Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G21065

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0030155: regulation of cell adhesion0.00E+00
2GO:0019323: pentose catabolic process0.00E+00
3GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0016553: base conversion or substitution editing0.00E+00
6GO:0005996: monosaccharide metabolic process0.00E+00
7GO:0015717: triose phosphate transport0.00E+00
8GO:0018023: peptidyl-lysine trimethylation0.00E+00
9GO:1905177: tracheary element differentiation0.00E+00
10GO:0000023: maltose metabolic process0.00E+00
11GO:1905421: regulation of plant organ morphogenesis0.00E+00
12GO:0002184: cytoplasmic translational termination0.00E+00
13GO:0015979: photosynthesis1.15E-20
14GO:0032544: plastid translation6.78E-14
15GO:0009735: response to cytokinin1.27E-12
16GO:0006412: translation2.98E-11
17GO:0042254: ribosome biogenesis1.93E-08
18GO:0009773: photosynthetic electron transport in photosystem I1.93E-08
19GO:0009409: response to cold3.08E-08
20GO:0019464: glycine decarboxylation via glycine cleavage system6.93E-07
21GO:0030388: fructose 1,6-bisphosphate metabolic process5.84E-06
22GO:0015995: chlorophyll biosynthetic process8.73E-06
23GO:0005978: glycogen biosynthetic process1.24E-05
24GO:0006000: fructose metabolic process2.05E-05
25GO:0010206: photosystem II repair2.46E-05
26GO:0009658: chloroplast organization2.92E-05
27GO:0019252: starch biosynthetic process4.10E-05
28GO:0005983: starch catabolic process6.72E-05
29GO:0042742: defense response to bacterium6.86E-05
30GO:0045727: positive regulation of translation8.00E-05
31GO:0010021: amylopectin biosynthetic process8.00E-05
32GO:0010027: thylakoid membrane organization9.49E-05
33GO:0010190: cytochrome b6f complex assembly1.80E-04
34GO:0009768: photosynthesis, light harvesting in photosystem I1.86E-04
35GO:0010196: nonphotochemical quenching3.16E-04
36GO:0009645: response to low light intensity stimulus3.16E-04
37GO:0000025: maltose catabolic process3.60E-04
38GO:0043489: RNA stabilization3.60E-04
39GO:0044262: cellular carbohydrate metabolic process3.60E-04
40GO:0080093: regulation of photorespiration3.60E-04
41GO:0031998: regulation of fatty acid beta-oxidation3.60E-04
42GO:0006431: methionyl-tRNA aminoacylation3.60E-04
43GO:0009644: response to high light intensity3.97E-04
44GO:0006002: fructose 6-phosphate metabolic process4.86E-04
45GO:0035304: regulation of protein dephosphorylation7.83E-04
46GO:0009629: response to gravity7.83E-04
47GO:0019388: galactose catabolic process7.83E-04
48GO:0005976: polysaccharide metabolic process7.83E-04
49GO:0007154: cell communication7.83E-04
50GO:0018026: peptidyl-lysine monomethylation7.83E-04
51GO:0031648: protein destabilization7.83E-04
52GO:0010270: photosystem II oxygen evolving complex assembly7.83E-04
53GO:0018119: peptidyl-cysteine S-nitrosylation9.22E-04
54GO:0006094: gluconeogenesis1.19E-03
55GO:0009767: photosynthetic electron transport chain1.19E-03
56GO:0005986: sucrose biosynthetic process1.19E-03
57GO:0009817: defense response to fungus, incompatible interaction1.22E-03
58GO:0018298: protein-chromophore linkage1.22E-03
59GO:0048281: inflorescence morphogenesis1.27E-03
60GO:0006518: peptide metabolic process1.27E-03
61GO:0010623: programmed cell death involved in cell development1.27E-03
62GO:0035436: triose phosphate transmembrane transport1.27E-03
63GO:0090153: regulation of sphingolipid biosynthetic process1.27E-03
64GO:0016050: vesicle organization1.27E-03
65GO:0009052: pentose-phosphate shunt, non-oxidative branch1.83E-03
66GO:0010731: protein glutathionylation1.83E-03
67GO:0010148: transpiration1.83E-03
68GO:0009590: detection of gravity1.83E-03
69GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.83E-03
