66E-02
147	GO:0016032: viral process	1.74E-02
148	GO:0009735: response to cytokinin	1.80E-02
149	GO:0009828: plant-type cell wall loosening	1.90E-02
150	GO:0010027: thylakoid membrane organization	2.16E-02
151	GO:0006810: transport	2.49E-02
152	GO:0009817: defense response to fungus, incompatible interaction	2.61E-02
153	GO:0000160: phosphorelay signal transduction system	2.70E-02
154	GO:0009813: flavonoid biosynthetic process	2.70E-02
155	GO:0055085: transmembrane transport	2.72E-02
156	GO:0006811: ion transport	2.79E-02
157	GO:0010218: response to far red light	2.79E-02
158	GO:0048527: lateral root development	2.89E-02
159	GO:0034599: cellular response to oxidative stress	3.18E-02
160	GO:0009926: auxin polar transport	3.69E-02
161	GO:0009664: plant-type cell wall organization	4.34E-02
162	GO:0006364: rRNA processing	4.57E-02
163	GO:0006417: regulation of translation	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity	0.00E+00
2	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
3	GO:0050281: serine-glyoxylate transaminase activity	0.00E+00
4	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
5	GO:0004059: aralkylamine N-acetyltransferase activity	0.00E+00
6	GO:0046406: magnesium protoporphyrin IX methyltransferase activity	0.00E+00
7	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
8	GO:0071522: ureidoglycine aminohydrolase activity	0.00E+00
9	GO:0008685: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	0.00E+00
10	GO:0016210: naringenin-chalcone synthase activity	0.00E+00
11	GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity	0.00E+00
12	GO:0004760: serine-pyruvate transaminase activity	0.00E+00
13	GO:0042623: ATPase activity, coupled	0.00E+00
14	GO:0019148: D-cysteine desulfhydrase activity	0.00E+00
15	GO:0010276: phytol kinase activity	0.00E+00
16	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
17	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	1.38E-06
18	GO:0003862: 3-isopropylmalate dehydrogenase activity	1.38E-06
19	GO:0008453: alanine-glyoxylate transaminase activity	2.20E-05
20	GO:0019899: enzyme binding	9.92E-05
21	GO:0047958: glycine:2-oxoglutarate aminotransferase activity	1.69E-04
22	GO:0004813: alanine-tRNA ligase activity	1.69E-04
23	GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity	1.69E-04
24	GO:0080105: 6-methylthiopropyl glucosinolate S-oxygenase activity	1.69E-04
25	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.69E-04
26	GO:0016168: chlorophyll binding	2.31E-04
27	GO:0005089: Rho guanyl-nucleotide exchange factor activity	3.19E-04
28	GO:0080102: 3-methylthiopropyl glucosinolate S-oxygenase activity	3.83E-04
29	GO:0080104: 5-methylthiopropyl glucosinolate S-oxygenase activity	3.83E-04
30	GO:0080106: 7-methylthiopropyl glucosinolate S-oxygenase activity	3.83E-04
31	GO:0004829: threonine-tRNA ligase activity	3.83E-04
32	GO:0019156: isoamylase activity	3.83E-04
33	GO:0000234: phosphoethanolamine N-methyltransferase activity	3.83E-04
34	GO:0070402: NADPH binding	6.25E-04
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	6.25E-04
36	GO:0008430: selenium binding	6.25E-04
37	GO:0010277: chlorophyllide a oxygenase [overall] activity	6.25E-04
38	GO:0004148: dihydrolipoyl dehydrogenase activity	6.25E-04
39	GO:0003861: 3-isopropylmalate dehydratase activity	6.25E-04
40	GO:0080103: 4-methylthiopropyl glucosinolate S-oxygenase activity	6.25E-04
41	GO:0051287: NAD binding	7.37E-04
42	GO:0009882: blue light photoreceptor activity	8.93E-04
43	GO:0008508: bile acid:sodium symporter activity	8.93E-04
44	GO:0004072: aspartate kinase activity	8.93E-04
45	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	8.93E-04
46	GO:0080107: 8-methylthiopropyl glucosinolate S-oxygenase activity	8.93E-04
47	GO:0016851: magnesium chelatase activity	8.93E-04
48	GO:0022891: substrate-specific transmembrane transporter activity	9.28E-04
49	GO:0016836: hydro-lyase activity	1.18E-03
50	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.18E-03
51	GO:0043495: protein anchor	1.18E-03
52	GO:0016616: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.18E-03