70GO:0006289: nucleotide-excision repair1.85E-03
71GO:0006418: tRNA aminoacylation for protein translation2.05E-03
72GO:0061077: chaperone-mediated protein folding2.25E-03
73GO:0009765: photosynthesis, light harvesting2.45E-03
74GO:0006109: regulation of carbohydrate metabolic process2.45E-03
75GO:2000122: negative regulation of stomatal complex development2.45E-03
76GO:0010600: regulation of auxin biosynthetic process2.45E-03
77GO:0006546: glycine catabolic process2.45E-03
78GO:0010508: positive regulation of autophagy2.45E-03
79GO:0015713: phosphoglycerate transport2.45E-03
80GO:0010037: response to carbon dioxide2.45E-03
81GO:0006808: regulation of nitrogen utilization2.45E-03
82GO:0015976: carbon utilization2.45E-03
83GO:0010023: proanthocyanidin biosynthetic process2.45E-03
84GO:0006284: base-excision repair2.92E-03
85GO:0006979: response to oxidative stress2.96E-03
86GO:0000304: response to singlet oxygen3.14E-03
87GO:0006544: glycine metabolic process3.14E-03
88GO:0006097: glyoxylate cycle3.14E-03
89GO:0006461: protein complex assembly3.14E-03
90GO:0006828: manganese ion transport3.88E-03
91GO:0009643: photosynthetic acclimation3.88E-03
92GO:0009635: response to herbicide3.88E-03
93GO:0006563: L-serine metabolic process3.88E-03
94GO:0010304: PSII associated light-harvesting complex II catabolic process3.88E-03
95GO:0042549: photosystem II stabilization3.88E-03
96GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.88E-03
97GO:0000470: maturation of LSU-rRNA3.88E-03
98GO:0010244: response to low fluence blue light stimulus by blue low-fluence system4.67E-03
99GO:1901259: chloroplast rRNA processing4.67E-03
100GO:0030488: tRNA methylation4.67E-03
101GO:0009955: adaxial/abaxial pattern specification4.67E-03
102GO:0070370: cellular heat acclimation5.52E-03
103GO:0009769: photosynthesis, light harvesting in photosystem II5.52E-03
104GO:0010103: stomatal complex morphogenesis5.52E-03
105GO:0010161: red light signaling pathway5.52E-03
106GO:0010928: regulation of auxin mediated signaling pathway6.41E-03
107GO:0030091: protein repair6.41E-03
108GO:0009704: de-etiolation6.41E-03
109GO:0015996: chlorophyll catabolic process7.36E-03
110GO:0001558: regulation of cell growth7.36E-03
111GO:0009657: plastid organization7.36E-03
112GO:0017004: cytochrome complex assembly7.36E-03
113GO:0051865: protein autoubiquitination8.35E-03
114GO:0006783: heme biosynthetic process8.35E-03
115GO:0048481: plant ovule development8.60E-03
116GO:0035999: tetrahydrofolate interconversion9.38E-03
117GO:0042761: very long-chain fatty acid biosynthetic process9.38E-03
118GO:0005982: starch metabolic process9.38E-03
119GO:0010205: photoinhibition9.38E-03
120GO:0010119: regulation of stomatal movement9.96E-03
121GO:0007623: circadian rhythm1.05E-02
122GO:0006782: protoporphyrinogen IX biosynthetic process1.05E-02
123GO:0048829: root cap development1.05E-02
124GO:0031627: telomeric loop formation1.05E-02
125GO:0009853: photorespiration1.09E-02
126GO:0034599: cellular response to oxidative stress1.14E-02
127GO:0006816: calcium ion transport1.16E-02
128GO:0019684: photosynthesis, light reaction1.16E-02
129GO:0009073: aromatic amino acid family biosynthetic process1.16E-02
130GO:0043085: positive regulation of catalytic activity1.16E-02
131GO:0006415: translational termination1.16E-02
132GO:0000272: polysaccharide catabolic process1.16E-02
133GO:0009750: response to fructose1.16E-02
134GO:0045037: protein import into chloroplast stroma1.28E-02
135GO:0010102: lateral root morphogenesis1.40E-02
136GO:0010628: positive regulation of gene expression1.40E-02
137GO:0006108: malate metabolic process1.40E-02
138GO:0006006: glucose metabolic process1.40E-02