53	GO:0003785: actin monomer binding	1.50E-03
54	GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	1.50E-03
55	GO:0016491: oxidoreductase activity	1.72E-03
56	GO:0004605: phosphatidate cytidylyltransferase activity	1.85E-03
57	GO:0000293: ferric-chelate reductase activity	1.85E-03
58	GO:0004556: alpha-amylase activity	1.85E-03
59	GO:0016597: amino acid binding	2.10E-03
60	GO:0033743: peptide-methionine (R)-S-oxide reductase activity	2.22E-03
61	GO:0004033: aldo-keto reductase (NADP) activity	3.02E-03
62	GO:0050897: cobalt ion binding	3.33E-03
63	GO:0008135: translation factor activity, RNA binding	3.46E-03
64	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	3.46E-03
65	GO:0050661: NADP binding	4.15E-03
66	GO:0016844: strictosidine synthase activity	4.38E-03
67	GO:0004364: glutathione transferase activity	4.51E-03
68	GO:0000049: tRNA binding	5.91E-03
69	GO:0004089: carbonate dehydratase activity	6.46E-03
70	GO:0000155: phosphorelay sensor kinase activity	6.46E-03
71	GO:0005315: inorganic phosphate transmembrane transporter activity	6.46E-03
72	GO:0031409: pigment binding	8.20E-03
73	GO:0005345: purine nucleobase transmembrane transporter activity	9.44E-03
74	GO:0003727: single-stranded RNA binding	1.21E-02
75	GO:0008514: organic anion transmembrane transporter activity	1.21E-02
76	GO:0004499: N,N-dimethylaniline monooxygenase activity	1.21E-02
77	GO:0008080: N-acetyltransferase activity	1.43E-02
78	GO:0016853: isomerase activity	1.51E-02
79	GO:0010181: FMN binding	1.51E-02
80	GO:0004872: receptor activity	1.58E-02
81	GO:0048038: quinone binding	1.66E-02
82	GO:0042802: identical protein binding	1.99E-02
83	GO:0015250: water channel activity	2.16E-02
84	GO:0000287: magnesium ion binding	2.37E-02
85	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	2.51E-02
86	GO:0050660: flavin adenine dinucleotide binding	2.80E-02
87	GO:0003746: translation elongation factor activity	3.08E-02
88	GO:0005507: copper ion binding	3.13E-02
89	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.87E-02
90	GO:0051537: 2 iron, 2 sulfur cluster binding	3.91E-02
91	GO:0043621: protein self-association	3.91E-02
92	GO:0005198: structural molecule activity	4.01E-02
93	GO:0003924: GTPase activity	4.41E-02
94	GO:0005506: iron ion binding	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0009349: riboflavin synthase complex	0.00E+00
2	GO:0009507: chloroplast	1.84E-33
3	GO:0009535: chloroplast thylakoid membrane	2.00E-14
4	GO:0009570: chloroplast stroma	2.18E-12
5	GO:0009941: chloroplast envelope	4.61E-07
6	GO:0009579: thylakoid	7.74E-06
7	GO:0009534: chloroplast thylakoid	6.30E-05
8	GO:0009523: photosystem II	1.14E-04
9	GO:0009515: granal stacked thylakoid	1.69E-04
10	GO:0009543: chloroplast thylakoid lumen	2.48E-04
11	GO:0030095: chloroplast photosystem II	4.71E-04
12	GO:0031977: thylakoid lumen	5.23E-04
13	GO:0010007: magnesium chelatase complex	6.25E-04
14	GO:0009654: photosystem II oxygen evolving complex	7.14E-04
15	GO:0042651: thylakoid membrane	7.14E-04
16	GO:0042646: plastid nucleoid	8.93E-04
17	GO:0031969: chloroplast membrane	1.12E-03
18	GO:0030286: dynein complex	1.18E-03
19	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	1.18E-03
20	GO:0009517: PSII associated light-harvesting complex II	1.18E-03
21	GO:0009706: chloroplast inner membrane	1.30E-03
22	GO:0019898: extrinsic component of membrane	1.44E-03
23	GO:0010287: plastoglobule	1.61E-03
24	GO:0009295: nucleoid	1.98E-03
25	GO:0009707: chloroplast outer membrane	2.89E-03
26	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	3.91E-03
27	GO:0042644: chloroplast nucleoid	3.91E-03
28	GO:0016324: apical plasma membrane	4.87E-03
29	GO:0009536: plastid	5.46E-03
30	GO:0005938: cell cortex	6.46E-03
31	GO:0009508: plastid chromosome	6.46E-03
32	GO:0016020: membrane	6.97E-03
33	GO:0030076: light-harvesting complex	7.60E-03
34	GO:0015629: actin cytoskeleton	1.14E-02
35	GO:0048046: apoplast	1.26E-02
36	GO:0009522: photosystem I	1.51E-02
37	GO:0005783: endoplasmic reticulum	1.73E-02
38	GO:0005778: peroxisomal membrane	1.99E-02
39	GO:0010319: stromule	1.99E-02
40	GO:0005777: peroxisome	2.40E-02