139GO:0009718: anthocyanin-containing compound biosynthetic process1.40E-02
140GO:0055114: oxidation-reduction process1.47E-02
141GO:0010207: photosystem II assembly1.52E-02
142GO:0010020: chloroplast fission1.52E-02
143GO:0019253: reductive pentose-phosphate cycle1.52E-02
144GO:0006302: double-strand break repair1.52E-02
145GO:0005985: sucrose metabolic process1.65E-02
146GO:0010025: wax biosynthetic process1.78E-02
147GO:0006810: transport1.86E-02
148GO:0006364: rRNA processing1.91E-02
149GO:0009944: polarity specification of adaxial/abaxial axis1.92E-02
150GO:0000027: ribosomal large subunit assembly1.92E-02
151GO:0007017: microtubule-based process2.06E-02
152GO:0051302: regulation of cell division2.06E-02
153GO:0019915: lipid storage2.20E-02
154GO:0031408: oxylipin biosynthetic process2.20E-02
155GO:0051321: meiotic cell cycle2.20E-02
156GO:0016114: terpenoid biosynthetic process2.20E-02
157GO:0010017: red or far-red light signaling pathway2.35E-02
158GO:2000022: regulation of jasmonic acid mediated signaling pathway2.35E-02
159GO:0035428: hexose transmembrane transport2.35E-02
160GO:0030245: cellulose catabolic process2.35E-02
161GO:0009686: gibberellin biosynthetic process2.50E-02
162GO:0001944: vasculature development2.50E-02
163GO:0010089: xylem development2.65E-02
164GO:0009624: response to nematode2.72E-02
165GO:0006396: RNA processing2.80E-02
166GO:0042631: cellular response to water deprivation2.97E-02
167GO:0042335: cuticle development2.97E-02
168GO:0045454: cell redox homeostasis3.00E-02
169GO:0006662: glycerol ether metabolic process3.13E-02
170GO:0048868: pollen tube development3.13E-02
171GO:0046323: glucose import3.13E-02
172GO:0006508: proteolysis3.14E-02
173GO:0015986: ATP synthesis coupled proton transport3.30E-02
174GO:0000302: response to reactive oxygen species3.64E-02
175GO:0009790: embryo development3.96E-02
176GO:0030163: protein catabolic process3.99E-02
177GO:0008152: metabolic process4.38E-02
RankGO TermAdjusted P value
1GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
2GO:0005363: maltose transmembrane transporter activity0.00E+00
3GO:0050515: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity0.00E+00
4GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
5GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0009899: ent-kaurene synthase activity0.00E+00
8GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
9GO:0051738: xanthophyll binding0.00E+00
10GO:0019843: rRNA binding5.31E-19
11GO:0003735: structural constituent of ribosome1.49E-14
12GO:0008266: poly(U) RNA binding8.81E-10
13GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.84E-06
14GO:0010297: heteropolysaccharide binding5.84E-06
15GO:0005528: FK506 binding7.05E-06
16GO:0004324: ferredoxin-NADP+ reductase activity2.05E-05
17GO:0004375: glycine dehydrogenase (decarboxylating) activity4.51E-05
18GO:0016851: magnesium chelatase activity4.51E-05
19GO:0016168: chlorophyll binding1.05E-04
20GO:0003959: NADPH dehydrogenase activity1.25E-04
21GO:0031409: pigment binding1.39E-04
22GO:0004856: xylulokinase activity3.60E-04
23GO:0009496: plastoquinol--plastocyanin reductase activity3.60E-04
24GO:0004134: 4-alpha-glucanotransferase activity3.60E-04
25GO:0010242: oxygen evolving activity3.60E-04
26GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity3.60E-04
27GO:0046028: electron transporter, transferring electrons from cytochrome b6/f complex of photosystem II activity3.60E-04
28GO:0045157: electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity3.60E-04
29GO:0004853: uroporphyrinogen decarboxylase activity3.60E-04
30GO:0034256: chlorophyll(ide) b reductase activity3.60E-04
31GO:0008158: hedgehog receptor activity3.60E-04
32GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.60E-04
33GO:0008534: oxidized purine nucleobase lesion DNA N-glycosylase activity3.60E-04
34GO:0004825: methionine-tRNA ligase activity3.60E-04
35GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity3.60E-04
36GO:0003755: peptidyl-prolyl cis-trans isomerase activity4.48E-04
37GO:0050662: coenzyme binding4.60E-04
38GO:0004750: ribulose-phosphate 3-epimerase activity7.83E-04
39GO:0018708: thiol S-methyltransferase activity7.83E-04
40GO:0003844: 1,4-alpha-glucan branching enzyme activity7.83E-04
41GO:0004614: phosphoglucomutase activity7.83E-04
42GO:0008967: phosphoglycolate phosphatase activity7.83E-04
43GO:0033201: alpha-1,4-glucan synthase activity7.83E-04
44GO:0031072: heat shock protein binding1.19E-03
45GO:0043169: cation binding1.27E-03
46GO:0045158: electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity1.27E-03
47GO:0004373: glycogen (starch) synthase activity1.27E-03
48GO:0017150: tRNA dihydrouridine synthase activity1.27E-03
49GO:0002161: aminoacyl-tRNA editing activity1.27E-03
50GO:0045174: glutathione dehydrogenase (ascorbate) activity1.27E-03
51GO:0071917: triose-phosphate transmembrane transporter activity1.27E-03
52GO:0004252: serine-type endopeptidase activity1.58E-03
53GO:0016491: oxidoreductase activity1.79E-03
54GO:0019201: nucleotide kinase activity1.83E-03
55GO:0016149: translation release factor activity, codon specific1.83E-03
56GO:0043023: ribosomal large subunit binding1.83E-03
57GO:0009011: starch synthase activity2.45E-03
58GO:0019199: transmembrane receptor protein kinase activity2.45E-03
59GO:0008878: glucose-1-phosphate adenylyltransferase activity2.45E-03
60GO:0042277: peptide binding2.45E-03
61GO:0015120: phosphoglycerate transmembrane transporter activity2.45E-03
62GO:0016279: protein-lysine N-methyltransferase activity2.45E-03
63GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.45E-03
64GO:0019104: DNA N-glycosylase activity2.45E-03
65GO:0004372: glycine hydroxymethyltransferase activity3.14E-03
66GO:0016773: phosphotransferase activity, alcohol group as acceptor3.14E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity3.14E-03
68GO:0004812: aminoacyl-tRNA ligase activity3.16E-03
69GO:0004130: cytochrome-c peroxidase activity3.88E-03
70GO:0016615: malate dehydrogenase activity3.88E-03
71GO:2001070: starch binding3.88E-03
72GO:0048038: quinone binding4.55E-03
73GO:0033743: peptide-methionine (R)-S-oxide reductase activity4.67E-03
74GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.67E-03
75GO:0004017: adenylate kinase activity4.67E-03
76GO:0030060: L-malate dehydrogenase activity4.67E-03
77GO:0004602: glutathione peroxidase activity4.67E-03
78GO:0051920: peroxiredoxin activity4.67E-03
79GO:0004033: aldo-keto reductase (NADP) activity6.41E-03
80GO:0016209: antioxidant activity6.41E-03
81GO:0015078: hydrogen ion transmembrane transporter activity7.36E-03
82GO:0008173: RNA methyltransferase activity7.36E-03
83GO:0005509: calcium ion binding7.56E-03
84GO:0008236: serine-type peptidase activity8.18E-03
85GO:0003747: translation release factor activity8.35E-03
86GO:0005384: manganese ion transmembrane transporter activity9.38E-03
87GO:0004222: metalloendopeptidase activity9.49E-03
88GO:0008047: enzyme activator activity1.05E-02
89GO:0003691: double-stranded telomeric DNA binding1.16E-02
90GO:0044183: protein binding involved in protein folding1.16E-02
91GO:0000049: tRNA binding1.28E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity1.40E-02
93GO:0004089: carbonate dehydratase activity1.40E-02
94GO:0015095: magnesium ion transmembrane transporter activity1.40E-02
95GO:0051537: 2 iron, 2 sulfur cluster binding1.53E-02
96GO:0000287: magnesium ion binding1.78E-02
97GO:0004857: enzyme inhibitor activity1.92E-02
98GO:0008408: 3'-5' exonuclease activity2.20E-02
99GO:0003723: RNA binding2.45E-02
100GO:0030570: pectate lyase activity2.50E-02
101GO:0008810: cellulase activity2.50E-02
102GO:0022891: substrate-specific transmembrane transporter activity2.50E-02
103GO:0003756: protein disulfide isomerase activity2.65E-02
104GO:0051082: unfolded protein binding2.72E-02
105GO:0047134: protein-disulfide reductase activity2.81E-02
106GO:0001085: RNA polymerase II transcription factor binding3.13E-02
107GO:0005355: glucose transmembrane transporter activity3.30E-02
108GO:0004791: thioredoxin-disulfide reductase activity3.30E-02
109GO:0016829: lyase activity3.68E-02
110GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.99E-02
111GO:0003684: damaged DNA binding4.17E-02
112GO:0008237: metallopeptidase activity4.35E-02
113GO:0005200: structural constituent of cytoskeleton4.35E-02
RankGO TermAdjusted P value
1GO:0005943: phosphatidylinositol 3-kinase complex, class IA0.00E+00
2GO:0044391: ribosomal subunit0.00E+00
3GO:0042579: microbody0.00E+00
4GO:0098572: stromal side of plastid thylakoid membrane0.00E+00
5GO:0009507: chloroplast2.48E-89
6GO:0009534: chloroplast thylakoid4.75E-65
7GO:0009570: chloroplast stroma3.19E-62
8GO:0009941: chloroplast envelope3.38E-61
9GO:0009535: chloroplast thylakoid membrane5.37E-53
10GO:0009579: thylakoid7.01E-45
11GO:0009543: chloroplast thylakoid lumen5.31E-19
12GO:0031977: thylakoid lumen5.33E-19
13GO:0005840: ribosome2.59E-16
14GO:0010287: plastoglobule4.70E-16
15GO:0010319: stromule9.90E-11
16GO:0030095: chloroplast photosystem II8.81E-10
17GO:0009654: photosystem II oxygen evolving complex4.12E-09
18GO:0019898: extrinsic component of membrane5.17E-08
19GO:0048046: apoplast9.12E-08
20GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.17E-07
21GO:0009706: chloroplast inner membrane1.17E-06
22GO:0009508: plastid chromosome2.52E-06
23GO:0009295: nucleoid4.22E-06
24GO:0016020: membrane1.01E-05
25GO:0009538: photosystem I reaction center1.24E-05
26GO:0010007: magnesium chelatase complex2.05E-05
27GO:0009523: photosystem II4.10E-05
28GO:0005960: glycine cleavage complex4.51E-05
29GO:0030076: light-harvesting complex1.18E-04
30GO:0055035: plastid thylakoid membrane1.25E-04
31GO:0009533: chloroplast stromal thylakoid3.16E-04
32GO:0031969: chloroplast membrane3.18E-04
33GO:0009782: photosystem I antenna complex3.60E-04
34GO:0000791: euchromatin3.60E-04
35GO:0009501: amyloplast3.97E-04
36GO:0009522: photosystem I4.60E-04
37GO:0030093: chloroplast photosystem I7.83E-04
38GO:0030870: Mre11 complex7.83E-04
39GO:0000427: plastid-encoded plastid RNA polymerase complex7.83E-04
40GO:0000311: plastid large ribosomal subunit1.05E-03
41GO:0015934: large ribosomal subunit1.46E-03
42GO:0009536: plastid1.51E-03
43GO:0042651: thylakoid membrane2.05E-03
44GO:0015935: small ribosomal subunit2.25E-03
45GO:0009517: PSII associated light-harvesting complex II2.45E-03
46GO:0009512: cytochrome b6f complex3.14E-03
47GO:0000795: synaptonemal complex3.14E-03
48GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.88E-03
49GO:0009840: chloroplastic endopeptidase Clp complex4.67E-03
50GO:0000783: nuclear telomere cap complex7.36E-03
51GO:0042644: chloroplast nucleoid8.35E-03
52GO:0045298: tubulin complex8.35E-03
53GO:0005763: mitochondrial small ribosomal subunit8.35E-03
54GO:0043234: protein complex1.78E-02
55GO:0009532: plastid stroma2.20E-02
56GO:0022625: cytosolic large ribosomal subunit2.55E-02
57GO:0005623: cell3.49E-02
58GO:0000785: chromatin3.81E-02
59GO:0030529: intracellular ribonucleoprotein complex4.72E-02
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Gene type



Gene DE type